data_5CLQ
#
_model_server_result.job_id            8a4qkJyK9EdAjBdcgHFEUw 
_model_server_result.datetime_utc      '2024-11-14 03:15:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5clq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    5CLQ 
#
_exptl.entry_id    5CLQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CLQ 
_cell.length_a            102.53 
_cell.length_b            170.92 
_cell.length_c            135.65 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CLQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,O,P 1 1 
C,D,J,K,L,M,N,Q,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 142 B CYS 142 1_555 B SG CYS 142 B CYS 142 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 D SG CYS 142 D CYS 142 1_555 D SG CYS 142 D CYS 142 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 A OG1 THR 24 A THR 24 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc2 A OG1 THR 42 A THR 42 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc3 E O2G GNP . A GNP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc4 E O1B GNP . A GNP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc5 F MG MG . A MG 302 1_555 O O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
metalc ? metalc6 C OG1 THR 24 C THR 24 1_555 L MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc7 C OG1 THR 42 C THR 42 1_555 L MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc8 K O2G GNP . C GNP 302 1_555 L MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc9 K O2B GNP . C GNP 302 1_555 L MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc10 L MG MG . C MG 303 1_555 Q O HOH . C HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc11 L MG MG . C MG 303 1_555 Q O HOH . C HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     5CLQ 
_atom_sites.fract_transf_matrix[1][1]    0.009753 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005851 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007372 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GNP A 1 301 250 GNP GNP . 
F 4 MG A 1 302 251 MG MG . 
G 5 SO4 A 1 303 303 SO4 SO4 . 
H 5 SO4 A 1 304 306 SO4 SO4 . 
I 5 SO4 B 1 201 302 SO4 SO4 . 
J 5 SO4 C 1 301 301 SO4 SO4 . 
K 3 GNP C 1 302 250 GNP GNP . 
L 4 MG C 1 303 251 MG MG . 
M 5 SO4 D 1 201 304 SO4 SO4 . 
N 5 SO4 D 1 202 305 SO4 SO4 . 
O 6 HOH A 1 401 1 HOH HOH . 
O 6 HOH A 2 402 15 HOH HOH . 
O 6 HOH A 3 403 17 HOH HOH . 
O 6 HOH A 4 404 8 HOH HOH . 
P 6 HOH B 1 301 4 HOH HOH . 
P 6 HOH B 2 302 9 HOH HOH . 
Q 6 HOH C 1 401 11 HOH HOH . 
Q 6 HOH C 2 402 2 HOH HOH . 
Q 6 HOH C 3 403 5 HOH HOH . 
Q 6 HOH C 4 404 3 HOH HOH . 
R 6 HOH D 1 301 10 HOH HOH . 
R 6 HOH D 2 302 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . E 3 -5.543 54.329 -25.522 1 92.32 ? PG GNP 301 A 1 
HETATM 2 O O1G GNP . . . E 3 -6.12 54.244 -26.916 1 91.13 ? O1G GNP 301 A 1 
HETATM 3 O O2G GNP . . . E 3 -4.045 54.159 -25.442 1 96.55 ? O2G GNP 301 A 1 
HETATM 4 O O3G GNP . . . E 3 -6.359 53.36 -24.695 1 84.05 ? O3G GNP 301 A 1 
HETATM 5 N N3B GNP . . . E 3 -5.823 55.77 -24.919 1 81.9 ? N3B GNP 301 A 1 
HETATM 6 P PB GNP . . . E 3 -5.481 56.12 -23.408 1 80.72 ? PB GNP 301 A 1 
HETATM 7 O O1B GNP . . . E 3 -4.067 55.731 -23.196 1 84.37 ? O1B GNP 301 A 1 
HETATM 8 O O2B GNP . . . E 3 -6.488 55.55 -22.482 1 72.35 ? O2B GNP 301 A 1 
HETATM 9 O O3A GNP . . . E 3 -5.543 57.634 -23.269 1 80.39 ? O3A GNP 301 A 1 
HETATM 10 P PA GNP . . . E 3 -4.259 58.454 -23.264 1 83.95 ? PA GNP 301 A 1 
HETATM 11 O O1A GNP . . . E 3 -3.493 58.213 -24.51 1 86.64 ? O1A GNP 301 A 1 
HETATM 12 O O2A GNP . . . E 3 -3.572 58.199 -21.977 1 82.09 ? O2A GNP 301 A 1 
HETATM 13 O O5' GNP . . . E 3 -4.672 59.978 -23.265 1 75.84 ? O5' GNP 301 A 1 
HETATM 14 C C5' GNP . . . E 3 -5.786 60.391 -24.034 1 80.9 ? C5' GNP 301 A 1 
HETATM 15 C C4' GNP . . . E 3 -6.025 61.88 -23.873 1 78.17 ? C4' GNP 301 A 1 
HETATM 16 O O4' GNP . . . E 3 -6.514 62.151 -22.538 1 80.52 ? O4' GNP 301 A 1 
HETATM 17 C C3' GNP . . . E 3 -4.789 62.751 -24.068 1 77.87 ? C3' GNP 301 A 1 
HETATM 18 O O3' GNP . . . E 3 -5.04 63.699 -25.094 1 89.13 ? O3' GNP 301 A 1 
HETATM 19 C C2' GNP . . . E 3 -4.585 63.437 -22.719 1 77.42 ? C2' GNP 301 A 1 
HETATM 20 O O2' GNP . . . E 3 -4.182 64.786 -22.847 1 81.47 ? O2' GNP 301 A 1 
HETATM 21 C C1' GNP . . . E 3 -5.979 63.382 -22.115 1 78.63 ? C1' GNP 301 A 1 
HETATM 22 N N9 GNP . . . E 3 -5.962 63.408 -20.659 1 77.81 ? N9 GNP 301 A 1 
HETATM 23 C C8 GNP . . . E 3 -5.449 62.447 -19.824 1 76.44 ? C8 GNP 301 A 1 
HETATM 24 N N7 GNP . . . E 3 -5.573 62.739 -18.56 1 74.01 ? N7 GNP 301 A 1 
HETATM 25 C C5 GNP . . . E 3 -6.209 63.973 -18.558 1 81.64 ? C5 GNP 301 A 1 
HETATM 26 C C6 GNP . . . E 3 -6.608 64.787 -17.472 1 85.46 ? C6 GNP 301 A 1 
HETATM 27 O O6 GNP . . . E 3 -6.462 64.561 -16.261 1 84.41 ? O6 GNP 301 A 1 
HETATM 28 N N1 GNP . . . E 3 -7.228 65.962 -17.906 1 84.58 ? N1 GNP 301 A 1 
HETATM 29 C C2 GNP . . . E 3 -7.432 66.305 -19.225 1 87.02 ? C2 GNP 301 A 1 
HETATM 30 N N2 GNP . . . E 3 -8.042 67.479 -19.455 1 84.61 ? N2 GNP 301 A 1 
HETATM 31 N N3 GNP . . . E 3 -7.061 65.545 -20.251 1 91.07 ? N3 GNP 301 A 1 
HETATM 32 C C4 GNP . . . E 3 -6.457 64.399 -19.844 1 84.27 ? C4 GNP 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           32 
#