data_5CLW # _model_server_result.job_id Tui-rfeAy_kFuXcpod1gOw _model_server_result.datetime_utc '2025-03-04 15:03:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5clw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1008}' # _entry.id 5CLW # _exptl.entry_id 5CLW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CLW _cell.length_a 116.689 _cell.length_b 164.536 _cell.length_c 313.208 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CLW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? Monomeric 1 author_defined_assembly 1 ? Monomeric 1 author_defined_assembly 2 ? Monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,H 1 1 B,E,G,I 2 1 C,F,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 2 4 3 GLC GLC C1 O1 . O4 HO4 . sing 4 ? 2 5 4 GLC GLC C1 O1 . O4 HO4 . sing 5 ? 2 6 5 GLC GLC C1 O1 . O4 HO4 . sing 6 ? 2 7 6 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D GLC 1 D 1 GLC A 1007 GLC 2 n D GLC 2 D 2 GLC A 1006 GLC 2 n D GLC 3 D 3 GLC A 1005 GLC 2 n D GLC 4 D 4 GLC A 1004 GLC 2 n D GLC 5 D 5 GLC A 1003 GLC 2 n D GLC 6 D 6 GLC A 1002 GLC 2 n D GLC 7 D 7 GLC A 1001 GLC 2 n E GLC 1 E 1 GLC B 1007 GLC 2 n E GLC 2 E 2 GLC B 1006 GLC 2 n E GLC 3 E 3 GLC B 1005 GLC 2 n E GLC 4 E 4 GLC B 1004 GLC 2 n E GLC 5 E 5 GLC B 1003 GLC 2 n E GLC 6 E 6 GLC B 1002 GLC 2 n E GLC 7 E 7 GLC B 1001 GLC 2 n F GLC 1 F 1 GLC C 1007 GLC 2 n F GLC 2 F 2 GLC C 1006 GLC 2 n F GLC 3 F 3 GLC C 1005 GLC 2 n F GLC 4 F 4 GLC C 1004 GLC 2 n F GLC 5 F 5 GLC C 1003 GLC 2 n F GLC 6 F 6 GLC C 1002 GLC 2 n F GLC 7 F 7 GLC C 1001 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale2 D O4 GLC . D GLC 2 1_555 D C1 GLC . D GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale3 D O4 GLC . D GLC 3 1_555 D C1 GLC . D GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale4 D O4 GLC . D GLC 4 1_555 D C1 GLC . D GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale5 D O4 GLC . D GLC 5 1_555 D C1 GLC . D GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 D O4 GLC . D GLC 6 1_555 D C1 GLC . D GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 E O4 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale8 E O4 GLC . E GLC 2 1_555 E C1 GLC . E GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale9 E O4 GLC . E GLC 3 1_555 E C1 GLC . E GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale10 E O4 GLC . E GLC 4 1_555 E C1 GLC . E GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale11 E O4 GLC . E GLC 5 1_555 E C1 GLC . E GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale12 E O4 GLC . E GLC 6 1_555 E C1 GLC . E GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale13 F O4 GLC . F GLC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale14 F O4 GLC . F GLC 2 1_555 F C1 GLC . F GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 F O4 GLC . F GLC 3 1_555 F C1 GLC . F GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale16 F O4 GLC . F GLC 4 1_555 F C1 GLC . F GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale17 F O4 GLC . F GLC 5 1_555 F C1 GLC . F GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale18 F O4 GLC . F GLC 6 1_555 F C1 GLC . F GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CLW _atom_sites.fract_transf_matrix[1][1] 0.00857 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NA B 1 1008 1 NA NA . H 4 HOH A 1 1101 85 HOH HOH . H 4 HOH A 2 1102 128 HOH HOH . H 4 HOH A 3 1103 219 HOH HOH . H 4 HOH A 4 1104 12 HOH HOH . H 4 HOH A 5 1105 236 HOH HOH . H 4 HOH A 6 1106 69 HOH HOH . H 4 HOH A 7 1107 154 HOH HOH . H 4 HOH A 8 1108 108 HOH HOH . H 4 HOH A 9 1109 162 HOH HOH . H 4 HOH A 10 1110 61 HOH HOH . H 4 HOH A 11 1111 175 HOH HOH . H 4 HOH A 12 1112 53 HOH HOH . H 4 HOH A 13 1113 155 HOH HOH . H 4 HOH A 14 1114 146 HOH HOH . H 4 HOH A 15 1115 81 HOH HOH . H 4 HOH A 16 1116 240 HOH HOH . H 4 HOH A 17 1117 186 HOH HOH . H 4 HOH A 18 1118 11 HOH HOH . H 4 HOH A 19 1119 268 HOH HOH . H 4 HOH A 20 1120 92 HOH HOH . H 4 HOH A 21 1121 246 HOH HOH . H 4 HOH A 22 1122 147 HOH HOH . H 4 HOH A 23 1123 34 HOH HOH . H 4 HOH A 24 1124 58 HOH HOH . H 4 HOH A 25 1125 64 HOH HOH . H 4 HOH A 26 1126 121 HOH HOH . H 4 HOH A 27 1127 218 HOH HOH . H 4 HOH A 28 1128 167 HOH HOH . H 4 HOH A 29 1129 158 HOH HOH . H 4 HOH A 30 1130 114 HOH HOH . H 4 HOH A 31 1131 36 HOH HOH . H 4 HOH A 32 1132 102 HOH HOH . I 4 HOH B 1 1101 95 HOH HOH . I 4 HOH B 2 1102 10 HOH HOH . I 4 HOH B 3 1103 7 HOH HOH . I 4 HOH B 4 1104 1 HOH HOH . I 4 HOH B 5 1105 47 HOH HOH . I 4 HOH B 6 1106 39 HOH HOH . I 4 HOH B 7 1107 50 HOH HOH . I 4 HOH B 8 1108 190 HOH HOH . I 4 HOH B 9 1109 40 HOH HOH . I 4 HOH B 10 1110 24 HOH HOH . I 4 HOH B 11 1111 21 HOH HOH . I 4 HOH B 12 1112 86 HOH HOH . I 4 HOH B 13 1113 259 HOH HOH . I 4 HOH B 14 1114 79 HOH HOH . I 4 HOH B 15 1115 6 HOH HOH . I 4 HOH B 16 1116 5 HOH HOH . I 4 HOH B 17 1117 8 HOH HOH . I 4 HOH B 18 1118 187 HOH HOH . I 4 HOH B 19 1119 100 HOH HOH . I 4 HOH B 20 1120 222 HOH HOH . I 4 HOH B 21 1121 2 HOH HOH . I 4 HOH B 22 1122 68 HOH HOH . I 4 HOH B 23 1123 243 HOH HOH . I 4 HOH B 24 1124 208 HOH HOH . I 4 HOH B 25 1125 35 HOH HOH . I 4 HOH B 26 1126 91 HOH HOH . I 4 HOH B 27 1127 138 HOH HOH . I 4 HOH B 28 1128 197 HOH HOH . I 4 HOH B 29 1129 216 HOH HOH . I 4 HOH B 30 1130 73 HOH HOH . I 4 HOH B 31 1131 249 HOH HOH . I 4 HOH B 32 1132 22 HOH HOH . I 4 HOH B 33 1133 206 HOH HOH . I 4 HOH B 34 1134 54 HOH HOH . I 4 HOH B 35 1135 177 HOH HOH . I 4 HOH B 36 1136 156 HOH HOH . I 4 HOH B 37 1137 191 HOH HOH . I 4 HOH B 38 1138 134 HOH HOH . I 4 HOH B 39 1139 148 HOH HOH . I 4 HOH B 40 1140 89 HOH HOH . I 4 HOH B 41 1141 14 HOH HOH . I 4 HOH B 42 1142 172 HOH HOH . I 4 HOH B 43 1143 27 HOH HOH . I 4 HOH B 44 1144 30 HOH HOH . I 4 HOH B 45 1145 227 HOH HOH . I 4 HOH B 46 1146 31 HOH HOH . I 4 HOH B 47 1147 3 HOH HOH . I 4 HOH B 48 1148 84 HOH HOH . I 4 HOH B 49 1149 250 HOH HOH . I 4 HOH B 50 1150 67 HOH HOH . I 4 HOH B 51 1151 48 HOH HOH . I 4 HOH B 52 1152 137 HOH HOH . I 4 HOH B 53 1153 112 HOH HOH . I 4 HOH B 54 1154 118 HOH HOH . I 4 HOH B 55 1155 32 HOH HOH . I 4 HOH B 56 1156 38 HOH HOH . I 4 HOH B 57 1157 4 HOH HOH . I 4 HOH B 58 1158 29 HOH HOH . I 4 HOH B 59 1159 15 HOH HOH . I 4 HOH B 60 1160 94 HOH HOH . I 4 HOH B 61 1161 56 HOH HOH . I 4 HOH B 62 1162 28 HOH HOH . I 4 HOH B 63 1163 127 HOH HOH . I 4 HOH B 64 1164 109 HOH HOH . I 4 HOH B 65 1165 63 HOH HOH . I 4 HOH B 66 1166 52 HOH HOH . I 4 HOH B 67 1167 33 HOH HOH . I 4 HOH B 68 1168 181 HOH HOH . I 4 HOH B 69 1169 204 HOH HOH . I 4 HOH B 70 1170 9 HOH HOH . I 4 HOH B 71 1171 59 HOH HOH . I 4 HOH B 72 1172 65 HOH HOH . I 4 HOH B 73 1173 122 HOH HOH . I 4 HOH B 74 1174 60 HOH HOH . I 4 HOH B 75 1175 135 HOH HOH . I 4 HOH B 76 1176 23 HOH HOH . I 4 HOH B 77 1177 93 HOH HOH . I 4 HOH B 78 1178 202 HOH HOH . I 4 HOH B 79 1179 71 HOH HOH . I 4 HOH B 80 1180 174 HOH HOH . I 4 HOH B 81 1181 125 HOH HOH . I 4 HOH B 82 1182 20 HOH HOH . I 4 HOH B 83 1183 161 HOH HOH . I 4 HOH B 84 1184 37 HOH HOH . I 4 HOH B 85 1185 269 HOH HOH . I 4 HOH B 86 1186 43 HOH HOH . I 4 HOH B 87 1187 153 HOH HOH . I 4 HOH B 88 1188 46 HOH HOH . I 4 HOH B 89 1189 194 HOH HOH . I 4 HOH B 90 1190 110 HOH HOH . I 4 HOH B 91 1191 80 HOH HOH . I 4 HOH B 92 1192 211 HOH HOH . I 4 HOH B 93 1193 44 HOH HOH . I 4 HOH B 94 1194 13 HOH HOH . I 4 HOH B 95 1195 42 HOH HOH . I 4 HOH B 96 1196 229 HOH HOH . I 4 HOH B 97 1197 97 HOH HOH . I 4 HOH B 98 1198 256 HOH HOH . I 4 HOH B 99 1199 49 HOH HOH . I 4 HOH B 100 1200 198 HOH HOH . I 4 HOH B 101 1201 192 HOH HOH . I 4 HOH B 102 1202 157 HOH HOH . I 4 HOH B 103 1203 170 HOH HOH . I 4 HOH B 104 1204 184 HOH HOH . I 4 HOH B 105 1205 96 HOH HOH . I 4 HOH B 106 1206 66 HOH HOH . I 4 HOH B 107 1207 233 HOH HOH . J 4 HOH C 1 1101 101 HOH HOH . J 4 HOH C 2 1102 178 HOH HOH . J 4 HOH C 3 1103 19 HOH HOH . J 4 HOH C 4 1104 25 HOH HOH . J 4 HOH C 5 1105 120 HOH HOH . J 4 HOH C 6 1106 111 HOH HOH . J 4 HOH C 7 1107 76 HOH HOH . J 4 HOH C 8 1108 82 HOH HOH . J 4 HOH C 9 1109 72 HOH HOH . J 4 HOH C 10 1110 51 HOH HOH . J 4 HOH C 11 1111 144 HOH HOH . J 4 HOH C 12 1112 105 HOH HOH . J 4 HOH C 13 1113 75 HOH HOH . J 4 HOH C 14 1114 90 HOH HOH . J 4 HOH C 15 1115 188 HOH HOH . J 4 HOH C 16 1116 132 HOH HOH . J 4 HOH C 17 1117 142 HOH HOH . J 4 HOH C 18 1118 77 HOH HOH . J 4 HOH C 19 1119 126 HOH HOH . J 4 HOH C 20 1120 151 HOH HOH . J 4 HOH C 21 1121 209 HOH HOH . J 4 HOH C 22 1122 145 HOH HOH . J 4 HOH C 23 1123 45 HOH HOH . J 4 HOH C 24 1124 193 HOH HOH . J 4 HOH C 25 1125 55 HOH HOH . J 4 HOH C 26 1126 133 HOH HOH . J 4 HOH C 27 1127 166 HOH HOH . J 4 HOH C 28 1128 16 HOH HOH . J 4 HOH C 29 1129 159 HOH HOH . J 4 HOH C 30 1130 62 HOH HOH . J 4 HOH C 31 1131 18 HOH HOH . J 4 HOH C 32 1132 228 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.669 _atom_site.Cartn_y 49.086 _atom_site.Cartn_z 156.505 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.01 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1008 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 182 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 45 _model_server_stats.element_count 1 #