data_5CLX # _model_server_result.job_id 9nRJZ3mY_ECz5BWyl2bmHg _model_server_result.datetime_utc '2025-02-27 02:40:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5clx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5CLX # _exptl.entry_id 5CLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CLX _cell.length_a 42.774 _cell.length_b 85.802 _cell.length_c 64.153 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 110 n n C1 C2 GOL sing 111 n n C1 H11 GOL sing 112 n n C1 H12 GOL sing 113 n n O1 HO1 GOL sing 114 n n C2 O2 GOL sing 115 n n C2 C3 GOL sing 116 n n C2 H2 GOL sing 117 n n O2 HO2 GOL sing 118 n n C3 O3 GOL sing 119 n n C3 H31 GOL sing 120 n n C3 H32 GOL sing 121 n n O3 HO3 GOL sing 122 n n # _atom_sites.entry_id 5CLX _atom_sites.fract_transf_matrix[1][1] 0.023379 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015588 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 201 1 GOL GOL . D 3 HOH A 1 201 93 HOH HOH . D 3 HOH A 2 202 49 HOH HOH . D 3 HOH A 3 203 37 HOH HOH . D 3 HOH A 4 204 99 HOH HOH . D 3 HOH A 5 205 39 HOH HOH . D 3 HOH A 6 206 4 HOH HOH . D 3 HOH A 7 207 123 HOH HOH . D 3 HOH A 8 208 47 HOH HOH . D 3 HOH A 9 209 15 HOH HOH . D 3 HOH A 10 210 46 HOH HOH . D 3 HOH A 11 211 102 HOH HOH . D 3 HOH A 12 212 9 HOH HOH . D 3 HOH A 13 213 127 HOH HOH . D 3 HOH A 14 214 2 HOH HOH . D 3 HOH A 15 215 18 HOH HOH . D 3 HOH A 16 216 35 HOH HOH . D 3 HOH A 17 217 50 HOH HOH . D 3 HOH A 18 218 25 HOH HOH . D 3 HOH A 19 219 110 HOH HOH . D 3 HOH A 20 220 16 HOH HOH . D 3 HOH A 21 221 32 HOH HOH . D 3 HOH A 22 222 23 HOH HOH . D 3 HOH A 23 223 144 HOH HOH . D 3 HOH A 24 224 13 HOH HOH . D 3 HOH A 25 225 17 HOH HOH . D 3 HOH A 26 226 26 HOH HOH . D 3 HOH A 27 227 42 HOH HOH . D 3 HOH A 28 228 1 HOH HOH . D 3 HOH A 29 229 27 HOH HOH . D 3 HOH A 30 230 44 HOH HOH . D 3 HOH A 31 231 130 HOH HOH . D 3 HOH A 32 232 10 HOH HOH . D 3 HOH A 33 233 7 HOH HOH . D 3 HOH A 34 234 11 HOH HOH . D 3 HOH A 35 235 8 HOH HOH . D 3 HOH A 36 236 92 HOH HOH . D 3 HOH A 37 237 133 HOH HOH . D 3 HOH A 38 238 30 HOH HOH . D 3 HOH A 39 239 28 HOH HOH . D 3 HOH A 40 240 91 HOH HOH . D 3 HOH A 41 241 3 HOH HOH . D 3 HOH A 42 242 48 HOH HOH . D 3 HOH A 43 243 89 HOH HOH . D 3 HOH A 44 244 81 HOH HOH . D 3 HOH A 45 245 21 HOH HOH . D 3 HOH A 46 246 20 HOH HOH . D 3 HOH A 47 247 117 HOH HOH . D 3 HOH A 48 248 31 HOH HOH . D 3 HOH A 49 249 5 HOH HOH . D 3 HOH A 50 250 119 HOH HOH . D 3 HOH A 51 251 14 HOH HOH . D 3 HOH A 52 252 98 HOH HOH . D 3 HOH A 53 253 103 HOH HOH . D 3 HOH A 54 254 121 HOH HOH . D 3 HOH A 55 255 29 HOH HOH . D 3 HOH A 56 256 115 HOH HOH . D 3 HOH A 57 257 19 HOH HOH . D 3 HOH A 58 258 22 HOH HOH . D 3 HOH A 59 259 131 HOH HOH . D 3 HOH A 60 260 120 HOH HOH . D 3 HOH A 61 261 104 HOH HOH . D 3 HOH A 62 262 126 HOH HOH . D 3 HOH A 63 263 122 HOH HOH . D 3 HOH A 64 264 12 HOH HOH . D 3 HOH A 65 265 114 HOH HOH . D 3 HOH A 66 266 90 HOH HOH . D 3 HOH A 67 267 105 HOH HOH . D 3 HOH A 68 268 124 HOH HOH . D 3 HOH A 69 269 88 HOH HOH . D 3 HOH A 70 270 142 HOH HOH . D 3 HOH A 71 271 118 HOH HOH . D 3 HOH A 72 272 116 HOH HOH . D 3 HOH A 73 273 87 HOH HOH . D 3 HOH A 74 274 111 HOH HOH . E 3 HOH B 1 301 140 HOH HOH . E 3 HOH B 2 302 75 HOH HOH . E 3 HOH B 3 303 71 HOH HOH . E 3 HOH B 4 304 96 HOH HOH . E 3 HOH B 5 305 55 HOH HOH . E 3 HOH B 6 306 24 HOH HOH . E 3 HOH B 7 307 128 HOH HOH . E 3 HOH B 8 308 52 HOH HOH . E 3 HOH B 9 309 139 HOH HOH . E 3 HOH B 10 310 67 HOH HOH . E 3 HOH B 11 311 43 HOH HOH . E 3 HOH B 12 312 41 HOH HOH . E 3 HOH B 13 313 60 HOH HOH . E 3 HOH B 14 314 109 HOH HOH . E 3 HOH B 15 315 61 HOH HOH . E 3 HOH B 16 316 129 HOH HOH . E 3 HOH B 17 317 86 HOH HOH . E 3 HOH B 18 318 69 HOH HOH . E 3 HOH B 19 319 68 HOH HOH . E 3 HOH B 20 320 77 HOH HOH . E 3 HOH B 21 321 6 HOH HOH . E 3 HOH B 22 322 83 HOH HOH . E 3 HOH B 23 323 36 HOH HOH . E 3 HOH B 24 324 38 HOH HOH . E 3 HOH B 25 325 78 HOH HOH . E 3 HOH B 26 326 59 HOH HOH . E 3 HOH B 27 327 85 HOH HOH . E 3 HOH B 28 328 76 HOH HOH . E 3 HOH B 29 329 54 HOH HOH . E 3 HOH B 30 330 101 HOH HOH . E 3 HOH B 31 331 132 HOH HOH . E 3 HOH B 32 332 53 HOH HOH . E 3 HOH B 33 333 33 HOH HOH . E 3 HOH B 34 334 66 HOH HOH . E 3 HOH B 35 335 134 HOH HOH . E 3 HOH B 36 336 58 HOH HOH . E 3 HOH B 37 337 70 HOH HOH . E 3 HOH B 38 338 65 HOH HOH . E 3 HOH B 39 339 34 HOH HOH . E 3 HOH B 40 340 74 HOH HOH . E 3 HOH B 41 341 51 HOH HOH . E 3 HOH B 42 342 62 HOH HOH . E 3 HOH B 43 343 79 HOH HOH . E 3 HOH B 44 344 108 HOH HOH . E 3 HOH B 45 345 57 HOH HOH . E 3 HOH B 46 346 73 HOH HOH . E 3 HOH B 47 347 63 HOH HOH . E 3 HOH B 48 348 145 HOH HOH . E 3 HOH B 49 349 94 HOH HOH . E 3 HOH B 50 350 84 HOH HOH . E 3 HOH B 51 351 106 HOH HOH . E 3 HOH B 52 352 95 HOH HOH . E 3 HOH B 53 353 136 HOH HOH . E 3 HOH B 54 354 64 HOH HOH . E 3 HOH B 55 355 56 HOH HOH . E 3 HOH B 56 356 72 HOH HOH . E 3 HOH B 57 357 125 HOH HOH . E 3 HOH B 58 358 138 HOH HOH . E 3 HOH B 59 359 143 HOH HOH . E 3 HOH B 60 360 80 HOH HOH . E 3 HOH B 61 361 137 HOH HOH . E 3 HOH B 62 362 45 HOH HOH . E 3 HOH B 63 363 40 HOH HOH . E 3 HOH B 64 364 82 HOH HOH . E 3 HOH B 65 365 135 HOH HOH . E 3 HOH B 66 366 141 HOH HOH . E 3 HOH B 67 367 112 HOH HOH . E 3 HOH B 68 368 100 HOH HOH . E 3 HOH B 69 369 107 HOH HOH . E 3 HOH B 70 370 97 HOH HOH . E 3 HOH B 71 371 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . C 2 -4.676 1.304 15.689 0.5 18.2 ? C1 GOL 201 B 1 HETATM 2 C C1 GOL . B . C 2 -2.301 -0.308 15.634 0.5 16.76 ? C1 GOL 201 B 1 HETATM 3 O O1 GOL . A . C 2 -5.571 2.185 14.905 0.5 11.94 ? O1 GOL 201 B 1 HETATM 4 O O1 GOL . B . C 2 -2.047 0.719 16.606 0.5 13.71 ? O1 GOL 201 B 1 HETATM 5 C C2 GOL . A . C 2 -3.299 1.787 16.041 0.5 21.38 ? C2 GOL 201 B 1 HETATM 6 C C2 GOL . B . C 2 -3.317 -1.309 16.144 0.5 16.13 ? C2 GOL 201 B 1 HETATM 7 O O2 GOL . A . C 2 -3.53 2.764 16.959 0.5 14.75 ? O2 GOL 201 B 1 HETATM 8 O O2 GOL . B . C 2 -3.471 -2.347 15.249 0.5 13.2 ? O2 GOL 201 B 1 HETATM 9 C C3 GOL . A . C 2 -2.36 0.736 16.553 0.5 19.33 ? C3 GOL 201 B 1 HETATM 10 C C3 GOL . B . C 2 -4.717 -0.741 16.393 0.5 15.76 ? C3 GOL 201 B 1 HETATM 11 O O3 GOL . A . C 2 -2.203 -0.363 15.614 0.5 18.51 ? O3 GOL 201 B 1 HETATM 12 O O3 GOL . B . C 2 -5.585 -1.473 17.359 0.5 14.73 ? O3 GOL 201 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #