data_5CLY # _model_server_result.job_id UjpzWBGOciIdPjno3SQ1sw _model_server_result.datetime_utc '2025-02-27 02:46:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5CLY # _exptl.entry_id 5CLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CLY _cell.length_a 43.017 _cell.length_b 85.929 _cell.length_c 63.964 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 110 n n C1 C2 GOL sing 111 n n C1 H11 GOL sing 112 n n C1 H12 GOL sing 113 n n O1 HO1 GOL sing 114 n n C2 O2 GOL sing 115 n n C2 C3 GOL sing 116 n n C2 H2 GOL sing 117 n n O2 HO2 GOL sing 118 n n C3 O3 GOL sing 119 n n C3 H31 GOL sing 120 n n C3 H32 GOL sing 121 n n O3 HO3 GOL sing 122 n n # _atom_sites.entry_id 5CLY _atom_sites.fract_transf_matrix[1][1] 0.023247 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 201 1 GOL GOL . D 3 HOH A 1 201 185 HOH HOH . D 3 HOH A 2 202 52 HOH HOH . D 3 HOH A 3 203 131 HOH HOH . D 3 HOH A 4 204 66 HOH HOH . D 3 HOH A 5 205 61 HOH HOH . D 3 HOH A 6 206 55 HOH HOH . D 3 HOH A 7 207 153 HOH HOH . D 3 HOH A 8 208 132 HOH HOH . D 3 HOH A 9 209 163 HOH HOH . D 3 HOH A 10 210 110 HOH HOH . D 3 HOH A 11 211 49 HOH HOH . D 3 HOH A 12 212 151 HOH HOH . D 3 HOH A 13 213 152 HOH HOH . D 3 HOH A 14 214 12 HOH HOH . D 3 HOH A 15 215 101 HOH HOH . D 3 HOH A 16 216 39 HOH HOH . D 3 HOH A 17 217 67 HOH HOH . D 3 HOH A 18 218 11 HOH HOH . D 3 HOH A 19 219 103 HOH HOH . D 3 HOH A 20 220 54 HOH HOH . D 3 HOH A 21 221 44 HOH HOH . D 3 HOH A 22 222 51 HOH HOH . D 3 HOH A 23 223 36 HOH HOH . D 3 HOH A 24 224 64 HOH HOH . D 3 HOH A 25 225 45 HOH HOH . D 3 HOH A 26 226 94 HOH HOH . D 3 HOH A 27 227 85 HOH HOH . D 3 HOH A 28 228 155 HOH HOH . D 3 HOH A 29 229 96 HOH HOH . D 3 HOH A 30 230 74 HOH HOH . D 3 HOH A 31 231 108 HOH HOH . D 3 HOH A 32 232 95 HOH HOH . D 3 HOH A 33 233 100 HOH HOH . D 3 HOH A 34 234 47 HOH HOH . D 3 HOH A 35 235 176 HOH HOH . D 3 HOH A 36 236 72 HOH HOH . D 3 HOH A 37 237 134 HOH HOH . D 3 HOH A 38 238 105 HOH HOH . D 3 HOH A 39 239 98 HOH HOH . D 3 HOH A 40 240 77 HOH HOH . D 3 HOH A 41 241 13 HOH HOH . D 3 HOH A 42 242 93 HOH HOH . D 3 HOH A 43 243 91 HOH HOH . D 3 HOH A 44 244 128 HOH HOH . D 3 HOH A 45 245 69 HOH HOH . D 3 HOH A 46 246 142 HOH HOH . D 3 HOH A 47 247 65 HOH HOH . D 3 HOH A 48 248 178 HOH HOH . D 3 HOH A 49 249 99 HOH HOH . D 3 HOH A 50 250 40 HOH HOH . D 3 HOH A 51 251 89 HOH HOH . D 3 HOH A 52 252 71 HOH HOH . D 3 HOH A 53 253 70 HOH HOH . D 3 HOH A 54 254 150 HOH HOH . D 3 HOH A 55 255 120 HOH HOH . D 3 HOH A 56 256 114 HOH HOH . D 3 HOH A 57 257 80 HOH HOH . D 3 HOH A 58 258 181 HOH HOH . D 3 HOH A 59 259 175 HOH HOH . D 3 HOH A 60 260 75 HOH HOH . D 3 HOH A 61 261 135 HOH HOH . D 3 HOH A 62 262 82 HOH HOH . D 3 HOH A 63 263 97 HOH HOH . D 3 HOH A 64 264 106 HOH HOH . D 3 HOH A 65 265 115 HOH HOH . D 3 HOH A 66 266 154 HOH HOH . D 3 HOH A 67 267 81 HOH HOH . D 3 HOH A 68 268 78 HOH HOH . D 3 HOH A 69 269 109 HOH HOH . D 3 HOH A 70 270 92 HOH HOH . D 3 HOH A 71 271 86 HOH HOH . D 3 HOH A 72 272 68 HOH HOH . D 3 HOH A 73 273 111 HOH HOH . D 3 HOH A 74 274 90 HOH HOH . D 3 HOH A 75 275 88 HOH HOH . D 3 HOH A 76 276 83 HOH HOH . D 3 HOH A 77 277 133 HOH HOH . D 3 HOH A 78 278 143 HOH HOH . D 3 HOH A 79 279 73 HOH HOH . D 3 HOH A 80 280 177 HOH HOH . D 3 HOH A 81 281 130 HOH HOH . D 3 HOH A 82 282 84 HOH HOH . D 3 HOH A 83 283 140 HOH HOH . D 3 HOH A 84 284 188 HOH HOH . D 3 HOH A 85 285 50 HOH HOH . D 3 HOH A 86 286 138 HOH HOH . D 3 HOH A 87 287 104 HOH HOH . D 3 HOH A 88 288 76 HOH HOH . D 3 HOH A 89 289 79 HOH HOH . D 3 HOH A 90 290 102 HOH HOH . D 3 HOH A 91 291 129 HOH HOH . D 3 HOH A 92 292 107 HOH HOH . D 3 HOH A 93 293 173 HOH HOH . D 3 HOH A 94 294 141 HOH HOH . D 3 HOH A 95 295 87 HOH HOH . D 3 HOH A 96 296 139 HOH HOH . D 3 HOH A 97 297 183 HOH HOH . D 3 HOH A 98 298 37 HOH HOH . E 3 HOH B 1 301 186 HOH HOH . E 3 HOH B 2 302 124 HOH HOH . E 3 HOH B 3 303 57 HOH HOH . E 3 HOH B 4 304 31 HOH HOH . E 3 HOH B 5 305 112 HOH HOH . E 3 HOH B 6 306 113 HOH HOH . E 3 HOH B 7 307 2 HOH HOH . E 3 HOH B 8 308 117 HOH HOH . E 3 HOH B 9 309 6 HOH HOH . E 3 HOH B 10 310 144 HOH HOH . E 3 HOH B 11 311 160 HOH HOH . E 3 HOH B 12 312 29 HOH HOH . E 3 HOH B 13 313 46 HOH HOH . E 3 HOH B 14 314 182 HOH HOH . E 3 HOH B 15 315 56 HOH HOH . E 3 HOH B 16 316 53 HOH HOH . E 3 HOH B 17 317 34 HOH HOH . E 3 HOH B 18 318 15 HOH HOH . E 3 HOH B 19 319 26 HOH HOH . E 3 HOH B 20 320 23 HOH HOH . E 3 HOH B 21 321 24 HOH HOH . E 3 HOH B 22 322 35 HOH HOH . E 3 HOH B 23 323 27 HOH HOH . E 3 HOH B 24 324 16 HOH HOH . E 3 HOH B 25 325 33 HOH HOH . E 3 HOH B 26 326 123 HOH HOH . E 3 HOH B 27 327 63 HOH HOH . E 3 HOH B 28 328 4 HOH HOH . E 3 HOH B 29 329 5 HOH HOH . E 3 HOH B 30 330 1 HOH HOH . E 3 HOH B 31 331 179 HOH HOH . E 3 HOH B 32 332 172 HOH HOH . E 3 HOH B 33 333 14 HOH HOH . E 3 HOH B 34 334 7 HOH HOH . E 3 HOH B 35 335 187 HOH HOH . E 3 HOH B 36 336 18 HOH HOH . E 3 HOH B 37 337 119 HOH HOH . E 3 HOH B 38 338 157 HOH HOH . E 3 HOH B 39 339 158 HOH HOH . E 3 HOH B 40 340 21 HOH HOH . E 3 HOH B 41 341 9 HOH HOH . E 3 HOH B 42 342 145 HOH HOH . E 3 HOH B 43 343 19 HOH HOH . E 3 HOH B 44 344 161 HOH HOH . E 3 HOH B 45 345 59 HOH HOH . E 3 HOH B 46 346 25 HOH HOH . E 3 HOH B 47 347 22 HOH HOH . E 3 HOH B 48 348 10 HOH HOH . E 3 HOH B 49 349 8 HOH HOH . E 3 HOH B 50 350 136 HOH HOH . E 3 HOH B 51 351 121 HOH HOH . E 3 HOH B 52 352 17 HOH HOH . E 3 HOH B 53 353 43 HOH HOH . E 3 HOH B 54 354 38 HOH HOH . E 3 HOH B 55 355 171 HOH HOH . E 3 HOH B 56 356 125 HOH HOH . E 3 HOH B 57 357 60 HOH HOH . E 3 HOH B 58 358 116 HOH HOH . E 3 HOH B 59 359 3 HOH HOH . E 3 HOH B 60 360 137 HOH HOH . E 3 HOH B 61 361 118 HOH HOH . E 3 HOH B 62 362 184 HOH HOH . E 3 HOH B 63 363 30 HOH HOH . E 3 HOH B 64 364 174 HOH HOH . E 3 HOH B 65 365 180 HOH HOH . E 3 HOH B 66 366 62 HOH HOH . E 3 HOH B 67 367 28 HOH HOH . E 3 HOH B 68 368 41 HOH HOH . E 3 HOH B 69 369 58 HOH HOH . E 3 HOH B 70 370 189 HOH HOH . E 3 HOH B 71 371 48 HOH HOH . E 3 HOH B 72 372 122 HOH HOH . E 3 HOH B 73 373 127 HOH HOH . E 3 HOH B 74 374 20 HOH HOH . E 3 HOH B 75 375 159 HOH HOH . E 3 HOH B 76 376 126 HOH HOH . E 3 HOH B 77 377 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . C 2 -4.873 1.363 15.904 0.5 25.4 ? C1 GOL 201 B 1 HETATM 2 C C1 GOL . B . C 2 -5.162 -0.804 16.058 0.5 24.93 ? C1 GOL 201 B 1 HETATM 3 O O1 GOL . A . C 2 -5.549 2.126 14.897 0.5 17.23 ? O1 GOL 201 B 1 HETATM 4 O O1 GOL . B . C 2 -5.704 -1.42 17.244 0.5 19.17 ? O1 GOL 201 B 1 HETATM 5 C C2 GOL . A . C 2 -3.395 1.723 15.965 0.5 27.76 ? C2 GOL 201 B 1 HETATM 6 C C2 GOL . B . C 2 -3.692 -1.149 15.994 0.5 25.71 ? C2 GOL 201 B 1 HETATM 7 O O2 GOL . A . C 2 -3.327 2.784 16.788 0.5 20.52 ? O2 GOL 201 B 1 HETATM 8 O O2 GOL . B . C 2 -3.556 -2.293 15.23 0.5 20.87 ? O2 GOL 201 B 1 HETATM 9 C C3 GOL . A . C 2 -2.436 0.729 16.578 0.5 27.04 ? C3 GOL 201 B 1 HETATM 10 C C3 GOL . B . C 2 -2.802 -0.046 15.431 0.5 26.08 ? C3 GOL 201 B 1 HETATM 11 O O3 GOL . A . C 2 -1.878 -0.248 15.656 0.5 21.8 ? O3 GOL 201 B 1 HETATM 12 O O3 GOL . B . C 2 -1.881 0.494 16.409 0.5 22.38 ? O3 GOL 201 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 12 #