data_5CMR # _model_server_result.job_id XRFc09cprpVqnOx816k6kg _model_server_result.datetime_utc '2025-02-28 23:18:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cmr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 5CMR # _exptl.entry_id 5CMR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.16 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-dihydroxybenzene-1,4-dicarboxamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CMR _cell.length_a 155.32 _cell.length_b 155.32 _cell.length_c 155.32 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CMR _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 27 A GLU 27 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc2 A OE1 GLU 62 A GLU 62 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc3 A OE1 GLU 62 A GLU 62 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc4 A OE2 GLU 62 A GLU 62 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc5 A ND1 HIS 65 A HIS 65 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc6 A OE1 GLU 107 A GLU 107 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc7 A OE2 GLU 107 A GLU 107 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc8 A NE2 HIS 122 A HIS 122 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc9 A NE2 HIS 122 A HIS 122 1_555 C ZN ZN . A ZN 202 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc10 A OD1 ASP 131 A ASP 131 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc11 A OD1 ASP 131 A ASP 131 1_555 D NA NA . A NA 203 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc12 A OE1 GLU 134 A GLU 134 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc13 A OE1 GLU 134 A GLU 134 1_555 D NA NA . A NA 203 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc14 A OE1 GLU 134 A GLU 134 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc15 A OE2 GLU 134 A GLU 134 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc16 A OE1 GLU 134 A GLU 134 1_555 E NA NA . A NA 204 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc17 A OE2 GLU 134 A GLU 134 1_555 E NA NA . A NA 204 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc18 A OE1 GLN 141 A GLN 141 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc19 C ZN ZN . A ZN 202 1_555 G OAN BYD . A BYD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc20 C ZN ZN . A ZN 202 1_555 G OAM BYD . A BYD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc21 C ZN ZN . A ZN 202 1_555 G OAN BYD . A BYD 206 9_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc22 C ZN ZN . A ZN 202 1_555 G OAJ BYD . A BYD 206 38_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc23 C ZN ZN . A ZN 202 1_555 G OAM BYD . A BYD 206 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc24 C ZN ZN . A ZN 202 1_555 G OAH BYD . A BYD 206 38_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? # _chem_comp.formula 'C8 H8 N2 O4' _chem_comp.formula_weight 196.16 _chem_comp.id BYD _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-dihydroxybenzene-1,4-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAN NAL BYD sing 70 n n NAL CAK BYD sing 71 n n OAM CAK BYD doub 72 n n CAK CAC BYD sing 73 n n CAD CAC BYD doub 74 n y CAD CAE BYD sing 75 n y CAC CAB BYD sing 76 n y CAE CAF BYD doub 77 n y CAB CAA BYD doub 78 n y CAF CAA BYD sing 79 n y CAF CAG BYD sing 80 n n OAH CAG BYD doub 81 n n CAG NAI BYD sing 82 n n NAI OAJ BYD sing 83 n n CAA HAA BYD sing 84 n n CAB HAB BYD sing 85 n n CAD HAD BYD sing 86 n n CAE HAE BYD sing 87 n n NAI HAI BYD sing 88 n n NAL HAL BYD sing 89 n n OAJ HAJ BYD sing 90 n n OAN HAN BYD sing 91 n n # _atom_sites.entry_id 5CMR _atom_sites.fract_transf_matrix[1][1] 0.006438 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 178 ZN ZN . C 2 ZN A 1 202 179 ZN ZN . D 3 NA A 1 203 180 NA NA . E 3 NA A 1 204 181 NA NA . F 3 NA A 1 205 182 NA NA . G 4 BYD A 1 206 183 BYD BYD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA BYD . . . G 4 38.362 39.131 40.159 0.16 77.72 ? CAA BYD 206 A 1 HETATM 2 C CAB BYD . . . G 4 37.487 38.516 39.275 0.16 77.69 ? CAB BYD 206 A 1 HETATM 3 C CAC BYD . . . G 4 37.909 38.212 37.986 0.16 66.46 ? CAC BYD 206 A 1 HETATM 4 C CAD BYD . . . G 4 39.199 38.523 37.573 0.16 78.61 ? CAD BYD 206 A 1 HETATM 5 C CAE BYD . . . G 4 40.074 39.142 38.456 0.16 78.7 ? CAE BYD 206 A 1 HETATM 6 C CAF BYD . . . G 4 39.652 39.445 39.745 0.16 65.52 ? CAF BYD 206 A 1 HETATM 7 C CAG BYD . . . G 4 40.522 40.059 40.631 0.16 70.59 ? CAG BYD 206 A 1 HETATM 8 C CAK BYD . . . G 4 37.03 37.598 37.11 0.16 72.94 ? CAK BYD 206 A 1 HETATM 9 N NAI BYD . . . G 4 40.99 39.257 41.597 0.16 80.5 ? NAI BYD 206 A 1 HETATM 10 N NAL BYD . . . G 4 36.06 38.396 36.646 0.16 78.07 ? NAL BYD 206 A 1 HETATM 11 O OAH BYD . . . G 4 40.816 41.248 40.514 0.16 76.57 ? OAH BYD 206 A 1 HETATM 12 O OAJ BYD . . . G 4 41.893 39.841 42.545 0.16 84.45 ? OAJ BYD 206 A 1 HETATM 13 O OAM BYD . . . G 4 37.156 36.412 36.808 0.16 76.44 ? OAM BYD 206 A 1 HETATM 14 O OAN BYD . . . G 4 35.121 37.813 35.741 0.16 85.53 ? OAN BYD 206 A 1 HETATM 15 H HAA BYD . . . G 4 38.038 39.373 41.172 0.16 93.26 ? HAA BYD 206 A 1 HETATM 16 H HAB BYD . . . G 4 36.474 38.268 39.592 0.16 93.22 ? HAB BYD 206 A 1 HETATM 17 H HAD BYD . . . G 4 39.522 38.284 36.56 0.16 94.33 ? HAD BYD 206 A 1 HETATM 18 H HAE BYD . . . G 4 41.087 39.389 38.14 0.16 94.44 ? HAE BYD 206 A 1 HETATM 19 H HAI BYD . . . G 4 40.737 38.293 41.676 0.16 96.6 ? HAI BYD 206 A 1 HETATM 20 H HAL BYD . . . G 4 35.973 39.358 36.906 0.16 93.68 ? HAL BYD 206 A 1 HETATM 21 H HAJ BYD . . . G 4 42.171 39.149 43.211 0.16 101.34 ? HAJ BYD 206 A 1 HETATM 22 H HAN BYD . . . G 4 34.45 38.501 35.466 0.16 102.64 ? HAN BYD 206 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 22 #