data_5CMU
#
_model_server_result.job_id            pfN2zDTfKJqHn05E3HaAiQ 
_model_server_result.datetime_utc      '2025-01-10 15:03:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cmu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":101}' 
#
_entry.id    5CMU 
#
_exptl.entry_id    5CMU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.97 
_cell.angle_gamma         90 
_cell.entry_id            5CMU 
_cell.length_a            36.617 
_cell.length_b            58.811 
_cell.length_c            51.439 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CMU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     5CMU 
_atom_sites.fract_transf_matrix[1][1]    0.02731 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001896 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017004 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019487 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GOL A 1 101 92 GOL GOL . 
E 2 GOL B 1 101 94 GOL GOL . 
F 2 GOL B 1 102 95 GOL GOL . 
G 2 GOL C 1 101 91 GOL GOL . 
H 2 GOL C 1 102 96 GOL GOL . 
I 3 HOH A 1 201 8 HOH HOH . 
I 3 HOH A 2 202 31 HOH HOH . 
I 3 HOH A 3 203 11 HOH HOH . 
I 3 HOH A 4 204 40 HOH HOH . 
I 3 HOH A 5 205 12 HOH HOH . 
I 3 HOH A 6 206 9 HOH HOH . 
I 3 HOH A 7 207 50 HOH HOH . 
I 3 HOH A 8 208 43 HOH HOH . 
I 3 HOH A 9 209 15 HOH HOH . 
I 3 HOH A 10 210 63 HOH HOH . 
I 3 HOH A 11 211 36 HOH HOH . 
I 3 HOH A 12 212 22 HOH HOH . 
I 3 HOH A 13 213 19 HOH HOH . 
J 3 HOH B 1 201 54 HOH HOH . 
J 3 HOH B 2 202 41 HOH HOH . 
J 3 HOH B 3 203 34 HOH HOH . 
J 3 HOH B 4 204 69 HOH HOH . 
J 3 HOH B 5 205 62 HOH HOH . 
J 3 HOH B 6 206 38 HOH HOH . 
J 3 HOH B 7 207 23 HOH HOH . 
J 3 HOH B 8 208 67 HOH HOH . 
J 3 HOH B 9 209 10 HOH HOH . 
J 3 HOH B 10 210 1 HOH HOH . 
J 3 HOH B 11 211 33 HOH HOH . 
J 3 HOH B 12 212 55 HOH HOH . 
J 3 HOH B 13 213 61 HOH HOH . 
J 3 HOH B 14 214 5 HOH HOH . 
J 3 HOH B 15 215 20 HOH HOH . 
J 3 HOH B 16 216 6 HOH HOH . 
J 3 HOH B 17 217 51 HOH HOH . 
J 3 HOH B 18 218 30 HOH HOH . 
J 3 HOH B 19 219 18 HOH HOH . 
J 3 HOH B 20 220 42 HOH HOH . 
J 3 HOH B 21 221 46 HOH HOH . 
J 3 HOH B 22 222 16 HOH HOH . 
J 3 HOH B 23 223 66 HOH HOH . 
J 3 HOH B 24 224 58 HOH HOH . 
J 3 HOH B 25 225 26 HOH HOH . 
J 3 HOH B 26 226 48 HOH HOH . 
K 3 HOH C 1 201 44 HOH HOH . 
K 3 HOH C 2 202 49 HOH HOH . 
K 3 HOH C 3 203 59 HOH HOH . 
K 3 HOH C 4 204 21 HOH HOH . 
K 3 HOH C 5 205 53 HOH HOH . 
K 3 HOH C 6 206 56 HOH HOH . 
K 3 HOH C 7 207 32 HOH HOH . 
K 3 HOH C 8 208 57 HOH HOH . 
K 3 HOH C 9 209 7 HOH HOH . 
K 3 HOH C 10 210 68 HOH HOH . 
K 3 HOH C 11 211 37 HOH HOH . 
K 3 HOH C 12 212 17 HOH HOH . 
K 3 HOH C 13 213 52 HOH HOH . 
K 3 HOH C 14 214 27 HOH HOH . 
K 3 HOH C 15 215 35 HOH HOH . 
K 3 HOH C 16 216 47 HOH HOH . 
K 3 HOH C 17 217 13 HOH HOH . 
K 3 HOH C 18 218 3 HOH HOH . 
K 3 HOH C 19 219 70 HOH HOH . 
K 3 HOH C 20 220 28 HOH HOH . 
K 3 HOH C 21 221 24 HOH HOH . 
K 3 HOH C 22 222 60 HOH HOH . 
K 3 HOH C 23 223 2 HOH HOH . 
K 3 HOH C 24 224 25 HOH HOH . 
K 3 HOH C 25 225 14 HOH HOH . 
K 3 HOH C 26 226 71 HOH HOH . 
K 3 HOH C 27 227 39 HOH HOH . 
K 3 HOH C 28 228 65 HOH HOH . 
K 3 HOH C 29 229 64 HOH HOH . 
K 3 HOH C 30 230 45 HOH HOH . 
K 3 HOH C 31 231 29 HOH HOH . 
K 3 HOH C 32 232 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 2 0.104 17.954 76.403 1 59.28 ? C1 GOL 101 C 1 
HETATM 2 O O1 GOL . . . G 2 1.246 18.773 76.539 1 63.48 ? O1 GOL 101 C 1 
HETATM 3 C C2 GOL . . . G 2 -0.934 18.217 77.472 1 63.13 ? C2 GOL 101 C 1 
HETATM 4 O O2 GOL . . . G 2 -0.404 18.925 78.573 1 62.35 ? O2 GOL 101 C 1 
HETATM 5 C C3 GOL . . . G 2 -2.124 18.952 76.867 1 64.59 ? C3 GOL 101 C 1 
HETATM 6 O O3 GOL . . . G 2 -3.338 18.643 77.54 1 62.18 ? O3 GOL 101 C 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#