data_5CMZ # _model_server_result.job_id fR7tP3n9l7I-5FPHobD0aA _model_server_result.datetime_utc '2025-01-10 12:01:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cmz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 5CMZ # _exptl.entry_id 5CMZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CMZ _cell.length_a 44.403 _cell.length_b 44.403 _cell.length_c 227.897 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CMZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I 1 1,2,4 C,D,J,K 2 1,3,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -22.2015 38.454126 0 3 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -44.403 0 0 4 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -44.403 0 0 5 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -22.2015 -38.454126 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 45 A GLN 45 1_555 A N NH2 46 A NH2 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.21 ? covale ? covale2 B C ACE 1 B ACE 40 1_555 B N MET 2 B MET 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C C GLN 45 C GLN 45 1_555 C N NH2 46 C NH2 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 D C ACE 1 D ACE 40 1_555 D N MET 2 D MET 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 76 n n C1 C2 EDO sing 77 n n C1 H11 EDO sing 78 n n C1 H12 EDO sing 79 n n O1 HO1 EDO sing 80 n n C2 O2 EDO sing 81 n n C2 H21 EDO sing 82 n n C2 H22 EDO sing 83 n n O2 HO2 EDO sing 84 n n # _atom_sites.entry_id 5CMZ _atom_sites.fract_transf_matrix[1][1] 0.022521 _atom_sites.fract_transf_matrix[1][2] 0.013003 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 201 61 SO4 SO4 . F 4 EDO A 1 202 62 EDO EDO . G 5 P4G A 1 203 63 P4G P4G . H 6 HOH A 1 301 26 HOH HOH . H 6 HOH A 2 302 28 HOH HOH . H 6 HOH A 3 303 16 HOH HOH . H 6 HOH A 4 304 19 HOH HOH . H 6 HOH A 5 305 24 HOH HOH . H 6 HOH A 6 306 20 HOH HOH . H 6 HOH A 7 307 3 HOH HOH . H 6 HOH A 8 308 32 HOH HOH . H 6 HOH A 9 309 1 HOH HOH . H 6 HOH A 10 310 18 HOH HOH . H 6 HOH A 11 311 11 HOH HOH . H 6 HOH A 12 312 2 HOH HOH . H 6 HOH A 13 313 17 HOH HOH . H 6 HOH A 14 314 33 HOH HOH . H 6 HOH A 15 315 8 HOH HOH . H 6 HOH A 16 316 34 HOH HOH . H 6 HOH A 17 317 37 HOH HOH . H 6 HOH A 18 318 14 HOH HOH . H 6 HOH A 19 319 22 HOH HOH . I 6 HOH B 1 101 23 HOH HOH . I 6 HOH B 2 102 21 HOH HOH . J 6 HOH C 1 201 12 HOH HOH . J 6 HOH C 2 202 35 HOH HOH . J 6 HOH C 3 203 29 HOH HOH . J 6 HOH C 4 204 7 HOH HOH . J 6 HOH C 5 205 31 HOH HOH . J 6 HOH C 6 206 6 HOH HOH . J 6 HOH C 7 207 4 HOH HOH . J 6 HOH C 8 208 5 HOH HOH . J 6 HOH C 9 209 13 HOH HOH . J 6 HOH C 10 210 36 HOH HOH . J 6 HOH C 11 211 10 HOH HOH . J 6 HOH C 12 212 9 HOH HOH . J 6 HOH C 13 213 15 HOH HOH . J 6 HOH C 14 214 30 HOH HOH . J 6 HOH C 15 215 27 HOH HOH . K 6 HOH D 1 101 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -20.752 2.251 3.468 1 50.93 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . F 4 -21.733 2.037 4.489 1 57.16 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . F 4 -21.44 2.298 2.11 1 53.62 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . F 4 -20.492 2.669 1.105 1 52.54 ? O2 EDO 202 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 742 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #