data_5CN4 # _model_server_result.job_id xWFSFOp_9S4ueXCrzka5-g _model_server_result.datetime_utc '2024-11-24 16:51:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cn4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5CN4 # _exptl.entry_id 5CN4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.5 _cell.angle_gamma 90 _cell.entry_id 5CN4 _cell.length_a 63.6 _cell.length_b 28.8 _cell.length_c 35.6 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CN4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.228 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 117 n n CHA C4D HEM doub 118 n n CHA HHA HEM sing 119 n n CHB C4A HEM sing 120 n n CHB C1B HEM doub 121 n n CHB HHB HEM sing 122 n n CHC C4B HEM sing 123 n n CHC C1C HEM doub 124 n n CHC HHC HEM sing 125 n n CHD C4C HEM doub 126 n n CHD C1D HEM sing 127 n n CHD HHD HEM sing 128 n n C1A C2A HEM doub 129 n y C1A NA HEM sing 130 n y C2A C3A HEM sing 131 n y C2A CAA HEM sing 132 n n C3A C4A HEM doub 133 n y C3A CMA HEM sing 134 n n C4A NA HEM sing 135 n y CMA HMA HEM sing 136 n n CMA HMAA HEM sing 137 n n CMA HMAB HEM sing 138 n n CAA CBA HEM sing 139 n n CAA HAA HEM sing 140 n n CAA HAAA HEM sing 141 n n CBA CGA HEM sing 142 n n CBA HBA HEM sing 143 n n CBA HBAA HEM sing 144 n n CGA O1A HEM doub 145 n n CGA O2A HEM sing 146 n n C1B C2B HEM sing 147 n n C1B NB HEM sing 148 n n C2B C3B HEM doub 149 n n C2B CMB HEM sing 150 n n C3B C4B HEM sing 151 n n C3B CAB HEM sing 152 n n C4B NB HEM doub 153 n n CMB HMB HEM sing 154 n n CMB HMBA HEM sing 155 n n CMB HMBB HEM sing 156 n n CAB CBB HEM doub 157 n n CAB HAB HEM sing 158 n n CBB HBB HEM sing 159 n n CBB HBBA HEM sing 160 n n C1C C2C HEM sing 161 n y C1C NC HEM sing 162 n y C2C C3C HEM doub 163 n y C2C CMC HEM sing 164 n n C3C C4C HEM sing 165 n y C3C CAC HEM sing 166 n n C4C NC HEM sing 167 n y CMC HMC HEM sing 168 n n CMC HMCA HEM sing 169 n n CMC HMCB HEM sing 170 n n CAC CBC HEM doub 171 n n CAC HAC HEM sing 172 n n CBC HBC HEM sing 173 n n CBC HBCA HEM sing 174 n n C1D C2D HEM sing 175 n n C1D ND HEM doub 176 n n C2D C3D HEM doub 177 n n C2D CMD HEM sing 178 n n C3D C4D HEM sing 179 n n C3D CAD HEM sing 180 n n C4D ND HEM sing 181 n n CMD HMD HEM sing 182 n n CMD HMDA HEM sing 183 n n CMD HMDB HEM sing 184 n n CAD CBD HEM sing 185 n n CAD HAD HEM sing 186 n n CAD HADA HEM sing 187 n n CBD CGD HEM sing 188 n n CBD HBD HEM sing 189 n n CBD HBDA HEM sing 190 n n CGD O1D HEM doub 191 n n CGD O2D HEM sing 192 n n O2A H2A HEM sing 193 n n O2D H2D HEM sing 194 n n FE NA HEM sing 195 n n FE NB HEM sing 196 n n FE NC HEM sing 197 n n FE ND HEM sing 198 n n # _atom_sites.entry_id 5CN4 _atom_sites.fract_transf_matrix[1][1] 0.015723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004657 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 154 HEM HEM . C 3 SO4 A 1 202 156 SO4 SO4 . D 3 SO4 A 1 203 900 SO4 SO4 . E 4 CMO A 1 204 155 CMO CMO . F 5 HOH A 1 301 25 HOH HOH . F 5 HOH A 2 302 58 HOH HOH . F 5 HOH A 3 303 43 HOH HOH . F 5 HOH A 4 304 70 HOH HOH . F 5 HOH A 5 305 62 HOH HOH . F 5 HOH A 6 306 69 HOH HOH . F 5 HOH A 7 307 31 HOH HOH . F 5 HOH A 8 308 37 HOH HOH . F 5 HOH A 9 309 54 HOH HOH . F 5 HOH A 10 310 21 HOH HOH . F 5 HOH A 11 311 51 HOH HOH . F 5 HOH A 12 312 20 HOH HOH . F 5 HOH A 13 313 16 HOH HOH . F 5 HOH A 14 314 32 HOH HOH . F 5 HOH A 15 315 48 HOH HOH . F 5 HOH A 16 316 39 HOH HOH . F 5 HOH A 17 317 64 HOH HOH . F 5 HOH A 18 318 40 HOH HOH . F 5 HOH A 19 319 14 HOH HOH . F 5 HOH A 20 320 57 HOH HOH . F 5 HOH A 21 321 65 HOH HOH . F 5 HOH A 22 322 45 HOH HOH . F 5 HOH A 23 323 11 HOH HOH . F 5 HOH A 24 324 15 HOH HOH . F 5 HOH A 25 325 17 HOH HOH . F 5 HOH A 26 326 7 HOH HOH . F 5 HOH A 27 327 12 HOH HOH . F 5 HOH A 28 328 3 HOH HOH . F 5 HOH A 29 329 35 HOH HOH . F 5 HOH A 30 330 27 HOH HOH . F 5 HOH A 31 331 24 HOH HOH . F 5 HOH A 32 332 41 HOH HOH . F 5 HOH A 33 333 1 HOH HOH . F 5 HOH A 34 334 19 HOH HOH . F 5 HOH A 35 335 38 HOH HOH . F 5 HOH A 36 336 29 HOH HOH . F 5 HOH A 37 337 9 HOH HOH . F 5 HOH A 38 338 33 HOH HOH . F 5 HOH A 39 339 5 HOH HOH . F 5 HOH A 40 340 56 HOH HOH . F 5 HOH A 41 341 18 HOH HOH . F 5 HOH A 42 342 28 HOH HOH . F 5 HOH A 43 343 72 HOH HOH . F 5 HOH A 44 344 4 HOH HOH . F 5 HOH A 45 345 59 HOH HOH . F 5 HOH A 46 346 6 HOH HOH . F 5 HOH A 47 347 26 HOH HOH . F 5 HOH A 48 348 44 HOH HOH . F 5 HOH A 49 349 68 HOH HOH . F 5 HOH A 50 350 42 HOH HOH . F 5 HOH A 51 351 34 HOH HOH . F 5 HOH A 52 352 36 HOH HOH . F 5 HOH A 53 353 53 HOH HOH . F 5 HOH A 54 354 8 HOH HOH . F 5 HOH A 55 355 10 HOH HOH . F 5 HOH A 56 356 66 HOH HOH . F 5 HOH A 57 357 13 HOH HOH . F 5 HOH A 58 358 22 HOH HOH . F 5 HOH A 59 359 50 HOH HOH . F 5 HOH A 60 360 63 HOH HOH . F 5 HOH A 61 361 2 HOH HOH . F 5 HOH A 62 362 49 HOH HOH . F 5 HOH A 63 363 71 HOH HOH . F 5 HOH A 64 364 30 HOH HOH . F 5 HOH A 65 365 47 HOH HOH . F 5 HOH A 66 366 61 HOH HOH . F 5 HOH A 67 367 23 HOH HOH . F 5 HOH A 68 368 55 HOH HOH . F 5 HOH A 69 369 67 HOH HOH . F 5 HOH A 70 370 52 HOH HOH . F 5 HOH A 71 371 60 HOH HOH . F 5 HOH A 72 372 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 10.799 -32.088 13.076 1 24.48 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 10.817 -28.996 16.801 1 20.06 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 13.073 -25.676 14.074 1 20.19 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 13.076 -28.734 10.334 1 19.73 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 10.614 -31.538 14.324 1 24.23 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 9.967 -32.201 15.429 1 21.6 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 9.959 -31.355 16.471 1 21.26 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 10.608 -30.121 16.045 1 20.49 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 9.374 -31.599 17.888 1 25.55 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 9.414 -33.637 15.333 1 23.83 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 10.311 -34.587 16.126 1 22.56 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 11.738 -34.62 15.608 1 26.55 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 11.958 -35.019 14.438 1 26.5 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 12.68 -34.279 16.368 1 27.72 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 11.403 -27.825 16.382 1 22.12 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 11.509 -26.609 17.157 1 22.56 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 12.144 -25.692 16.403 1 20.37 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 12.44 -26.301 15.123 1 23.17 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 10.986 -26.456 18.606 1 22.99 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 12.504 -24.221 16.704 1 23.65 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 11.881 -23.471 17.611 1 25.19 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 13.239 -26.19 12.81 1 17 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 13.733 -25.481 11.641 1 19.99 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 13.742 -26.337 10.607 1 17.55 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 13.218 -27.599 11.086 1 20.44 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 14.182 -24.004 11.681 1 23.22 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 14.146 -26.147 9.122 1 23.39 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 14.278 -24.949 8.553 1 27.75 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 12.446 -29.898 10.709 1 22.59 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 12.157 -30.997 9.815 1 25.02 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 11.461 -32.046 10.673 1 23.48 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 11.37 -31.469 11.992 1 25.53 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 12.52 -31.1 8.324 1 24.8 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 10.912 -33.413 10.227 1 24.58 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 9.622 -33.086 9.493 1 25.89 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 8.916 -34.345 9.057 1 33.05 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 7.984 -34.783 9.774 1 38.89 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 9.284 -34.893 7.993 1 37.89 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 10.998 -30.277 14.735 1 21.86 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 11.972 -27.6 15.146 1 19.25 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 12.942 -27.479 12.434 1 19.91 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 11.961 -30.208 11.974 1 21.62 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 12.046 -28.955 13.606 1 25.67 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #