data_5CN6 # _model_server_result.job_id Puduo2Xd3-XpNzChb7R6OA _model_server_result.datetime_utc '2024-11-28 09:03:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cn6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5CN6 # _exptl.entry_id 5CN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.5 _cell.angle_gamma 90 _cell.entry_id 5CN6 _cell.length_a 63.6 _cell.length_b 28.8 _cell.length_c 35.6 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.229 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 117 n n CHA C4D HEM doub 118 n n CHA HHA HEM sing 119 n n CHB C4A HEM sing 120 n n CHB C1B HEM doub 121 n n CHB HHB HEM sing 122 n n CHC C4B HEM sing 123 n n CHC C1C HEM doub 124 n n CHC HHC HEM sing 125 n n CHD C4C HEM doub 126 n n CHD C1D HEM sing 127 n n CHD HHD HEM sing 128 n n C1A C2A HEM doub 129 n y C1A NA HEM sing 130 n y C2A C3A HEM sing 131 n y C2A CAA HEM sing 132 n n C3A C4A HEM doub 133 n y C3A CMA HEM sing 134 n n C4A NA HEM sing 135 n y CMA HMA HEM sing 136 n n CMA HMAA HEM sing 137 n n CMA HMAB HEM sing 138 n n CAA CBA HEM sing 139 n n CAA HAA HEM sing 140 n n CAA HAAA HEM sing 141 n n CBA CGA HEM sing 142 n n CBA HBA HEM sing 143 n n CBA HBAA HEM sing 144 n n CGA O1A HEM doub 145 n n CGA O2A HEM sing 146 n n C1B C2B HEM sing 147 n n C1B NB HEM sing 148 n n C2B C3B HEM doub 149 n n C2B CMB HEM sing 150 n n C3B C4B HEM sing 151 n n C3B CAB HEM sing 152 n n C4B NB HEM doub 153 n n CMB HMB HEM sing 154 n n CMB HMBA HEM sing 155 n n CMB HMBB HEM sing 156 n n CAB CBB HEM doub 157 n n CAB HAB HEM sing 158 n n CBB HBB HEM sing 159 n n CBB HBBA HEM sing 160 n n C1C C2C HEM sing 161 n y C1C NC HEM sing 162 n y C2C C3C HEM doub 163 n y C2C CMC HEM sing 164 n n C3C C4C HEM sing 165 n y C3C CAC HEM sing 166 n n C4C NC HEM sing 167 n y CMC HMC HEM sing 168 n n CMC HMCA HEM sing 169 n n CMC HMCB HEM sing 170 n n CAC CBC HEM doub 171 n n CAC HAC HEM sing 172 n n CBC HBC HEM sing 173 n n CBC HBCA HEM sing 174 n n C1D C2D HEM sing 175 n n C1D ND HEM doub 176 n n C2D C3D HEM doub 177 n n C2D CMD HEM sing 178 n n C3D C4D HEM sing 179 n n C3D CAD HEM sing 180 n n C4D ND HEM sing 181 n n CMD HMD HEM sing 182 n n CMD HMDA HEM sing 183 n n CMD HMDB HEM sing 184 n n CAD CBD HEM sing 185 n n CAD HAD HEM sing 186 n n CAD HADA HEM sing 187 n n CBD CGD HEM sing 188 n n CBD HBD HEM sing 189 n n CBD HBDA HEM sing 190 n n CGD O1D HEM doub 191 n n CGD O2D HEM sing 192 n n O2A H2A HEM sing 193 n n O2D H2D HEM sing 194 n n FE NA HEM sing 195 n n FE NB HEM sing 196 n n FE NC HEM sing 197 n n FE ND HEM sing 198 n n # _atom_sites.entry_id 5CN6 _atom_sites.fract_transf_matrix[1][1] 0.015723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004657 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 154 HEM HEM . C 3 SO4 A 1 202 156 SO4 SO4 . D 3 SO4 A 1 203 900 SO4 SO4 . E 4 CMO A 1 204 155 CMO CMO . F 5 HOH A 1 301 63 HOH HOH . F 5 HOH A 2 302 26 HOH HOH . F 5 HOH A 3 303 65 HOH HOH . F 5 HOH A 4 304 51 HOH HOH . F 5 HOH A 5 305 72 HOH HOH . F 5 HOH A 6 306 21 HOH HOH . F 5 HOH A 7 307 16 HOH HOH . F 5 HOH A 8 308 14 HOH HOH . F 5 HOH A 9 309 37 HOH HOH . F 5 HOH A 10 310 46 HOH HOH . F 5 HOH A 11 311 69 HOH HOH . F 5 HOH A 12 312 74 HOH HOH . F 5 HOH A 13 313 42 HOH HOH . F 5 HOH A 14 314 33 HOH HOH . F 5 HOH A 15 315 48 HOH HOH . F 5 HOH A 16 316 55 HOH HOH . F 5 HOH A 17 317 25 HOH HOH . F 5 HOH A 18 318 29 HOH HOH . F 5 HOH A 19 319 77 HOH HOH . F 5 HOH A 20 320 7 HOH HOH . F 5 HOH A 21 321 71 HOH HOH . F 5 HOH A 22 322 31 HOH HOH . F 5 HOH A 23 323 11 HOH HOH . F 5 HOH A 24 324 78 HOH HOH . F 5 HOH A 25 325 1 HOH HOH . F 5 HOH A 26 326 54 HOH HOH . F 5 HOH A 27 327 12 HOH HOH . F 5 HOH A 28 328 57 HOH HOH . F 5 HOH A 29 329 75 HOH HOH . F 5 HOH A 30 330 19 HOH HOH . F 5 HOH A 31 331 15 HOH HOH . F 5 HOH A 32 332 68 HOH HOH . F 5 HOH A 33 333 40 HOH HOH . F 5 HOH A 34 334 30 HOH HOH . F 5 HOH A 35 335 5 HOH HOH . F 5 HOH A 36 336 44 HOH HOH . F 5 HOH A 37 337 6 HOH HOH . F 5 HOH A 38 338 41 HOH HOH . F 5 HOH A 39 339 52 HOH HOH . F 5 HOH A 40 340 9 HOH HOH . F 5 HOH A 41 341 62 HOH HOH . F 5 HOH A 42 342 18 HOH HOH . F 5 HOH A 43 343 43 HOH HOH . F 5 HOH A 44 344 10 HOH HOH . F 5 HOH A 45 345 17 HOH HOH . F 5 HOH A 46 346 3 HOH HOH . F 5 HOH A 47 347 70 HOH HOH . F 5 HOH A 48 348 28 HOH HOH . F 5 HOH A 49 349 24 HOH HOH . F 5 HOH A 50 350 58 HOH HOH . F 5 HOH A 51 351 64 HOH HOH . F 5 HOH A 52 352 4 HOH HOH . F 5 HOH A 53 353 76 HOH HOH . F 5 HOH A 54 354 35 HOH HOH . F 5 HOH A 55 355 32 HOH HOH . F 5 HOH A 56 356 34 HOH HOH . F 5 HOH A 57 357 67 HOH HOH . F 5 HOH A 58 358 39 HOH HOH . F 5 HOH A 59 359 36 HOH HOH . F 5 HOH A 60 360 20 HOH HOH . F 5 HOH A 61 361 60 HOH HOH . F 5 HOH A 62 362 49 HOH HOH . F 5 HOH A 63 363 27 HOH HOH . F 5 HOH A 64 364 2 HOH HOH . F 5 HOH A 65 365 8 HOH HOH . F 5 HOH A 66 366 59 HOH HOH . F 5 HOH A 67 367 13 HOH HOH . F 5 HOH A 68 368 38 HOH HOH . F 5 HOH A 69 369 22 HOH HOH . F 5 HOH A 70 370 66 HOH HOH . F 5 HOH A 71 371 23 HOH HOH . F 5 HOH A 72 372 56 HOH HOH . F 5 HOH A 73 373 53 HOH HOH . F 5 HOH A 74 374 47 HOH HOH . F 5 HOH A 75 375 50 HOH HOH . F 5 HOH A 76 376 45 HOH HOH . F 5 HOH A 77 377 73 HOH HOH . F 5 HOH A 78 378 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . A . B 2 10.765 -32.079 13.068 1 24.76 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . A . B 2 10.832 -29.009 16.817 1 23.11 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . A . B 2 13.049 -25.666 14.082 1 20.79 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . A . B 2 13.079 -28.727 10.355 1 20.85 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . A . B 2 10.592 -31.537 14.316 1 24.56 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . A . B 2 9.951 -32.208 15.42 1 20.91 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . A . B 2 9.961 -31.361 16.463 1 22.26 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . A . B 2 10.611 -30.128 16.044 1 20.61 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . A . B 2 9.389 -31.608 17.88 1 25.24 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . A . B 2 9.39 -33.643 15.333 1 22.19 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . A . B 2 10.297 -34.621 16.094 1 23.03 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . A . B 2 11.724 -34.587 15.571 1 25.73 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . A . B 2 11.941 -34.93 14.386 1 26.49 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . A . B 2 12.659 -34.232 16.327 1 25.9 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . A . B 2 11.418 -27.832 16.403 1 21.68 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . A . B 2 11.542 -26.623 17.183 1 22.7 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . A . B 2 12.167 -25.7 16.429 1 21.21 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . A . B 2 12.437 -26.297 15.14 1 24.04 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . A . B 2 11.051 -26.483 18.644 1 21.52 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . A . B 2 12.542 -24.233 16.75 1 25.25 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . A . B 2 11.951 -23.493 17.693 1 23.91 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . A . B 2 13.218 -26.184 12.821 1 19.14 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . A . B 2 13.71 -25.47 11.656 1 20.02 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . A . B 2 13.725 -26.322 10.619 1 18.25 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . A . B 2 13.213 -27.591 11.099 1 18.82 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . A . B 2 14.138 -23.986 11.702 1 25.02 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . A . B 2 14.137 -26.104 9.141 1 25.73 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . A . B 2 14.279 -24.895 8.595 1 26.78 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . A . B 2 12.445 -29.886 10.731 1 20.1 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . A . B 2 12.172 -30.983 9.835 1 23.72 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . A . B 2 11.459 -32.03 10.683 1 22.55 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . A . B 2 11.352 -31.453 11.997 1 24.41 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . A . B 2 12.553 -31.082 8.354 1 25.28 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . A . B 2 10.917 -33.401 10.245 1 23.88 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . A . B 2 9.603 -33.094 9.543 1 25.35 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . A . B 2 8.943 -34.373 9.104 1 33.36 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . A . B 2 8.049 -34.857 9.837 1 38.46 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . A . B 2 9.316 -34.896 8.027 1 36.82 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . A . B 2 10.983 -30.28 14.729 1 20.96 ? NA HEM 201 A 1 HETATM 40 N NB HEM . A . B 2 11.963 -27.593 15.159 1 21.61 ? NB HEM 201 A 1 HETATM 41 N NC HEM . A . B 2 12.935 -27.474 12.439 1 19.61 ? NC HEM 201 A 1 HETATM 42 N ND HEM . A . B 2 11.941 -30.195 11.989 1 20.81 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . A . B 2 12.053 -28.943 13.61 1 25.76 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 43 #