data_5CN8 # _model_server_result.job_id jNVg-lWLtrRItK4wq3kR0Q _model_server_result.datetime_utc '2024-11-28 09:49:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cn8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5CN8 # _exptl.entry_id 5CN8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.5 _cell.angle_gamma 90 _cell.entry_id 5CN8 _cell.length_a 63.6 _cell.length_b 28.8 _cell.length_c 35.6 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.237 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 117 n n CHA C4D HEM doub 118 n n CHA HHA HEM sing 119 n n CHB C4A HEM sing 120 n n CHB C1B HEM doub 121 n n CHB HHB HEM sing 122 n n CHC C4B HEM sing 123 n n CHC C1C HEM doub 124 n n CHC HHC HEM sing 125 n n CHD C4C HEM doub 126 n n CHD C1D HEM sing 127 n n CHD HHD HEM sing 128 n n C1A C2A HEM doub 129 n y C1A NA HEM sing 130 n y C2A C3A HEM sing 131 n y C2A CAA HEM sing 132 n n C3A C4A HEM doub 133 n y C3A CMA HEM sing 134 n n C4A NA HEM sing 135 n y CMA HMA HEM sing 136 n n CMA HMAA HEM sing 137 n n CMA HMAB HEM sing 138 n n CAA CBA HEM sing 139 n n CAA HAA HEM sing 140 n n CAA HAAA HEM sing 141 n n CBA CGA HEM sing 142 n n CBA HBA HEM sing 143 n n CBA HBAA HEM sing 144 n n CGA O1A HEM doub 145 n n CGA O2A HEM sing 146 n n C1B C2B HEM sing 147 n n C1B NB HEM sing 148 n n C2B C3B HEM doub 149 n n C2B CMB HEM sing 150 n n C3B C4B HEM sing 151 n n C3B CAB HEM sing 152 n n C4B NB HEM doub 153 n n CMB HMB HEM sing 154 n n CMB HMBA HEM sing 155 n n CMB HMBB HEM sing 156 n n CAB CBB HEM doub 157 n n CAB HAB HEM sing 158 n n CBB HBB HEM sing 159 n n CBB HBBA HEM sing 160 n n C1C C2C HEM sing 161 n y C1C NC HEM sing 162 n y C2C C3C HEM doub 163 n y C2C CMC HEM sing 164 n n C3C C4C HEM sing 165 n y C3C CAC HEM sing 166 n n C4C NC HEM sing 167 n y CMC HMC HEM sing 168 n n CMC HMCA HEM sing 169 n n CMC HMCB HEM sing 170 n n CAC CBC HEM doub 171 n n CAC HAC HEM sing 172 n n CBC HBC HEM sing 173 n n CBC HBCA HEM sing 174 n n C1D C2D HEM sing 175 n n C1D ND HEM doub 176 n n C2D C3D HEM doub 177 n n C2D CMD HEM sing 178 n n C3D C4D HEM sing 179 n n C3D CAD HEM sing 180 n n C4D ND HEM sing 181 n n CMD HMD HEM sing 182 n n CMD HMDA HEM sing 183 n n CMD HMDB HEM sing 184 n n CAD CBD HEM sing 185 n n CAD HAD HEM sing 186 n n CAD HADA HEM sing 187 n n CBD CGD HEM sing 188 n n CBD HBD HEM sing 189 n n CBD HBDA HEM sing 190 n n CGD O1D HEM doub 191 n n CGD O2D HEM sing 192 n n O2A H2A HEM sing 193 n n O2D H2D HEM sing 194 n n FE NA HEM sing 195 n n FE NB HEM sing 196 n n FE NC HEM sing 197 n n FE ND HEM sing 198 n n # _atom_sites.entry_id 5CN8 _atom_sites.fract_transf_matrix[1][1] 0.015723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004657 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 154 HEM HEM . C 3 SO4 A 1 202 156 SO4 SO4 . D 3 SO4 A 1 203 900 SO4 SO4 . E 4 CMO A 1 204 155 CMO CMO . F 5 HOH A 1 301 26 HOH HOH . F 5 HOH A 2 302 16 HOH HOH . F 5 HOH A 3 303 63 HOH HOH . F 5 HOH A 4 304 37 HOH HOH . F 5 HOH A 5 305 21 HOH HOH . F 5 HOH A 6 306 61 HOH HOH . F 5 HOH A 7 307 46 HOH HOH . F 5 HOH A 8 308 36 HOH HOH . F 5 HOH A 9 309 6 HOH HOH . F 5 HOH A 10 310 66 HOH HOH . F 5 HOH A 11 311 47 HOH HOH . F 5 HOH A 12 312 32 HOH HOH . F 5 HOH A 13 313 14 HOH HOH . F 5 HOH A 14 314 7 HOH HOH . F 5 HOH A 15 315 56 HOH HOH . F 5 HOH A 16 316 39 HOH HOH . F 5 HOH A 17 317 40 HOH HOH . F 5 HOH A 18 318 27 HOH HOH . F 5 HOH A 19 319 31 HOH HOH . F 5 HOH A 20 320 70 HOH HOH . F 5 HOH A 21 321 11 HOH HOH . F 5 HOH A 22 322 60 HOH HOH . F 5 HOH A 23 323 43 HOH HOH . F 5 HOH A 24 324 28 HOH HOH . F 5 HOH A 25 325 41 HOH HOH . F 5 HOH A 26 326 19 HOH HOH . F 5 HOH A 27 327 4 HOH HOH . F 5 HOH A 28 328 1 HOH HOH . F 5 HOH A 29 329 25 HOH HOH . F 5 HOH A 30 330 48 HOH HOH . F 5 HOH A 31 331 5 HOH HOH . F 5 HOH A 32 332 68 HOH HOH . F 5 HOH A 33 333 3 HOH HOH . F 5 HOH A 34 334 12 HOH HOH . F 5 HOH A 35 335 15 HOH HOH . F 5 HOH A 36 336 73 HOH HOH . F 5 HOH A 37 337 30 HOH HOH . F 5 HOH A 38 338 45 HOH HOH . F 5 HOH A 39 339 67 HOH HOH . F 5 HOH A 40 340 71 HOH HOH . F 5 HOH A 41 341 51 HOH HOH . F 5 HOH A 42 342 54 HOH HOH . F 5 HOH A 43 343 38 HOH HOH . F 5 HOH A 44 344 17 HOH HOH . F 5 HOH A 45 345 76 HOH HOH . F 5 HOH A 46 346 20 HOH HOH . F 5 HOH A 47 347 81 HOH HOH . F 5 HOH A 48 348 74 HOH HOH . F 5 HOH A 49 349 57 HOH HOH . F 5 HOH A 50 350 24 HOH HOH . F 5 HOH A 51 351 55 HOH HOH . F 5 HOH A 52 352 42 HOH HOH . F 5 HOH A 53 353 77 HOH HOH . F 5 HOH A 54 354 10 HOH HOH . F 5 HOH A 55 355 59 HOH HOH . F 5 HOH A 56 356 33 HOH HOH . F 5 HOH A 57 357 52 HOH HOH . F 5 HOH A 58 358 62 HOH HOH . F 5 HOH A 59 359 65 HOH HOH . F 5 HOH A 60 360 9 HOH HOH . F 5 HOH A 61 361 29 HOH HOH . F 5 HOH A 62 362 18 HOH HOH . F 5 HOH A 63 363 50 HOH HOH . F 5 HOH A 64 364 2 HOH HOH . F 5 HOH A 65 365 44 HOH HOH . F 5 HOH A 66 366 22 HOH HOH . F 5 HOH A 67 367 35 HOH HOH . F 5 HOH A 68 368 64 HOH HOH . F 5 HOH A 69 369 13 HOH HOH . F 5 HOH A 70 370 53 HOH HOH . F 5 HOH A 71 371 75 HOH HOH . F 5 HOH A 72 372 72 HOH HOH . F 5 HOH A 73 373 34 HOH HOH . F 5 HOH A 74 374 80 HOH HOH . F 5 HOH A 75 375 82 HOH HOH . F 5 HOH A 76 376 8 HOH HOH . F 5 HOH A 77 377 58 HOH HOH . F 5 HOH A 78 378 23 HOH HOH . F 5 HOH A 79 379 78 HOH HOH . F 5 HOH A 80 380 69 HOH HOH . F 5 HOH A 81 381 49 HOH HOH . F 5 HOH A 82 382 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . A . B 2 10.75 -32.079 13.077 1 23.64 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . A . B 2 10.821 -29.028 16.841 1 22.95 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . A . B 2 13.021 -25.698 14.069 1 21.2 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . A . B 2 13.076 -28.757 10.334 1 21.97 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . A . B 2 10.578 -31.549 14.333 1 23.51 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . A . B 2 9.959 -32.228 15.446 1 20.57 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . A . B 2 9.974 -31.386 16.503 1 22.76 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 10.605 -30.149 16.072 1 20.67 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 9.427 -31.622 17.935 1 23.35 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 9.42 -33.669 15.357 1 22.46 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 10.352 -34.617 16.129 1 23.53 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 11.771 -34.592 15.581 1 25.68 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 11.963 -34.86 14.372 1 25.42 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 12.727 -34.319 16.346 1 26.37 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 11.405 -27.852 16.421 1 22.52 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 11.547 -26.647 17.205 1 21.25 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 12.17 -25.731 16.44 1 20.77 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 12.413 -26.322 15.14 1 23.27 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 11.086 -26.516 18.68 1 21.48 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 12.553 -24.267 16.761 1 24.21 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 11.865 -23.501 17.613 1 26.8 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 13.196 -26.218 12.803 1 19.81 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 13.693 -25.499 11.638 1 19.42 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 13.712 -26.352 10.595 1 18.36 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 13.202 -27.621 11.077 1 18.99 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 14.113 -24.014 11.69 1 24.25 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 14.125 -26.149 9.113 1 25.79 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 14.283 -24.948 8.555 1 26.96 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 12.429 -29.902 10.721 1 20.21 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 12.152 -30.998 9.829 1 23.99 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 11.436 -32.029 10.68 1 22.08 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 11.339 -31.456 12.002 1 24.71 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 12.513 -31.097 8.341 1 24.11 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 10.884 -33.39 10.23 1 22.26 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 9.562 -33.073 9.56 1 25.99 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 8.894 -34.367 9.179 1 33.34 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 8.06 -34.863 9.973 1 37.62 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 9.209 -34.899 8.088 1 37 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 10.96 -30.293 14.754 1 20.21 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 11.944 -27.616 15.175 1 21.39 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 12.914 -27.51 12.415 1 20.26 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 11.941 -30.204 11.988 1 20.34 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 12.047 -28.962 13.624 1 26.15 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #