data_5CNJ
#
_model_server_result.job_id            KLaEqknoP6ohzLhTx9O7yA 
_model_server_result.datetime_utc      '2024-11-22 18:22:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cnj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    5CNJ 
#
_exptl.entry_id    5CNJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CNJ 
_cell.length_a            80.391 
_cell.length_b            155.087 
_cell.length_c            92.714 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CNJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 52 A CYS 50 1_555 A SG CYS 94 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 A SG CYS 357 A CYS 355 1_555 A SG CYS 364 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 A SG CYS 402 A CYS 400 1_555 A SG CYS 409 A CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 B SG CYS 52 B CYS 50 1_555 B SG CYS 94 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 357 B CYS 355 1_555 B SG CYS 364 B CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf6 B SG CYS 402 B CYS 400 1_555 B SG CYS 409 B CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 A ND2 ASN 205 A ASN 203 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 270 n n 
C1 O1 NAG sing 271 n n 
C1 O5 NAG sing 272 n n 
C1 H1 NAG sing 273 n n 
C2 C3 NAG sing 274 n n 
C2 N2 NAG sing 275 n n 
C2 H2 NAG sing 276 n n 
C3 C4 NAG sing 277 n n 
C3 O3 NAG sing 278 n n 
C3 H3 NAG sing 279 n n 
C4 C5 NAG sing 280 n n 
C4 O4 NAG sing 281 n n 
C4 H4 NAG sing 282 n n 
C5 C6 NAG sing 283 n n 
C5 O5 NAG sing 284 n n 
C5 H5 NAG sing 285 n n 
C6 O6 NAG sing 286 n n 
C6 H61 NAG sing 287 n n 
C6 H62 NAG sing 288 n n 
C7 C8 NAG sing 289 n n 
C7 N2 NAG sing 290 n n 
C7 O7 NAG doub 291 n n 
C8 H81 NAG sing 292 n n 
C8 H82 NAG sing 293 n n 
C8 H83 NAG sing 294 n n 
N2 HN2 NAG sing 295 n n 
O1 HO1 NAG sing 296 n n 
O3 HO3 NAG sing 297 n n 
O4 HO4 NAG sing 298 n n 
O6 HO6 NAG sing 299 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5CNJ 
_atom_sites.fract_transf_matrix[1][1]    0.012439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006448 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010786 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 601 500 NAG NAG . 
D 3 52Q A 1 602 1 52Q SX1 . 
E 3 52Q B 1 601 2 52Q SX1 . 
F 4 HOH A 1 701 99 HOH HOH . 
F 4 HOH A 2 702 18 HOH HOH . 
F 4 HOH A 3 703 165 HOH HOH . 
F 4 HOH A 4 704 185 HOH HOH . 
F 4 HOH A 5 705 195 HOH HOH . 
F 4 HOH A 6 706 183 HOH HOH . 
F 4 HOH A 7 707 109 HOH HOH . 
F 4 HOH A 8 708 179 HOH HOH . 
F 4 HOH A 9 709 104 HOH HOH . 
F 4 HOH A 10 710 91 HOH HOH . 
F 4 HOH A 11 711 24 HOH HOH . 
F 4 HOH A 12 712 166 HOH HOH . 
F 4 HOH A 13 713 98 HOH HOH . 
F 4 HOH A 14 714 8 HOH HOH . 
F 4 HOH A 15 715 105 HOH HOH . 
F 4 HOH A 16 716 225 HOH HOH . 
F 4 HOH A 17 717 9 HOH HOH . 
F 4 HOH A 18 718 15 HOH HOH . 
F 4 HOH A 19 719 126 HOH HOH . 
F 4 HOH A 20 720 88 HOH HOH . 
F 4 HOH A 21 721 150 HOH HOH . 
F 4 HOH A 22 722 146 HOH HOH . 
F 4 HOH A 23 723 108 HOH HOH . 
F 4 HOH A 24 724 44 HOH HOH . 
F 4 HOH A 25 725 173 HOH HOH . 
F 4 HOH A 26 726 103 HOH HOH . 
F 4 HOH A 27 727 194 HOH HOH . 
F 4 HOH A 28 728 209 HOH HOH . 
F 4 HOH A 29 729 191 HOH HOH . 
F 4 HOH A 30 730 170 HOH HOH . 
F 4 HOH A 31 731 50 HOH HOH . 
F 4 HOH A 32 732 181 HOH HOH . 
F 4 HOH A 33 733 226 HOH HOH . 
F 4 HOH A 34 734 101 HOH HOH . 
F 4 HOH A 35 735 172 HOH HOH . 
F 4 HOH A 36 736 62 HOH HOH . 
F 4 HOH A 37 737 162 HOH HOH . 
F 4 HOH A 38 738 241 HOH HOH . 
F 4 HOH A 39 739 143 HOH HOH . 
F 4 HOH A 40 740 48 HOH HOH . 
F 4 HOH A 41 741 107 HOH HOH . 
F 4 HOH A 42 742 75 HOH HOH . 
F 4 HOH A 43 743 106 HOH HOH . 
F 4 HOH A 44 744 184 HOH HOH . 
F 4 HOH A 45 745 66 HOH HOH . 
F 4 HOH A 46 746 112 HOH HOH . 
F 4 HOH A 47 747 1 HOH HOH . 
F 4 HOH A 48 748 110 HOH HOH . 
F 4 HOH A 49 749 3 HOH HOH . 
F 4 HOH A 50 750 2 HOH HOH . 
F 4 HOH A 51 751 164 HOH HOH . 
F 4 HOH A 52 752 36 HOH HOH . 
F 4 HOH A 53 753 228 HOH HOH . 
F 4 HOH A 54 754 229 HOH HOH . 
F 4 HOH A 55 755 140 HOH HOH . 
F 4 HOH A 56 756 12 HOH HOH . 
F 4 HOH A 57 757 69 HOH HOH . 
F 4 HOH A 58 758 217 HOH HOH . 
F 4 HOH A 59 759 32 HOH HOH . 
F 4 HOH A 60 760 74 HOH HOH . 
F 4 HOH A 61 761 153 HOH HOH . 
F 4 HOH A 62 762 67 HOH HOH . 
F 4 HOH A 63 763 97 HOH HOH . 
F 4 HOH A 64 764 159 HOH HOH . 
F 4 HOH A 65 765 31 HOH HOH . 
F 4 HOH A 66 766 81 HOH HOH . 
F 4 HOH A 67 767 60 HOH HOH . 
F 4 HOH A 68 768 130 HOH HOH . 
F 4 HOH A 69 769 29 HOH HOH . 
F 4 HOH A 70 770 51 HOH HOH . 
F 4 HOH A 71 771 47 HOH HOH . 
F 4 HOH A 72 772 94 HOH HOH . 
F 4 HOH A 73 773 208 HOH HOH . 
F 4 HOH A 74 774 16 HOH HOH . 
F 4 HOH A 75 775 39 HOH HOH . 
F 4 HOH A 76 776 204 HOH HOH . 
F 4 HOH A 77 777 182 HOH HOH . 
F 4 HOH A 78 778 21 HOH HOH . 
F 4 HOH A 79 779 180 HOH HOH . 
F 4 HOH A 80 780 221 HOH HOH . 
F 4 HOH A 81 781 218 HOH HOH . 
G 4 HOH B 1 701 169 HOH HOH . 
G 4 HOH B 2 702 42 HOH HOH . 
G 4 HOH B 3 703 238 HOH HOH . 
G 4 HOH B 4 704 203 HOH HOH . 
G 4 HOH B 5 705 174 HOH HOH . 
G 4 HOH B 6 706 77 HOH HOH . 
G 4 HOH B 7 707 68 HOH HOH . 
G 4 HOH B 8 708 215 HOH HOH . 
G 4 HOH B 9 709 128 HOH HOH . 
G 4 HOH B 10 710 236 HOH HOH . 
G 4 HOH B 11 711 79 HOH HOH . 
G 4 HOH B 12 712 198 HOH HOH . 
G 4 HOH B 13 713 214 HOH HOH . 
G 4 HOH B 14 714 176 HOH HOH . 
G 4 HOH B 15 715 155 HOH HOH . 
G 4 HOH B 16 716 197 HOH HOH . 
G 4 HOH B 17 717 152 HOH HOH . 
G 4 HOH B 18 718 117 HOH HOH . 
G 4 HOH B 19 719 167 HOH HOH . 
G 4 HOH B 20 720 239 HOH HOH . 
G 4 HOH B 21 721 125 HOH HOH . 
G 4 HOH B 22 722 190 HOH HOH . 
G 4 HOH B 23 723 113 HOH HOH . 
G 4 HOH B 24 724 11 HOH HOH . 
G 4 HOH B 25 725 122 HOH HOH . 
G 4 HOH B 26 726 200 HOH HOH . 
G 4 HOH B 27 727 193 HOH HOH . 
G 4 HOH B 28 728 46 HOH HOH . 
G 4 HOH B 29 729 5 HOH HOH . 
G 4 HOH B 30 730 129 HOH HOH . 
G 4 HOH B 31 731 196 HOH HOH . 
G 4 HOH B 32 732 121 HOH HOH . 
G 4 HOH B 33 733 10 HOH HOH . 
G 4 HOH B 34 734 142 HOH HOH . 
G 4 HOH B 35 735 70 HOH HOH . 
G 4 HOH B 36 736 188 HOH HOH . 
G 4 HOH B 37 737 87 HOH HOH . 
G 4 HOH B 38 738 73 HOH HOH . 
G 4 HOH B 39 739 233 HOH HOH . 
G 4 HOH B 40 740 95 HOH HOH . 
G 4 HOH B 41 741 205 HOH HOH . 
G 4 HOH B 42 742 7 HOH HOH . 
G 4 HOH B 43 743 124 HOH HOH . 
G 4 HOH B 44 744 134 HOH HOH . 
G 4 HOH B 45 745 34 HOH HOH . 
G 4 HOH B 46 746 28 HOH HOH . 
G 4 HOH B 47 747 120 HOH HOH . 
G 4 HOH B 48 748 145 HOH HOH . 
G 4 HOH B 49 749 199 HOH HOH . 
G 4 HOH B 50 750 213 HOH HOH . 
G 4 HOH B 51 751 163 HOH HOH . 
G 4 HOH B 52 752 237 HOH HOH . 
G 4 HOH B 53 753 86 HOH HOH . 
G 4 HOH B 54 754 53 HOH HOH . 
G 4 HOH B 55 755 63 HOH HOH . 
G 4 HOH B 56 756 148 HOH HOH . 
G 4 HOH B 57 757 55 HOH HOH . 
G 4 HOH B 58 758 131 HOH HOH . 
G 4 HOH B 59 759 240 HOH HOH . 
G 4 HOH B 60 760 4 HOH HOH . 
G 4 HOH B 61 761 33 HOH HOH . 
G 4 HOH B 62 762 22 HOH HOH . 
G 4 HOH B 63 763 17 HOH HOH . 
G 4 HOH B 64 764 212 HOH HOH . 
G 4 HOH B 65 765 160 HOH HOH . 
G 4 HOH B 66 766 141 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 2 22.249 61.009 -17.904 1 82.28 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . C 2 23.697 60.759 -18.335 1 82.61 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . C 2 24.621 60.907 -17.125 1 85.44 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . C 2 24.436 62.28 -16.486 1 85.59 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . C 2 22.975 62.45 -16.07 1 87.22 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . C 2 22.654 63.81 -15.48 1 90.5 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . C 2 24.078 59.323 -20.306 1 74.54 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . C 2 24.527 57.964 -20.755 1 71.32 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . C 2 23.903 59.473 -18.981 1 78.2 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . C 2 25.977 60.715 -17.512 1 87.02 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . C 2 25.301 62.429 -15.362 1 85.48 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . C 2 22.113 62.263 -17.21 1 85.46 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . C 2 23.13 64.905 -16.267 1 91.5 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . C 2 23.876 60.239 -21.102 1 73.21 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#