data_5CNJ
#
_model_server_result.job_id            9sM7RoPCITGmpvVjTa2QNA 
_model_server_result.datetime_utc      '2025-02-16 22:43:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cnj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    5CNJ 
#
_exptl.entry_id    5CNJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.292 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R,2S,4R,5R,6R)-2-amino-4-(1H-1,2,4-triazol-3-ylsulfanyl)bicyclo[3.1.0]hexane-2,6-dicarboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CNJ 
_cell.length_a            80.391 
_cell.length_b            155.087 
_cell.length_c            92.714 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CNJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 52 A CYS 50 1_555 A SG CYS 94 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 A SG CYS 357 A CYS 355 1_555 A SG CYS 364 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 A SG CYS 402 A CYS 400 1_555 A SG CYS 409 A CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 B SG CYS 52 B CYS 50 1_555 B SG CYS 94 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 357 B CYS 355 1_555 B SG CYS 364 B CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf6 B SG CYS 402 B CYS 400 1_555 B SG CYS 409 B CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 A ND2 ASN 205 A ASN 203 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
#
_chem_comp.formula           'C10 H12 N4 O4 S' 
_chem_comp.formula_weight    284.292 
_chem_comp.id                52Q 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R,2S,4R,5R,6R)-2-amino-4-(1H-1,2,4-triazol-3-ylsulfanyl)bicyclo[3.1.0]hexane-2,6-dicarboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N11 52Q sing 1 n y 
C1 N13 52Q doub 2 n y 
N11 N12 52Q sing 3 n y 
N13 C2 52Q sing 4 n y 
N12 C2 52Q doub 5 n y 
C2 S19 52Q sing 6 n n 
S19 C9 52Q sing 7 n n 
C9 C7 52Q sing 8 n n 
C9 C5 52Q sing 9 n n 
C7 C6 52Q sing 10 n n 
C7 C8 52Q sing 11 n n 
O17 C3 52Q doub 12 n n 
O15 C3 52Q sing 13 n n 
C3 C6 52Q sing 14 n n 
C6 C8 52Q sing 15 n n 
C5 C10 52Q sing 16 n n 
C8 C10 52Q sing 17 n n 
O18 C4 52Q doub 18 n n 
C10 C4 52Q sing 19 n n 
C10 N14 52Q sing 20 n n 
C4 O16 52Q sing 21 n n 
C7 H1 52Q sing 22 n n 
C6 H2 52Q sing 23 n n 
C1 H3 52Q sing 24 n n 
C5 H4 52Q sing 25 n n 
C5 H5 52Q sing 26 n n 
C8 H6 52Q sing 27 n n 
C9 H7 52Q sing 28 n n 
N11 H8 52Q sing 29 n n 
N14 H9 52Q sing 30 n n 
N14 H10 52Q sing 31 n n 
O15 H12 52Q sing 32 n n 
O16 H13 52Q sing 33 n n 
#
_atom_sites.entry_id                     5CNJ 
_atom_sites.fract_transf_matrix[1][1]    0.012439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006448 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010786 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 601 500 NAG NAG . 
D 3 52Q A 1 602 1 52Q SX1 . 
E 3 52Q B 1 601 2 52Q SX1 . 
F 4 HOH A 1 701 99 HOH HOH . 
F 4 HOH A 2 702 18 HOH HOH . 
F 4 HOH A 3 703 165 HOH HOH . 
F 4 HOH A 4 704 185 HOH HOH . 
F 4 HOH A 5 705 195 HOH HOH . 
F 4 HOH A 6 706 183 HOH HOH . 
F 4 HOH A 7 707 109 HOH HOH . 
F 4 HOH A 8 708 179 HOH HOH . 
F 4 HOH A 9 709 104 HOH HOH . 
F 4 HOH A 10 710 91 HOH HOH . 
F 4 HOH A 11 711 24 HOH HOH . 
F 4 HOH A 12 712 166 HOH HOH . 
F 4 HOH A 13 713 98 HOH HOH . 
F 4 HOH A 14 714 8 HOH HOH . 
F 4 HOH A 15 715 105 HOH HOH . 
F 4 HOH A 16 716 225 HOH HOH . 
F 4 HOH A 17 717 9 HOH HOH . 
F 4 HOH A 18 718 15 HOH HOH . 
F 4 HOH A 19 719 126 HOH HOH . 
F 4 HOH A 20 720 88 HOH HOH . 
F 4 HOH A 21 721 150 HOH HOH . 
F 4 HOH A 22 722 146 HOH HOH . 
F 4 HOH A 23 723 108 HOH HOH . 
F 4 HOH A 24 724 44 HOH HOH . 
F 4 HOH A 25 725 173 HOH HOH . 
F 4 HOH A 26 726 103 HOH HOH . 
F 4 HOH A 27 727 194 HOH HOH . 
F 4 HOH A 28 728 209 HOH HOH . 
F 4 HOH A 29 729 191 HOH HOH . 
F 4 HOH A 30 730 170 HOH HOH . 
F 4 HOH A 31 731 50 HOH HOH . 
F 4 HOH A 32 732 181 HOH HOH . 
F 4 HOH A 33 733 226 HOH HOH . 
F 4 HOH A 34 734 101 HOH HOH . 
F 4 HOH A 35 735 172 HOH HOH . 
F 4 HOH A 36 736 62 HOH HOH . 
F 4 HOH A 37 737 162 HOH HOH . 
F 4 HOH A 38 738 241 HOH HOH . 
F 4 HOH A 39 739 143 HOH HOH . 
F 4 HOH A 40 740 48 HOH HOH . 
F 4 HOH A 41 741 107 HOH HOH . 
F 4 HOH A 42 742 75 HOH HOH . 
F 4 HOH A 43 743 106 HOH HOH . 
F 4 HOH A 44 744 184 HOH HOH . 
F 4 HOH A 45 745 66 HOH HOH . 
F 4 HOH A 46 746 112 HOH HOH . 
F 4 HOH A 47 747 1 HOH HOH . 
F 4 HOH A 48 748 110 HOH HOH . 
F 4 HOH A 49 749 3 HOH HOH . 
F 4 HOH A 50 750 2 HOH HOH . 
F 4 HOH A 51 751 164 HOH HOH . 
F 4 HOH A 52 752 36 HOH HOH . 
F 4 HOH A 53 753 228 HOH HOH . 
F 4 HOH A 54 754 229 HOH HOH . 
F 4 HOH A 55 755 140 HOH HOH . 
F 4 HOH A 56 756 12 HOH HOH . 
F 4 HOH A 57 757 69 HOH HOH . 
F 4 HOH A 58 758 217 HOH HOH . 
F 4 HOH A 59 759 32 HOH HOH . 
F 4 HOH A 60 760 74 HOH HOH . 
F 4 HOH A 61 761 153 HOH HOH . 
F 4 HOH A 62 762 67 HOH HOH . 
F 4 HOH A 63 763 97 HOH HOH . 
F 4 HOH A 64 764 159 HOH HOH . 
F 4 HOH A 65 765 31 HOH HOH . 
F 4 HOH A 66 766 81 HOH HOH . 
F 4 HOH A 67 767 60 HOH HOH . 
F 4 HOH A 68 768 130 HOH HOH . 
F 4 HOH A 69 769 29 HOH HOH . 
F 4 HOH A 70 770 51 HOH HOH . 
F 4 HOH A 71 771 47 HOH HOH . 
F 4 HOH A 72 772 94 HOH HOH . 
F 4 HOH A 73 773 208 HOH HOH . 
F 4 HOH A 74 774 16 HOH HOH . 
F 4 HOH A 75 775 39 HOH HOH . 
F 4 HOH A 76 776 204 HOH HOH . 
F 4 HOH A 77 777 182 HOH HOH . 
F 4 HOH A 78 778 21 HOH HOH . 
F 4 HOH A 79 779 180 HOH HOH . 
F 4 HOH A 80 780 221 HOH HOH . 
F 4 HOH A 81 781 218 HOH HOH . 
G 4 HOH B 1 701 169 HOH HOH . 
G 4 HOH B 2 702 42 HOH HOH . 
G 4 HOH B 3 703 238 HOH HOH . 
G 4 HOH B 4 704 203 HOH HOH . 
G 4 HOH B 5 705 174 HOH HOH . 
G 4 HOH B 6 706 77 HOH HOH . 
G 4 HOH B 7 707 68 HOH HOH . 
G 4 HOH B 8 708 215 HOH HOH . 
G 4 HOH B 9 709 128 HOH HOH . 
G 4 HOH B 10 710 236 HOH HOH . 
G 4 HOH B 11 711 79 HOH HOH . 
G 4 HOH B 12 712 198 HOH HOH . 
G 4 HOH B 13 713 214 HOH HOH . 
G 4 HOH B 14 714 176 HOH HOH . 
G 4 HOH B 15 715 155 HOH HOH . 
G 4 HOH B 16 716 197 HOH HOH . 
G 4 HOH B 17 717 152 HOH HOH . 
G 4 HOH B 18 718 117 HOH HOH . 
G 4 HOH B 19 719 167 HOH HOH . 
G 4 HOH B 20 720 239 HOH HOH . 
G 4 HOH B 21 721 125 HOH HOH . 
G 4 HOH B 22 722 190 HOH HOH . 
G 4 HOH B 23 723 113 HOH HOH . 
G 4 HOH B 24 724 11 HOH HOH . 
G 4 HOH B 25 725 122 HOH HOH . 
G 4 HOH B 26 726 200 HOH HOH . 
G 4 HOH B 27 727 193 HOH HOH . 
G 4 HOH B 28 728 46 HOH HOH . 
G 4 HOH B 29 729 5 HOH HOH . 
G 4 HOH B 30 730 129 HOH HOH . 
G 4 HOH B 31 731 196 HOH HOH . 
G 4 HOH B 32 732 121 HOH HOH . 
G 4 HOH B 33 733 10 HOH HOH . 
G 4 HOH B 34 734 142 HOH HOH . 
G 4 HOH B 35 735 70 HOH HOH . 
G 4 HOH B 36 736 188 HOH HOH . 
G 4 HOH B 37 737 87 HOH HOH . 
G 4 HOH B 38 738 73 HOH HOH . 
G 4 HOH B 39 739 233 HOH HOH . 
G 4 HOH B 40 740 95 HOH HOH . 
G 4 HOH B 41 741 205 HOH HOH . 
G 4 HOH B 42 742 7 HOH HOH . 
G 4 HOH B 43 743 124 HOH HOH . 
G 4 HOH B 44 744 134 HOH HOH . 
G 4 HOH B 45 745 34 HOH HOH . 
G 4 HOH B 46 746 28 HOH HOH . 
G 4 HOH B 47 747 120 HOH HOH . 
G 4 HOH B 48 748 145 HOH HOH . 
G 4 HOH B 49 749 199 HOH HOH . 
G 4 HOH B 50 750 213 HOH HOH . 
G 4 HOH B 51 751 163 HOH HOH . 
G 4 HOH B 52 752 237 HOH HOH . 
G 4 HOH B 53 753 86 HOH HOH . 
G 4 HOH B 54 754 53 HOH HOH . 
G 4 HOH B 55 755 63 HOH HOH . 
G 4 HOH B 56 756 148 HOH HOH . 
G 4 HOH B 57 757 55 HOH HOH . 
G 4 HOH B 58 758 131 HOH HOH . 
G 4 HOH B 59 759 240 HOH HOH . 
G 4 HOH B 60 760 4 HOH HOH . 
G 4 HOH B 61 761 33 HOH HOH . 
G 4 HOH B 62 762 22 HOH HOH . 
G 4 HOH B 63 763 17 HOH HOH . 
G 4 HOH B 64 764 212 HOH HOH . 
G 4 HOH B 65 765 160 HOH HOH . 
G 4 HOH B 66 766 141 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 52Q . . . E 3 -22.707 43.527 -17.338 1 44.39 ? C7 52Q 601 B 1 
HETATM 2 C C6 52Q . . . E 3 -23.889 44.015 -18.076 1 41.34 ? C6 52Q 601 B 1 
HETATM 3 C C1 52Q . . . E 3 -21.36 44.162 -12.781 1 61 ? C1 52Q 601 B 1 
HETATM 4 C C5 52Q . . . E 3 -21.21 44.864 -18.564 1 46.16 ? C5 52Q 601 B 1 
HETATM 5 C C4 52Q . . . E 3 -20.679 43.158 -19.97 1 35.77 ? C4 52Q 601 B 1 
HETATM 6 C C3 52Q . . . E 3 -25.095 43.367 -17.768 1 43.54 ? C3 52Q 601 B 1 
HETATM 7 C C2 52Q . . . E 3 -21.917 45.17 -14.588 1 59.85 ? C2 52Q 601 B 1 
HETATM 8 C C8 52Q . . . E 3 -22.864 43.219 -18.776 1 41.32 ? C8 52Q 601 B 1 
HETATM 9 C C9 52Q . . . E 3 -21.527 44.38 -17.177 1 50.43 ? C9 52Q 601 B 1 
HETATM 10 C C10 52Q . . . E 3 -21.871 43.961 -19.553 1 42.58 ? C10 52Q 601 B 1 
HETATM 11 N N11 52Q . . . E 3 -22.563 44.624 -12.624 1 61.64 ? N11 52Q 601 B 1 
HETATM 12 N N12 52Q . . . E 3 -22.913 45.263 -13.77 1 61.8 ? N12 52Q 601 B 1 
HETATM 13 N N13 52Q . . . E 3 -20.91 44.488 -14.011 1 61.5 ? N13 52Q 601 B 1 
HETATM 14 N N14 52Q . . . E 3 -22.433 44.801 -20.613 1 41.64 ? N14 52Q 601 B 1 
HETATM 15 O O15 52Q . . . E 3 -25.034 42.121 -17.264 1 40.51 ? O15 52Q 601 B 1 
HETATM 16 O O16 52Q . . . E 3 -20.032 42.644 -19.046 1 29.48 ? O16 52Q 601 B 1 
HETATM 17 O O17 52Q . . . E 3 -26.144 44 -17.964 1 46.94 ? O17 52Q 601 B 1 
HETATM 18 O O18 52Q . . . E 3 -20.441 43.101 -21.294 1 38.6 ? O18 52Q 601 B 1 
HETATM 19 S S19 52Q . . . E 3 -21.857 45.81 -16.16 1 57.28 ? S19 52Q 601 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#