data_5CNK
#
_model_server_result.job_id            B6zw8XoMXtGgBdEFq1tSsA 
_model_server_result.datetime_utc      '2024-11-26 05:24:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cnk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    5CNK 
#
_exptl.entry_id    5CNK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.129 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLUTAMIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          130.73 
_cell.angle_gamma         90 
_cell.entry_id            5CNK 
_cell.length_a            138.344 
_cell.length_b            80.004 
_cell.length_c            206.861 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CNK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
PISA monomeric 1 software_defined_assembly 5 
PISA monomeric 1 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,O 1 1 
A,D,E,F,G,H,O 1 2 
B,I,J,K,P 2 1 
C,L,M,N,Q 2 3 
C,L,M,N,Q 3 1 
B,I,J,K,P 3 4 
A,D,E,F,G,H,O 4 1 
B,I,J,K,P 5 1 
C,L,M,N,Q 6 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 3_445 x-1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 -69.172 -40.002 0 
4 'crystal symmetry operation' 3_555 x+1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 69.172 40.002 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 59 A CYS 57 1_555 A SG CYS 101 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 363 A CYS 361 1_555 A SG CYS 375 A CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 A SG CYS 414 A CYS 412 1_555 A SG CYS 421 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 59 B CYS 57 1_555 B SG CYS 101 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 B SG CYS 363 B CYS 361 1_555 B SG CYS 375 B CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf6 B SG CYS 414 B CYS 412 1_555 B SG CYS 421 B CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf7 C SG CYS 59 C CYS 57 1_555 C SG CYS 101 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf8 C SG CYS 363 C CYS 361 1_555 C SG CYS 375 C CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf9 C SG CYS 414 C CYS 412 1_555 C SG CYS 421 C CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C5 H9 N O4' 
_chem_comp.formula_weight    147.129 
_chem_comp.id                GLU 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              'GLUTAMIC ACID' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLU sing 102 n n 
N H GLU sing 103 n n 
N H2 GLU sing 104 n n 
CA C GLU sing 105 n n 
CA CB GLU sing 106 n n 
CA HA GLU sing 107 n n 
C O GLU doub 108 n n 
C OXT GLU sing 109 n n 
CB CG GLU sing 110 n n 
CB HB2 GLU sing 111 n n 
CB HB3 GLU sing 112 n n 
CG CD GLU sing 113 n n 
CG HG2 GLU sing 114 n n 
CG HG3 GLU sing 115 n n 
CD OE1 GLU doub 116 n n 
CD OE2 GLU sing 117 n n 
OE2 HE2 GLU sing 118 n n 
OXT HXT GLU sing 119 n n 
#
_atom_sites.entry_id                     5CNK 
_atom_sites.fract_transf_matrix[1][1]    0.007228 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006224 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012499 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006379 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GLU A 1 601 1 GLU SX1 . 
E 3 IOD A 1 602 1 IOD IOD . 
F 3 IOD A 1 603 2 IOD IOD . 
G 3 IOD A 1 604 3 IOD IOD . 
H 3 IOD A 1 605 10 IOD IOD . 
I 3 IOD B 1 601 4 IOD IOD . 
J 3 IOD B 1 602 5 IOD IOD . 
K 3 IOD B 1 603 6 IOD IOD . 
L 3 IOD C 1 601 7 IOD IOD . 
M 3 IOD C 1 602 8 IOD IOD . 
N 3 IOD C 1 603 9 IOD IOD . 
O 4 HOH A 1 701 10 HOH HOH . 
O 4 HOH A 2 702 19 HOH HOH . 
O 4 HOH A 3 703 18 HOH HOH . 
O 4 HOH A 4 704 8 HOH HOH . 
O 4 HOH A 5 705 24 HOH HOH . 
O 4 HOH A 6 706 11 HOH HOH . 
O 4 HOH A 7 707 26 HOH HOH . 
O 4 HOH A 8 708 27 HOH HOH . 
P 4 HOH B 1 701 14 HOH HOH . 
P 4 HOH B 2 702 32 HOH HOH . 
P 4 HOH B 3 703 9 HOH HOH . 
P 4 HOH B 4 704 1 HOH HOH . 
Q 4 HOH C 1 701 30 HOH HOH . 
Q 4 HOH C 2 702 15 HOH HOH . 
Q 4 HOH C 3 703 12 HOH HOH . 
Q 4 HOH C 4 704 17 HOH HOH . 
Q 4 HOH C 5 705 21 HOH HOH . 
Q 4 HOH C 6 706 31 HOH HOH . 
Q 4 HOH C 7 707 16 HOH HOH . 
Q 4 HOH C 8 708 13 HOH HOH . 
Q 4 HOH C 9 709 29 HOH HOH . 
Q 4 HOH C 10 710 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLU . . . D 2 12.642 -14.827 9.451 1 41.51 ? N GLU 601 A 1 
HETATM 2 C CA GLU . . . D 2 11.32 -14.483 9.984 1 39.51 ? CA GLU 601 A 1 
HETATM 3 C C GLU . . . D 2 10.292 -14.072 8.94 1 36.55 ? C GLU 601 A 1 
HETATM 4 O O GLU . . . D 2 10.704 -14.341 7.666 1 33.81 ? O GLU 601 A 1 
HETATM 5 C CB GLU . . . D 2 11.345 -13.359 11.033 1 39 ? CB GLU 601 A 1 
HETATM 6 C CG GLU . . . D 2 12.547 -13.572 11.93 1 40.57 ? CG GLU 601 A 1 
HETATM 7 C CD GLU . . . D 2 12.33 -13.137 13.347 1 40.52 ? CD GLU 601 A 1 
HETATM 8 O OE1 GLU . . . D 2 11.432 -12.4 13.796 1 40.77 ? OE1 GLU 601 A 1 
HETATM 9 O OE2 GLU . . . D 2 13.252 -13.604 14.214 1 38.6 ? OE2 GLU 601 A 1 
HETATM 10 O OXT GLU . . . D 2 9.195 -13.586 9.174 1 35.41 ? OXT GLU 601 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           10 
#