data_5CNK # _model_server_result.job_id fkEJSDbs1o7GF6s49yx79g _model_server_result.datetime_utc '2024-11-26 05:42:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":602}' # _entry.id 5CNK # _exptl.entry_id 5CNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 130.73 _cell.angle_gamma 90 _cell.entry_id 5CNK _cell.length_a 138.344 _cell.length_b 80.004 _cell.length_c 206.861 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 PISA monomeric 1 software_defined_assembly 5 PISA monomeric 1 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,O 1 1 A,D,E,F,G,H,O 1 2 B,I,J,K,P 2 1 C,L,M,N,Q 2 3 C,L,M,N,Q 3 1 B,I,J,K,P 3 4 A,D,E,F,G,H,O 4 1 B,I,J,K,P 5 1 C,L,M,N,Q 6 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 3_445 x-1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 -69.172 -40.002 0 4 'crystal symmetry operation' 3_555 x+1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 69.172 40.002 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 57 1_555 A SG CYS 101 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 363 A CYS 361 1_555 A SG CYS 375 A CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 414 A CYS 412 1_555 A SG CYS 421 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 59 B CYS 57 1_555 B SG CYS 101 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 B SG CYS 363 B CYS 361 1_555 B SG CYS 375 B CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf6 B SG CYS 414 B CYS 412 1_555 B SG CYS 421 B CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 C SG CYS 59 C CYS 57 1_555 C SG CYS 101 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 C SG CYS 363 C CYS 361 1_555 C SG CYS 375 C CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf9 C SG CYS 414 C CYS 412 1_555 C SG CYS 421 C CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CNK _atom_sites.fract_transf_matrix[1][1] 0.007228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006224 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GLU A 1 601 1 GLU SX1 . E 3 IOD A 1 602 1 IOD IOD . F 3 IOD A 1 603 2 IOD IOD . G 3 IOD A 1 604 3 IOD IOD . H 3 IOD A 1 605 10 IOD IOD . I 3 IOD B 1 601 4 IOD IOD . J 3 IOD B 1 602 5 IOD IOD . K 3 IOD B 1 603 6 IOD IOD . L 3 IOD C 1 601 7 IOD IOD . M 3 IOD C 1 602 8 IOD IOD . N 3 IOD C 1 603 9 IOD IOD . O 4 HOH A 1 701 10 HOH HOH . O 4 HOH A 2 702 19 HOH HOH . O 4 HOH A 3 703 18 HOH HOH . O 4 HOH A 4 704 8 HOH HOH . O 4 HOH A 5 705 24 HOH HOH . O 4 HOH A 6 706 11 HOH HOH . O 4 HOH A 7 707 26 HOH HOH . O 4 HOH A 8 708 27 HOH HOH . P 4 HOH B 1 701 14 HOH HOH . P 4 HOH B 2 702 32 HOH HOH . P 4 HOH B 3 703 9 HOH HOH . P 4 HOH B 4 704 1 HOH HOH . Q 4 HOH C 1 701 30 HOH HOH . Q 4 HOH C 2 702 15 HOH HOH . Q 4 HOH C 3 703 12 HOH HOH . Q 4 HOH C 4 704 17 HOH HOH . Q 4 HOH C 5 705 21 HOH HOH . Q 4 HOH C 6 706 31 HOH HOH . Q 4 HOH C 7 707 16 HOH HOH . Q 4 HOH C 8 708 13 HOH HOH . Q 4 HOH C 9 709 29 HOH HOH . Q 4 HOH C 10 710 6 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 3 _atom_site.Cartn_x 30.169 _atom_site.Cartn_y 2.787 _atom_site.Cartn_z 58.394 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 602 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #