data_5CNM # _model_server_result.job_id Wnw2ccSCayQ6khlJ2-ML1A _model_server_result.datetime_utc '2024-11-04 22:51:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cnm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5CNM # _exptl.entry_id 5CNM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.292 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2S,4R,5R,6R)-2-amino-4-(1H-1,2,4-triazol-3-ylsulfanyl)bicyclo[3.1.0]hexane-2,6-dicarboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CNM _cell.length_a 84.892 _cell.length_b 99.025 _cell.length_c 71.172 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CNM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 1 2 A,B,C,D,E,F,G 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 57 1_555 A SG CYS 101 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 363 A CYS 361 1_555 A SG CYS 375 A CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 414 A CYS 412 1_555 A SG CYS 421 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc1 A O ILE 81 A ILE 79 1_555 F MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc2 A O ASP 84 A ASP 82 1_555 F MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc3 A O LEU 88 A LEU 86 1_555 F MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc4 F MG MG . A MG 605 1_555 G O HOH . A HOH 754 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc5 F MG MG . A MG 605 1_555 G O HOH . A HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? # _chem_comp.formula 'C10 H12 N4 O4 S' _chem_comp.formula_weight 284.292 _chem_comp.id 52Q _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2S,4R,5R,6R)-2-amino-4-(1H-1,2,4-triazol-3-ylsulfanyl)bicyclo[3.1.0]hexane-2,6-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CNM _atom_sites.fract_transf_matrix[1][1] 0.01178 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 52Q A 1 601 1 52Q SX1 . C 3 CL A 1 602 1 CL CL . D 3 CL A 1 603 2 CL CL . E 4 SO4 A 1 604 3 SO4 SO4 . F 5 MG A 1 605 4 MG MG . G 6 HOH A 1 701 162 HOH HOH . G 6 HOH A 2 702 166 HOH HOH . G 6 HOH A 3 703 51 HOH HOH . G 6 HOH A 4 704 8 HOH HOH . G 6 HOH A 5 705 20 HOH HOH . G 6 HOH A 6 706 49 HOH HOH . G 6 HOH A 7 707 80 HOH HOH . G 6 HOH A 8 708 17 HOH HOH . G 6 HOH A 9 709 32 HOH HOH . G 6 HOH A 10 710 22 HOH HOH . G 6 HOH A 11 711 130 HOH HOH . G 6 HOH A 12 712 21 HOH HOH . G 6 HOH A 13 713 83 HOH HOH . G 6 HOH A 14 714 75 HOH HOH . G 6 HOH A 15 715 104 HOH HOH . G 6 HOH A 16 716 7 HOH HOH . G 6 HOH A 17 717 78 HOH HOH . G 6 HOH A 18 718 97 HOH HOH . G 6 HOH A 19 719 105 HOH HOH . G 6 HOH A 20 720 58 HOH HOH . G 6 HOH A 21 721 82 HOH HOH . G 6 HOH A 22 722 6 HOH HOH . G 6 HOH A 23 723 5 HOH HOH . G 6 HOH A 24 724 19 HOH HOH . G 6 HOH A 25 725 30 HOH HOH . G 6 HOH A 26 726 14 HOH HOH . G 6 HOH A 27 727 43 HOH HOH . G 6 HOH A 28 728 16 HOH HOH . G 6 HOH A 29 729 1 HOH HOH . G 6 HOH A 30 730 4 HOH HOH . G 6 HOH A 31 731 159 HOH HOH . G 6 HOH A 32 732 28 HOH HOH . G 6 HOH A 33 733 26 HOH HOH . G 6 HOH A 34 734 36 HOH HOH . G 6 HOH A 35 735 147 HOH HOH . G 6 HOH A 36 736 96 HOH HOH . G 6 HOH A 37 737 27 HOH HOH . G 6 HOH A 38 738 10 HOH HOH . G 6 HOH A 39 739 44 HOH HOH . G 6 HOH A 40 740 219 HOH HOH . G 6 HOH A 41 741 56 HOH HOH . G 6 HOH A 42 742 235 HOH HOH . G 6 HOH A 43 743 11 HOH HOH . G 6 HOH A 44 744 175 HOH HOH . G 6 HOH A 45 745 52 HOH HOH . G 6 HOH A 46 746 3 HOH HOH . G 6 HOH A 47 747 29 HOH HOH . G 6 HOH A 48 748 54 HOH HOH . G 6 HOH A 49 749 180 HOH HOH . G 6 HOH A 50 750 31 HOH HOH . G 6 HOH A 51 751 221 HOH HOH . G 6 HOH A 52 752 70 HOH HOH . G 6 HOH A 53 753 68 HOH HOH . G 6 HOH A 54 754 236 HOH HOH . G 6 HOH A 55 755 183 HOH HOH . G 6 HOH A 56 756 48 HOH HOH . G 6 HOH A 57 757 24 HOH HOH . G 6 HOH A 58 758 39 HOH HOH . G 6 HOH A 59 759 34 HOH HOH . G 6 HOH A 60 760 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 52Q . . . B 2 3.274 21.553 16.931 1 47.02 ? C7 52Q 601 A 1 HETATM 2 C C6 52Q . . . B 2 4.582 22.202 17.265 1 45.44 ? C6 52Q 601 A 1 HETATM 3 C C1 52Q . . . B 2 -1.743 23.613 19.162 1 69.99 ? C1 52Q 601 A 1 HETATM 4 C C5 52Q . . . B 2 2.576 20.918 19.136 1 45.24 ? C5 52Q 601 A 1 HETATM 5 C C4 52Q . . . B 2 3.638 18.868 18.988 1 46.09 ? C4 52Q 601 A 1 HETATM 6 C C3 52Q . . . B 2 5.456 22.561 16.177 1 43.19 ? C3 52Q 601 A 1 HETATM 7 C C2 52Q . . . B 2 0.394 23.346 19.008 1 64.73 ? C2 52Q 601 A 1 HETATM 8 C C8 52Q . . . B 2 4.367 20.747 17.544 1 45.52 ? C8 52Q 601 A 1 HETATM 9 C C9 52Q . . . B 2 2.159 21.673 17.892 1 49.29 ? C9 52Q 601 A 1 HETATM 10 C C10 52Q . . . B 2 3.957 20.342 18.904 1 44.59 ? C10 52Q 601 A 1 HETATM 11 N N11 52Q . . . B 2 -1.327 23.024 20.262 1 68.92 ? N11 52Q 601 A 1 HETATM 12 N N12 52Q . . . B 2 0.03 22.853 20.168 1 67.89 ? N12 52Q 601 A 1 HETATM 13 N N13 52Q . . . B 2 -0.683 23.836 18.337 1 68.09 ? N13 52Q 601 A 1 HETATM 14 N N14 52Q . . . B 2 4.841 20.827 19.987 1 43.99 ? N14 52Q 601 A 1 HETATM 15 O O15 52Q . . . B 2 6.498 23.211 16.461 1 43.97 ? O15 52Q 601 A 1 HETATM 16 O O16 52Q . . . B 2 4.459 18.19 19.663 1 48.43 ? O16 52Q 601 A 1 HETATM 17 O O17 52Q . . . B 2 5.117 22.199 15.017 1 41.73 ? O17 52Q 601 A 1 HETATM 18 O O18 52Q . . . B 2 2.595 18.519 18.372 1 43.5 ? O18 52Q 601 A 1 HETATM 19 S S19 52Q . . . B 2 1.987 23.414 18.33 1 55.66 ? S19 52Q 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #