data_5COL # _model_server_result.job_id UKVIOKimbeOx8S_GqUtV6w _model_server_result.datetime_utc '2025-07-05 10:17:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5col # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 5COL # _exptl.entry_id 5COL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5COL _cell.length_a 69.15 _cell.length_b 88.05 _cell.length_c 142.92 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5COL _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 5COL _atom_sites.fract_transf_matrix[1][1] 0.014461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011357 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 201 1 CL CL . D 3 PGE B 1 201 1 PGE PGE . E 4 PEG B 1 202 1 PEG PEG . F 5 CIT B 1 203 1 CIT CIT . G 6 HOH A 1 301 20 HOH HOH . G 6 HOH A 2 302 10 HOH HOH . G 6 HOH A 3 303 14 HOH HOH . G 6 HOH A 4 304 21 HOH HOH . G 6 HOH A 5 305 23 HOH HOH . G 6 HOH A 6 306 6 HOH HOH . G 6 HOH A 7 307 28 HOH HOH . H 6 HOH B 1 301 12 HOH HOH . H 6 HOH B 2 302 22 HOH HOH . H 6 HOH B 3 303 5 HOH HOH . H 6 HOH B 4 304 2 HOH HOH . H 6 HOH B 5 305 1 HOH HOH . H 6 HOH B 6 306 24 HOH HOH . H 6 HOH B 7 307 7 HOH HOH . H 6 HOH B 8 308 4 HOH HOH . H 6 HOH B 9 309 19 HOH HOH . H 6 HOH B 10 310 9 HOH HOH . H 6 HOH B 11 311 11 HOH HOH . H 6 HOH B 12 312 13 HOH HOH . H 6 HOH B 13 313 16 HOH HOH . H 6 HOH B 14 314 18 HOH HOH . H 6 HOH B 15 315 25 HOH HOH . H 6 HOH B 16 316 3 HOH HOH . H 6 HOH B 17 317 27 HOH HOH . H 6 HOH B 18 318 29 HOH HOH . H 6 HOH B 19 319 8 HOH HOH . H 6 HOH B 20 320 26 HOH HOH . H 6 HOH B 21 321 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . F 5 -33.707 1.568 -29.111 0.5 78.04 ? C1 CIT 203 B 1 HETATM 2 O O1 CIT . . . F 5 -32.555 1.094 -29.039 0.5 77.93 ? O1 CIT 203 B 1 HETATM 3 O O2 CIT . . . F 5 -33.957 2.772 -28.891 0.5 77.21 ? O2 CIT 203 B 1 HETATM 4 C C2 CIT . . . F 5 -34.851 0.653 -29.486 0.5 79.97 ? C2 CIT 203 B 1 HETATM 5 C C3 CIT . . . F 5 -34.454 -0.813 -29.393 0.5 79.63 ? C3 CIT 203 B 1 HETATM 6 O O7 CIT . . . F 5 -34.435 -0.729 -27.964 0.5 78.17 ? O7 CIT 203 B 1 HETATM 7 C C4 CIT . . . F 5 -35.543 -1.74 -29.93 0.5 77.55 ? C4 CIT 203 B 1 HETATM 8 C C5 CIT . . . F 5 -35.179 -3.205 -29.836 0.5 75.59 ? C5 CIT 203 B 1 HETATM 9 O O3 CIT . . . F 5 -36.092 -4.061 -29.934 0.5 75.41 ? O3 CIT 203 B 1 HETATM 10 O O4 CIT . . . F 5 -33.98 -3.503 -29.667 0.5 68.33 ? O4 CIT 203 B 1 HETATM 11 C C6 CIT . . . F 5 -33.059 -1.066 -29.941 0.5 81 ? C6 CIT 203 B 1 HETATM 12 O O5 CIT . . . F 5 -32.859 -1.082 -31.178 0.5 74.9 ? O5 CIT 203 B 1 HETATM 13 O O6 CIT . . . F 5 -32.131 -1.249 -29.117 0.5 84.58 ? O6 CIT 203 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #