data_5COX
#
_model_server_result.job_id            EQV5-VI_GOCl7NjP_e1i9A 
_model_server_result.datetime_utc      '2024-11-14 08:52:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cox 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":671}' 
#
_entry.id    5COX 
#
_exptl.entry_id    5COX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5COX 
_cell.length_a            180.46 
_cell.length_b            134.42 
_cell.length_c            119.9 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5COX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L 1 1 
C,D,M,N,O,P,Q,R,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 36 1_555 A SG CYS 15 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 5 A CYS 37 1_555 A SG CYS 128 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 A SG CYS 9 A CYS 41 1_555 A SG CYS 25 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 A SG CYS 27 A CYS 59 1_555 A SG CYS 37 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 A SG CYS 538 A CYS 569 1_555 A SG CYS 544 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 B SG CYS 4 B CYS 36 1_555 B SG CYS 15 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 B SG CYS 5 B CYS 37 1_555 B SG CYS 128 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 B SG CYS 9 B CYS 41 1_555 B SG CYS 25 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf9 B SG CYS 27 B CYS 59 1_555 B SG CYS 37 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf10 B SG CYS 538 B CYS 569 1_555 B SG CYS 544 B CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 C SG CYS 4 C CYS 36 1_555 C SG CYS 15 C CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf12 C SG CYS 5 C CYS 37 1_555 C SG CYS 128 C CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf13 C SG CYS 9 C CYS 41 1_555 C SG CYS 25 C CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf14 C SG CYS 27 C CYS 59 1_555 C SG CYS 37 C CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf15 C SG CYS 538 C CYS 569 1_555 C SG CYS 544 C CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf16 D SG CYS 4 D CYS 36 1_555 D SG CYS 15 D CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf17 D SG CYS 5 D CYS 37 1_555 D SG CYS 128 D CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf18 D SG CYS 9 D CYS 41 1_555 D SG CYS 25 D CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf19 D SG CYS 27 D CYS 59 1_555 D SG CYS 37 D CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf20 D SG CYS 538 D CYS 569 1_555 D SG CYS 544 D CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 A ND2 ASN 36 A ASN 68 1_555 E C1 NAG . A NAG 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale2 A ND2 ASN 113 A ASN 144 1_555 F C1 NAG . A NAG 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale3 A ND2 ASN 379 A ASN 410 1_555 G C1 NAG . A NAG 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
covale ? covale4 B ND2 ASN 36 B ASN 68 1_555 I C1 NAG . B NAG 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale5 B ND2 ASN 113 B ASN 144 1_555 J C1 NAG . B NAG 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? 
covale ? covale6 B ND2 ASN 379 B ASN 410 1_555 K C1 NAG . B NAG 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale7 C ND2 ASN 36 C ASN 68 1_555 M C1 NAG . C NAG 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale8 C ND2 ASN 113 C ASN 144 1_555 N C1 NAG . C NAG 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale9 C ND2 ASN 379 C ASN 410 1_555 O C1 NAG . C NAG 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? 
covale ? covale10 D ND2 ASN 36 D ASN 68 1_555 Q C1 NAG . D NAG 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale11 D ND2 ASN 113 D ASN 144 1_555 R C1 NAG . D NAG 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale12 D ND2 ASN 379 D ASN 410 1_555 S C1 NAG . D NAG 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
metalc ? metalc1 A NE2 HIS 357 A HIS 388 1_555 H FE HEM . A HEM 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc2 B NE2 HIS 357 B HIS 388 1_555 L FE HEM . B HEM 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc3 C NE2 HIS 357 C HIS 388 1_555 P FE HEM . C HEM 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc4 D NE2 HIS 357 D HIS 388 1_555 T FE HEM . D HEM 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 317 n n 
C1 O1 NAG sing 318 n n 
C1 O5 NAG sing 319 n n 
C1 H1 NAG sing 320 n n 
C2 C3 NAG sing 321 n n 
C2 N2 NAG sing 322 n n 
C2 H2 NAG sing 323 n n 
C3 C4 NAG sing 324 n n 
C3 O3 NAG sing 325 n n 
C3 H3 NAG sing 326 n n 
C4 C5 NAG sing 327 n n 
C4 O4 NAG sing 328 n n 
C4 H4 NAG sing 329 n n 
C5 C6 NAG sing 330 n n 
C5 O5 NAG sing 331 n n 
C5 H5 NAG sing 332 n n 
C6 O6 NAG sing 333 n n 
C6 H61 NAG sing 334 n n 
C6 H62 NAG sing 335 n n 
C7 C8 NAG sing 336 n n 
C7 N2 NAG sing 337 n n 
C7 O7 NAG doub 338 n n 
C8 H81 NAG sing 339 n n 
C8 H82 NAG sing 340 n n 
C8 H83 NAG sing 341 n n 
N2 HN2 NAG sing 342 n n 
O1 HO1 NAG sing 343 n n 
O3 HO3 NAG sing 344 n n 
O4 HO4 NAG sing 345 n n 
O6 HO6 NAG sing 346 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5COX 
_atom_sites.fract_transf_matrix[1][1]    0.005541 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007439 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00834 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 661 661 NAG NAG . 
F 2 NAG A 1 671 671 NAG NAG . 
G 2 NAG A 1 681 681 NAG NAG . 
H 3 HEM A 1 682 601 HEM HEM . 
I 2 NAG B 1 661 661 NAG NAG . 
J 2 NAG B 1 671 671 NAG NAG . 
K 2 NAG B 1 681 681 NAG NAG . 
L 3 HEM B 1 682 601 HEM HEM . 
M 2 NAG C 1 661 661 NAG NAG . 
N 2 NAG C 1 671 671 NAG NAG . 
O 2 NAG C 1 681 681 NAG NAG . 
P 3 HEM C 1 682 601 HEM HEM . 
Q 2 NAG D 1 661 661 NAG NAG . 
R 2 NAG D 1 671 671 NAG NAG . 
S 2 NAG D 1 681 681 NAG NAG . 
T 3 HEM D 1 682 601 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 2 52.653 40.54 3.485 1 8.36 ? C1 NAG 671 B 1 
HETATM 2 C C2 NAG . . . J 2 51.994 41.057 2.192 1 7.42 ? C2 NAG 671 B 1 
HETATM 3 C C3 NAG . . . J 2 52.918 42.065 1.548 1 5.64 ? C3 NAG 671 B 1 
HETATM 4 C C4 NAG . . . J 2 52.943 43.208 2.504 1 5.14 ? C4 NAG 671 B 1 
HETATM 5 C C5 NAG . . . J 2 53.575 42.789 3.82 1 5.7 ? C5 NAG 671 B 1 
HETATM 6 C C6 NAG . . . J 2 53.436 43.934 4.824 1 5.36 ? C6 NAG 671 B 1 
HETATM 7 C C7 NAG . . . J 2 50.41 39.641 1.074 1 16.12 ? C7 NAG 671 B 1 
HETATM 8 C C8 NAG . . . J 2 50.148 38.504 0.093 1 17.3 ? C8 NAG 671 B 1 
HETATM 9 N N2 NAG . . . J 2 51.677 39.989 1.271 1 13.44 ? N2 NAG 671 B 1 
HETATM 10 O O3 NAG . . . J 2 52.387 42.499 0.298 1 8.29 ? O3 NAG 671 B 1 
HETATM 11 O O4 NAG . . . J 2 53.619 44.297 1.929 1 4.65 ? O4 NAG 671 B 1 
HETATM 12 O O5 NAG . . . J 2 52.868 41.646 4.391 1 10.76 ? O5 NAG 671 B 1 
HETATM 13 O O6 NAG . . . J 2 53.168 43.466 6.149 1 5.4 ? O6 NAG 671 B 1 
HETATM 14 O O7 NAG . . . J 2 49.485 40.187 1.666 1 20.52 ? O7 NAG 671 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           14 
#