data_5COY # _model_server_result.job_id 10niiXIi_eBgFmpLTcnG7Q _model_server_result.datetime_utc '2024-10-12 08:28:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5coy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 5COY # _exptl.entry_id 5COY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5COY _cell.length_a 23.601 _cell.length_b 56.196 _cell.length_c 94.168 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5COY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 Z9N _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC D 1 SUC 2 n C Z9N 2 C 2 Z9N D 1 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 10 1_555 A SG CYS 31 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 8 A CYS 11 1_555 A SG CYS 47 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 B SG CYS 7 B CYS 10 1_555 B SG CYS 31 B CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf4 B SG CYS 8 B CYS 11 1_555 B SG CYS 47 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? covale ? covale1 C C1 GLC . C GLC 1 1_555 C O2 Z9N . C Z9N 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 sing # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 300 n n P O2 PO4 sing 301 n n P O3 PO4 sing 302 n n P O4 PO4 sing 303 n n # _atom_sites.entry_id 5COY _atom_sites.fract_transf_matrix[1][1] 0.042371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010619 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PO4 A 1 101 1 PO4 PO4 . E 3 PO4 B 1 101 2 PO4 PO4 . F 4 PEG B 1 102 1 PEG PEG . G 4 PEG B 1 103 2 PEG PEG . H 5 HOH A 1 201 115 HOH HOH . H 5 HOH A 2 202 75 HOH HOH . H 5 HOH A 3 203 64 HOH HOH . H 5 HOH A 4 204 144 HOH HOH . H 5 HOH A 5 205 141 HOH HOH . H 5 HOH A 6 206 15 HOH HOH . H 5 HOH A 7 207 100 HOH HOH . H 5 HOH A 8 208 1 HOH HOH . H 5 HOH A 9 209 58 HOH HOH . H 5 HOH A 10 210 107 HOH HOH . H 5 HOH A 11 211 57 HOH HOH . H 5 HOH A 12 212 72 HOH HOH . H 5 HOH A 13 213 29 HOH HOH . H 5 HOH A 14 214 2 HOH HOH . H 5 HOH A 15 215 104 HOH HOH . H 5 HOH A 16 216 42 HOH HOH . H 5 HOH A 17 217 81 HOH HOH . H 5 HOH A 18 218 26 HOH HOH . H 5 HOH A 19 219 96 HOH HOH . H 5 HOH A 20 220 44 HOH HOH . H 5 HOH A 21 221 125 HOH HOH . H 5 HOH A 22 222 119 HOH HOH . H 5 HOH A 23 223 151 HOH HOH . H 5 HOH A 24 224 28 HOH HOH . H 5 HOH A 25 225 126 HOH HOH . H 5 HOH A 26 226 118 HOH HOH . H 5 HOH A 27 227 20 HOH HOH . H 5 HOH A 28 228 35 HOH HOH . H 5 HOH A 29 229 3 HOH HOH . H 5 HOH A 30 230 80 HOH HOH . H 5 HOH A 31 231 110 HOH HOH . H 5 HOH A 32 232 62 HOH HOH . H 5 HOH A 33 233 59 HOH HOH . H 5 HOH A 34 234 18 HOH HOH . H 5 HOH A 35 235 76 HOH HOH . H 5 HOH A 36 236 43 HOH HOH . H 5 HOH A 37 237 66 HOH HOH . H 5 HOH A 38 238 111 HOH HOH . H 5 HOH A 39 239 24 HOH HOH . H 5 HOH A 40 240 45 HOH HOH . H 5 HOH A 41 241 48 HOH HOH . H 5 HOH A 42 242 52 HOH HOH . H 5 HOH A 43 243 142 HOH HOH . H 5 HOH A 44 244 9 HOH HOH . H 5 HOH A 45 245 120 HOH HOH . H 5 HOH A 46 246 116 HOH HOH . H 5 HOH A 47 247 12 HOH HOH . H 5 HOH A 48 248 68 HOH HOH . H 5 HOH A 49 249 16 HOH HOH . H 5 HOH A 50 250 130 HOH HOH . H 5 HOH A 51 251 123 HOH HOH . H 5 HOH A 52 252 127 HOH HOH . H 5 HOH A 53 253 99 HOH HOH . H 5 HOH A 54 254 14 HOH HOH . H 5 HOH A 55 255 39 HOH HOH . H 5 HOH A 56 256 47 HOH HOH . H 5 HOH A 57 257 131 HOH HOH . H 5 HOH A 58 258 113 HOH HOH . H 5 HOH A 59 259 145 HOH HOH . H 5 HOH A 60 260 137 HOH HOH . H 5 HOH A 61 261 139 HOH HOH . H 5 HOH A 62 262 95 HOH HOH . H 5 HOH A 63 263 84 HOH HOH . H 5 HOH A 64 264 129 HOH HOH . H 5 HOH A 65 265 77 HOH HOH . I 5 HOH B 1 201 150 HOH HOH . I 5 HOH B 2 202 71 HOH HOH . I 5 HOH B 3 203 102 HOH HOH . I 5 HOH B 4 204 91 HOH HOH . I 5 HOH B 5 205 138 HOH HOH . I 5 HOH B 6 206 27 HOH HOH . I 5 HOH B 7 207 40 HOH HOH . I 5 HOH B 8 208 70 HOH HOH . I 5 HOH B 9 209 49 HOH HOH . I 5 HOH B 10 210 86 HOH HOH . I 5 HOH B 11 211 87 HOH HOH . I 5 HOH B 12 212 8 HOH HOH . I 5 HOH B 13 213 65 HOH HOH . I 5 HOH B 14 214 97 HOH HOH . I 5 HOH B 15 215 88 HOH HOH . I 5 HOH B 16 216 21 HOH HOH . I 5 HOH B 17 217 32 HOH HOH . I 5 HOH B 18 218 112 HOH HOH . I 5 HOH B 19 219 11 HOH HOH . I 5 HOH B 20 220 33 HOH HOH . I 5 HOH B 21 221 56 HOH HOH . I 5 HOH B 22 222 53 HOH HOH . I 5 HOH B 23 223 10 HOH HOH . I 5 HOH B 24 224 41 HOH HOH . I 5 HOH B 25 225 19 HOH HOH . I 5 HOH B 26 226 117 HOH HOH . I 5 HOH B 27 227 5 HOH HOH . I 5 HOH B 28 228 109 HOH HOH . I 5 HOH B 29 229 105 HOH HOH . I 5 HOH B 30 230 37 HOH HOH . I 5 HOH B 31 231 4 HOH HOH . I 5 HOH B 32 232 78 HOH HOH . I 5 HOH B 33 233 128 HOH HOH . I 5 HOH B 34 234 38 HOH HOH . I 5 HOH B 35 235 74 HOH HOH . I 5 HOH B 36 236 23 HOH HOH . I 5 HOH B 37 237 36 HOH HOH . I 5 HOH B 38 238 31 HOH HOH . I 5 HOH B 39 239 7 HOH HOH . I 5 HOH B 40 240 50 HOH HOH . I 5 HOH B 41 241 13 HOH HOH . I 5 HOH B 42 242 34 HOH HOH . I 5 HOH B 43 243 73 HOH HOH . I 5 HOH B 44 244 22 HOH HOH . I 5 HOH B 45 245 30 HOH HOH . I 5 HOH B 46 246 6 HOH HOH . I 5 HOH B 47 247 69 HOH HOH . I 5 HOH B 48 248 122 HOH HOH . I 5 HOH B 49 249 46 HOH HOH . I 5 HOH B 50 250 54 HOH HOH . I 5 HOH B 51 251 55 HOH HOH . I 5 HOH B 52 252 143 HOH HOH . I 5 HOH B 53 253 135 HOH HOH . I 5 HOH B 54 254 93 HOH HOH . I 5 HOH B 55 255 51 HOH HOH . I 5 HOH B 56 256 17 HOH HOH . I 5 HOH B 57 257 60 HOH HOH . I 5 HOH B 58 258 136 HOH HOH . I 5 HOH B 59 259 25 HOH HOH . I 5 HOH B 60 260 79 HOH HOH . I 5 HOH B 61 261 67 HOH HOH . I 5 HOH B 62 262 152 HOH HOH . I 5 HOH B 63 263 85 HOH HOH . I 5 HOH B 64 264 82 HOH HOH . I 5 HOH B 65 265 83 HOH HOH . I 5 HOH B 66 266 89 HOH HOH . I 5 HOH B 67 267 149 HOH HOH . I 5 HOH B 68 268 114 HOH HOH . I 5 HOH B 69 269 90 HOH HOH . I 5 HOH B 70 270 103 HOH HOH . I 5 HOH B 71 271 94 HOH HOH . I 5 HOH B 72 272 108 HOH HOH . I 5 HOH B 73 273 101 HOH HOH . I 5 HOH B 74 274 106 HOH HOH . I 5 HOH B 75 275 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 7.417 0.499 -20.319 1 27.54 ? P PO4 101 A 1 HETATM 2 O O1 PO4 . . . D 3 7.257 1.355 -21.547 1 29.31 ? O1 PO4 101 A 1 HETATM 3 O O2 PO4 . . . D 3 8.621 -0.407 -20.478 1 28.35 ? O2 PO4 101 A 1 HETATM 4 O O3 PO4 . . . D 3 6.169 -0.334 -20.083 1 29.75 -1 O3 PO4 101 A 1 HETATM 5 O O4 PO4 . . . D 3 7.601 1.43 -19.154 1 26.47 ? O4 PO4 101 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #