data_5CP3 # _model_server_result.job_id xHE_SmrpAqBn5frqIN0KXQ _model_server_result.datetime_utc '2024-11-08 06:57:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5CP3 # _exptl.entry_id 5CP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.26 _cell.angle_gamma 90 _cell.entry_id 5CP3 _cell.length_a 126.624 _cell.length_b 69.474 _cell.length_c 62.009 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 93 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 A SG CYS 199 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? disulf ? disulf4 B SG CYS 139 H CYS 139 1_555 B SG CYS 194 H CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc1 A OD1 ASP 31 A ASP 31 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 A O THR 97 A THR 97 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5CP3 _atom_sites.fract_transf_matrix[1][1] 0.007897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003726 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014394 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 YTZ A 1 301 1 YTZ LIG . D 4 GOL A 1 302 1 GOL GOL . E 5 CA A 1 303 1 CA CA . F 6 HOH A 1 401 23 HOH HOH . F 6 HOH A 2 402 20 HOH HOH . F 6 HOH A 3 403 17 HOH HOH . F 6 HOH A 4 404 11 HOH HOH . F 6 HOH A 5 405 7 HOH HOH . F 6 HOH A 6 406 18 HOH HOH . F 6 HOH A 7 407 27 HOH HOH . F 6 HOH A 8 408 50 HOH HOH . F 6 HOH A 9 409 35 HOH HOH . F 6 HOH A 10 410 2 HOH HOH . F 6 HOH A 11 411 13 HOH HOH . F 6 HOH A 12 412 1 HOH HOH . F 6 HOH A 13 413 31 HOH HOH . F 6 HOH A 14 414 4 HOH HOH . F 6 HOH A 15 415 48 HOH HOH . F 6 HOH A 16 416 24 HOH HOH . F 6 HOH A 17 417 6 HOH HOH . F 6 HOH A 18 418 8 HOH HOH . F 6 HOH A 19 419 26 HOH HOH . F 6 HOH A 20 420 18 HOH HOH . F 6 HOH A 21 421 52 HOH HOH . F 6 HOH A 22 422 15 HOH HOH . F 6 HOH A 23 423 1 HOH HOH . F 6 HOH A 24 424 9 HOH HOH . F 6 HOH A 25 425 22 HOH HOH . F 6 HOH A 26 426 5 HOH HOH . F 6 HOH A 27 427 36 HOH HOH . F 6 HOH A 28 428 44 HOH HOH . F 6 HOH A 29 429 41 HOH HOH . F 6 HOH A 30 430 23 HOH HOH . F 6 HOH A 31 431 21 HOH HOH . F 6 HOH A 32 432 3 HOH HOH . F 6 HOH A 33 433 29 HOH HOH . F 6 HOH A 34 434 20 HOH HOH . F 6 HOH A 35 435 42 HOH HOH . G 6 HOH H 1 301 46 HOH HOH . G 6 HOH H 2 302 12 HOH HOH . G 6 HOH H 3 303 9 HOH HOH . G 6 HOH H 4 304 17 HOH HOH . G 6 HOH H 5 305 16 HOH HOH . G 6 HOH H 6 306 19 HOH HOH . G 6 HOH H 7 307 1 HOH HOH . G 6 HOH H 8 308 15 HOH HOH . G 6 HOH H 9 309 6 HOH HOH . G 6 HOH H 10 310 1 HOH HOH . G 6 HOH H 11 311 30 HOH HOH . G 6 HOH H 12 312 12 HOH HOH . G 6 HOH H 13 313 45 HOH HOH . G 6 HOH H 14 314 5 HOH HOH . G 6 HOH H 15 315 1 HOH HOH . G 6 HOH H 16 316 13 HOH HOH . G 6 HOH H 17 317 49 HOH HOH . G 6 HOH H 18 318 2 HOH HOH . G 6 HOH H 19 319 4 HOH HOH . G 6 HOH H 20 320 22 HOH HOH . G 6 HOH H 21 321 16 HOH HOH . G 6 HOH H 22 322 8 HOH HOH . G 6 HOH H 23 323 14 HOH HOH . G 6 HOH H 24 324 51 HOH HOH . G 6 HOH H 25 325 3 HOH HOH . G 6 HOH H 26 326 33 HOH HOH . G 6 HOH H 27 327 38 HOH HOH . G 6 HOH H 28 328 34 HOH HOH . G 6 HOH H 29 329 14 HOH HOH . G 6 HOH H 30 330 10 HOH HOH . G 6 HOH H 31 331 2 HOH HOH . G 6 HOH H 32 332 10 HOH HOH . G 6 HOH H 33 333 39 HOH HOH . G 6 HOH H 34 334 19 HOH HOH . G 6 HOH H 35 335 28 HOH HOH . G 6 HOH H 36 336 25 HOH HOH . G 6 HOH H 37 337 32 HOH HOH . G 6 HOH H 38 338 47 HOH HOH . G 6 HOH H 39 339 1 HOH HOH . G 6 HOH H 40 340 40 HOH HOH . G 6 HOH H 41 341 43 HOH HOH . G 6 HOH H 42 342 3 HOH HOH . G 6 HOH H 43 343 7 HOH HOH . G 6 HOH H 44 344 2 HOH HOH . G 6 HOH H 45 345 11 HOH HOH . G 6 HOH H 46 346 2 HOH HOH . G 6 HOH H 47 347 4 HOH HOH . G 6 HOH H 48 348 3 HOH HOH . G 6 HOH H 49 349 37 HOH HOH . G 6 HOH H 50 350 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 10.024 -7.068 75.727 1 57.35 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . D 4 8.695 -7.444 75.988 1 46.73 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . D 4 10.748 -7.052 77.06 1 55.72 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . D 4 10.037 -6.205 77.968 1 68.92 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . D 4 10.792 -8.414 77.695 1 52.47 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . D 4 9.875 -8.382 78.796 1 48.68 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #