data_5CP8 # _model_server_result.job_id 43yWeDLxJuRNiZ53TC8ocA _model_server_result.datetime_utc '2024-11-30 00:03:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 5CP8 # _exptl.entry_id 5CP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CP8 _cell.length_a 99.794 _cell.length_b 99.794 _cell.length_c 139.785 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 99.794 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_655 -x+y+1,y,-z -1 0 0 0 1 0 0 0 -1 99.794 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 303 n n PA O2A NAD sing 304 n n PA O5B NAD sing 305 n n PA O3 NAD sing 306 n n O2A HOA2 NAD sing 307 n n O5B C5B NAD sing 308 n n C5B C4B NAD sing 309 n n C5B H51A NAD sing 310 n n C5B H52A NAD sing 311 n n C4B O4B NAD sing 312 n n C4B C3B NAD sing 313 n n C4B H4B NAD sing 314 n n O4B C1B NAD sing 315 n n C3B O3B NAD sing 316 n n C3B C2B NAD sing 317 n n C3B H3B NAD sing 318 n n O3B HO3A NAD sing 319 n n C2B O2B NAD sing 320 n n C2B C1B NAD sing 321 n n C2B H2B NAD sing 322 n n O2B HO2A NAD sing 323 n n C1B N9A NAD sing 324 n n C1B H1B NAD sing 325 n n N9A C8A NAD sing 326 n y N9A C4A NAD sing 327 n y C8A N7A NAD doub 328 n y C8A H8A NAD sing 329 n n N7A C5A NAD sing 330 n y C5A C6A NAD sing 331 n y C5A C4A NAD doub 332 n y C6A N6A NAD sing 333 n n C6A N1A NAD doub 334 n y N6A H61A NAD sing 335 n n N6A H62A NAD sing 336 n n N1A C2A NAD sing 337 n y C2A N3A NAD doub 338 n y C2A H2A NAD sing 339 n n N3A C4A NAD sing 340 n y O3 PN NAD sing 341 n n PN O1N NAD doub 342 n n PN O2N NAD sing 343 n n PN O5D NAD sing 344 n n O5D C5D NAD sing 345 n n C5D C4D NAD sing 346 n n C5D H51N NAD sing 347 n n C5D H52N NAD sing 348 n n C4D O4D NAD sing 349 n n C4D C3D NAD sing 350 n n C4D H4D NAD sing 351 n n O4D C1D NAD sing 352 n n C3D O3D NAD sing 353 n n C3D C2D NAD sing 354 n n C3D H3D NAD sing 355 n n O3D HO3N NAD sing 356 n n C2D O2D NAD sing 357 n n C2D C1D NAD sing 358 n n C2D H2D NAD sing 359 n n O2D HO2N NAD sing 360 n n C1D N1N NAD sing 361 n n C1D H1D NAD sing 362 n n N1N C2N NAD sing 363 n y N1N C6N NAD doub 364 n y C2N C3N NAD doub 365 n y C2N H2N NAD sing 366 n n C3N C7N NAD sing 367 n n C3N C4N NAD sing 368 n y C7N O7N NAD doub 369 n n C7N N7N NAD sing 370 n n N7N H71N NAD sing 371 n n N7N H72N NAD sing 372 n n C4N C5N NAD doub 373 n y C4N H4N NAD sing 374 n n C5N C6N NAD sing 375 n y C5N H5N NAD sing 376 n n C6N H6N NAD sing 377 n n # _atom_sites.entry_id 5CP8 _atom_sites.fract_transf_matrix[1][1] 0.010021 _atom_sites.fract_transf_matrix[1][2] 0.005785 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 300 300 NAD NAD . C 3 TCU A 1 301 301 TCU LIG . D 4 ETE A 1 302 302 ETE PEG . E 5 EPE A 1 303 303 EPE HEP . F 6 HOH A 1 401 44 HOH HOH . F 6 HOH A 2 402 89 HOH HOH . F 6 HOH A 3 403 74 HOH HOH . F 6 HOH A 4 404 48 HOH HOH . F 6 HOH A 5 405 55 HOH HOH . F 6 HOH A 6 406 66 HOH HOH . F 6 HOH A 7 407 3 HOH HOH . F 6 HOH A 8 408 43 HOH HOH . F 6 HOH A 9 409 38 HOH HOH . F 6 HOH A 10 410 51 HOH HOH . F 6 HOH A 11 411 14 HOH HOH . F 6 HOH A 12 412 19 HOH HOH . F 6 HOH A 13 413 13 HOH HOH . F 6 HOH A 14 414 2 HOH HOH . F 6 HOH A 15 415 69 HOH HOH . F 6 HOH A 16 416 56 HOH HOH . F 6 HOH A 17 417 78 HOH HOH . F 6 HOH A 18 418 82 HOH HOH . F 6 HOH A 19 419 28 HOH HOH . F 6 HOH A 20 420 72 HOH HOH . F 6 HOH A 21 421 41 HOH HOH . F 6 HOH A 22 422 46 HOH HOH . F 6 HOH A 23 423 32 HOH HOH . F 6 HOH A 24 424 16 HOH HOH . F 6 HOH A 25 425 84 HOH HOH . F 6 HOH A 26 426 68 HOH HOH . F 6 HOH A 27 427 64 HOH HOH . F 6 HOH A 28 428 17 HOH HOH . F 6 HOH A 29 429 59 HOH HOH . F 6 HOH A 30 430 21 HOH HOH . F 6 HOH A 31 431 31 HOH HOH . F 6 HOH A 32 432 15 HOH HOH . F 6 HOH A 33 433 54 HOH HOH . F 6 HOH A 34 434 30 HOH HOH . F 6 HOH A 35 435 1 HOH HOH . F 6 HOH A 36 436 29 HOH HOH . F 6 HOH A 37 437 4 HOH HOH . F 6 HOH A 38 438 26 HOH HOH . F 6 HOH A 39 439 76 HOH HOH . F 6 HOH A 40 440 5 HOH HOH . F 6 HOH A 41 441 11 HOH HOH . F 6 HOH A 42 442 18 HOH HOH . F 6 HOH A 43 443 57 HOH HOH . F 6 HOH A 44 444 79 HOH HOH . F 6 HOH A 45 445 23 HOH HOH . F 6 HOH A 46 446 6 HOH HOH . F 6 HOH A 47 447 10 HOH HOH . F 6 HOH A 48 448 25 HOH HOH . F 6 HOH A 49 449 47 HOH HOH . F 6 HOH A 50 450 52 HOH HOH . F 6 HOH A 51 451 91 HOH HOH . F 6 HOH A 52 452 75 HOH HOH . F 6 HOH A 53 453 62 HOH HOH . F 6 HOH A 54 454 7 HOH HOH . F 6 HOH A 55 455 40 HOH HOH . F 6 HOH A 56 456 35 HOH HOH . F 6 HOH A 57 457 12 HOH HOH . F 6 HOH A 58 458 39 HOH HOH . F 6 HOH A 59 459 53 HOH HOH . F 6 HOH A 60 460 20 HOH HOH . F 6 HOH A 61 461 50 HOH HOH . F 6 HOH A 62 462 37 HOH HOH . F 6 HOH A 63 463 8 HOH HOH . F 6 HOH A 64 464 45 HOH HOH . F 6 HOH A 65 465 49 HOH HOH . F 6 HOH A 66 466 9 HOH HOH . F 6 HOH A 67 467 77 HOH HOH . F 6 HOH A 68 468 86 HOH HOH . F 6 HOH A 69 469 33 HOH HOH . F 6 HOH A 70 470 80 HOH HOH . F 6 HOH A 71 471 70 HOH HOH . F 6 HOH A 72 472 63 HOH HOH . F 6 HOH A 73 473 58 HOH HOH . F 6 HOH A 74 474 67 HOH HOH . F 6 HOH A 75 475 27 HOH HOH . F 6 HOH A 76 476 87 HOH HOH . F 6 HOH A 77 477 24 HOH HOH . F 6 HOH A 78 478 71 HOH HOH . F 6 HOH A 79 479 61 HOH HOH . F 6 HOH A 80 480 85 HOH HOH . F 6 HOH A 81 481 34 HOH HOH . F 6 HOH A 82 482 36 HOH HOH . F 6 HOH A 83 483 83 HOH HOH . F 6 HOH A 84 484 90 HOH HOH . F 6 HOH A 85 485 92 HOH HOH . F 6 HOH A 86 486 81 HOH HOH . F 6 HOH A 87 487 22 HOH HOH . F 6 HOH A 88 488 94 HOH HOH . F 6 HOH A 89 489 93 HOH HOH . F 6 HOH A 90 490 73 HOH HOH . F 6 HOH A 91 491 88 HOH HOH . F 6 HOH A 92 492 42 HOH HOH . F 6 HOH A 93 493 60 HOH HOH . F 6 HOH A 94 494 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 30.534 16.251 12.515 1 48.51 ? PA NAD 300 A 1 HETATM 2 O O1A NAD . . . B 2 31.067 17.759 12.97 1 78.61 ? O1A NAD 300 A 1 HETATM 3 O O2A NAD . . . B 2 29.45 15.811 13.401 1 59.2 ? O2A NAD 300 A 1 HETATM 4 O O5B NAD . . . B 2 30.065 16.417 10.934 1 54.33 ? O5B NAD 300 A 1 HETATM 5 C C5B NAD . . . B 2 29.538 15.332 10.204 1 52.18 ? C5B NAD 300 A 1 HETATM 6 C C4B NAD . . . B 2 28.582 15.833 9.101 1 49.17 ? C4B NAD 300 A 1 HETATM 7 O O4B NAD . . . B 2 27.732 14.792 8.464 1 55.18 ? O4B NAD 300 A 1 HETATM 8 C C3B NAD . . . B 2 27.484 16.825 9.739 1 54.17 ? C3B NAD 300 A 1 HETATM 9 O O3B NAD . . . B 2 27.626 18.203 9.527 1 50.74 ? O3B NAD 300 A 1 HETATM 10 C C2B NAD . . . B 2 26.188 16.167 9.304 1 55.8 ? C2B NAD 300 A 1 HETATM 11 O O2B NAD . . . B 2 25.063 16.99 9.261 1 54.1 ? O2B NAD 300 A 1 HETATM 12 C C1B NAD . . . B 2 26.647 15.554 8.029 1 56.91 ? C1B NAD 300 A 1 HETATM 13 N N9A NAD . . . B 2 25.596 14.651 7.519 1 56.7 ? N9A NAD 300 A 1 HETATM 14 C C8A NAD . . . B 2 25.184 13.473 8.142 1 52.46 ? C8A NAD 300 A 1 HETATM 15 N N7A NAD . . . B 2 24.118 12.91 7.348 1 54.96 ? N7A NAD 300 A 1 HETATM 16 C C5A NAD . . . B 2 23.908 13.78 6.229 1 60.03 ? C5A NAD 300 A 1 HETATM 17 C C6A NAD . . . B 2 22.996 13.724 5.139 1 53.6 ? C6A NAD 300 A 1 HETATM 18 N N6A NAD . . . B 2 22.046 12.618 5.059 1 51.94 ? N6A NAD 300 A 1 HETATM 19 N N1A NAD . . . B 2 23.002 14.685 4.207 1 56.28 ? N1A NAD 300 A 1 HETATM 20 C C2A NAD . . . B 2 23.911 15.776 4.298 1 55.9 ? C2A NAD 300 A 1 HETATM 21 N N3A NAD . . . B 2 24.813 15.834 5.392 1 55.54 ? N3A NAD 300 A 1 HETATM 22 C C4A NAD . . . B 2 24.807 14.854 6.325 1 58.54 ? C4A NAD 300 A 1 HETATM 23 O O3 NAD . . . B 2 31.796 15.159 12.596 1 57.82 ? O3 NAD 300 A 1 HETATM 24 P PN NAD . . . B 2 33.223 15.467 11.798 1 46.08 ? PN NAD 300 A 1 HETATM 25 O O1N NAD . . . B 2 34.465 14.816 12.657 1 44.06 ? O1N NAD 300 A 1 HETATM 26 O O2N NAD . . . B 2 33.447 16.871 11.459 1 45.99 ? O2N NAD 300 A 1 HETATM 27 O O5D NAD . . . B 2 33.071 14.621 10.379 1 58.09 ? O5D NAD 300 A 1 HETATM 28 C C5D NAD . . . B 2 33.223 15.272 9.128 1 64.21 ? C5D NAD 300 A 1 HETATM 29 C C4D NAD . . . B 2 34.033 14.356 8.189 1 60.27 ? C4D NAD 300 A 1 HETATM 30 O O4D NAD . . . B 2 35.388 14.081 8.667 1 54.17 ? O4D NAD 300 A 1 HETATM 31 C C3D NAD . . . B 2 33.387 12.916 8.005 1 47.4 ? C3D NAD 300 A 1 HETATM 32 O O3D NAD . . . B 2 33.203 12.413 6.721 1 54.28 ? O3D NAD 300 A 1 HETATM 33 C C2D NAD . . . B 2 34.249 12.04 8.951 1 53.56 ? C2D NAD 300 A 1 HETATM 34 O O2D NAD . . . B 2 34.107 10.645 8.856 1 53.7 ? O2D NAD 300 A 1 HETATM 35 C C1D NAD . . . B 2 35.588 12.684 8.671 1 55.14 ? C1D NAD 300 A 1 HETATM 36 N N1N NAD . . . B 2 36.647 12.38 9.656 1 48.68 ? N1N NAD 300 A 1 HETATM 37 C C2N NAD . . . B 2 36.458 12.694 11.056 1 53.54 ? C2N NAD 300 A 1 HETATM 38 C C3N NAD . . . B 2 37.557 12.441 11.978 1 55.74 ? C3N NAD 300 A 1 HETATM 39 C C7N NAD . . . B 2 37.407 12.747 13.47 1 55.23 ? C7N NAD 300 A 1 HETATM 40 O O7N NAD . . . B 2 38.131 12.23 14.244 1 52.73 ? O7N NAD 300 A 1 HETATM 41 N N7N NAD . . . B 2 36.437 13.745 13.895 1 59.09 ? N7N NAD 300 A 1 HETATM 42 C C4N NAD . . . B 2 38.865 11.89 11.503 1 47.91 ? C4N NAD 300 A 1 HETATM 43 C C5N NAD . . . B 2 39.044 11.593 10.111 1 44.35 ? C5N NAD 300 A 1 HETATM 44 C C6N NAD . . . B 2 37.941 11.835 9.178 1 45.7 ? C6N NAD 300 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #