data_5CP8 # _model_server_result.job_id TMpwLyZUZJas6nxE0yOlEQ _model_server_result.datetime_utc '2024-11-30 00:16:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 5CP8 # _exptl.entry_id 5CP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CP8 _cell.length_a 99.794 _cell.length_b 99.794 _cell.length_c 139.785 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 99.794 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_655 -x+y+1,y,-z -1 0 0 0 1 0 0 0 -1 99.794 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 5CP8 _atom_sites.fract_transf_matrix[1][1] 0.010021 _atom_sites.fract_transf_matrix[1][2] 0.005785 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 300 300 NAD NAD . C 3 TCU A 1 301 301 TCU LIG . D 4 ETE A 1 302 302 ETE PEG . E 5 EPE A 1 303 303 EPE HEP . F 6 HOH A 1 401 44 HOH HOH . F 6 HOH A 2 402 89 HOH HOH . F 6 HOH A 3 403 74 HOH HOH . F 6 HOH A 4 404 48 HOH HOH . F 6 HOH A 5 405 55 HOH HOH . F 6 HOH A 6 406 66 HOH HOH . F 6 HOH A 7 407 3 HOH HOH . F 6 HOH A 8 408 43 HOH HOH . F 6 HOH A 9 409 38 HOH HOH . F 6 HOH A 10 410 51 HOH HOH . F 6 HOH A 11 411 14 HOH HOH . F 6 HOH A 12 412 19 HOH HOH . F 6 HOH A 13 413 13 HOH HOH . F 6 HOH A 14 414 2 HOH HOH . F 6 HOH A 15 415 69 HOH HOH . F 6 HOH A 16 416 56 HOH HOH . F 6 HOH A 17 417 78 HOH HOH . F 6 HOH A 18 418 82 HOH HOH . F 6 HOH A 19 419 28 HOH HOH . F 6 HOH A 20 420 72 HOH HOH . F 6 HOH A 21 421 41 HOH HOH . F 6 HOH A 22 422 46 HOH HOH . F 6 HOH A 23 423 32 HOH HOH . F 6 HOH A 24 424 16 HOH HOH . F 6 HOH A 25 425 84 HOH HOH . F 6 HOH A 26 426 68 HOH HOH . F 6 HOH A 27 427 64 HOH HOH . F 6 HOH A 28 428 17 HOH HOH . F 6 HOH A 29 429 59 HOH HOH . F 6 HOH A 30 430 21 HOH HOH . F 6 HOH A 31 431 31 HOH HOH . F 6 HOH A 32 432 15 HOH HOH . F 6 HOH A 33 433 54 HOH HOH . F 6 HOH A 34 434 30 HOH HOH . F 6 HOH A 35 435 1 HOH HOH . F 6 HOH A 36 436 29 HOH HOH . F 6 HOH A 37 437 4 HOH HOH . F 6 HOH A 38 438 26 HOH HOH . F 6 HOH A 39 439 76 HOH HOH . F 6 HOH A 40 440 5 HOH HOH . F 6 HOH A 41 441 11 HOH HOH . F 6 HOH A 42 442 18 HOH HOH . F 6 HOH A 43 443 57 HOH HOH . F 6 HOH A 44 444 79 HOH HOH . F 6 HOH A 45 445 23 HOH HOH . F 6 HOH A 46 446 6 HOH HOH . F 6 HOH A 47 447 10 HOH HOH . F 6 HOH A 48 448 25 HOH HOH . F 6 HOH A 49 449 47 HOH HOH . F 6 HOH A 50 450 52 HOH HOH . F 6 HOH A 51 451 91 HOH HOH . F 6 HOH A 52 452 75 HOH HOH . F 6 HOH A 53 453 62 HOH HOH . F 6 HOH A 54 454 7 HOH HOH . F 6 HOH A 55 455 40 HOH HOH . F 6 HOH A 56 456 35 HOH HOH . F 6 HOH A 57 457 12 HOH HOH . F 6 HOH A 58 458 39 HOH HOH . F 6 HOH A 59 459 53 HOH HOH . F 6 HOH A 60 460 20 HOH HOH . F 6 HOH A 61 461 50 HOH HOH . F 6 HOH A 62 462 37 HOH HOH . F 6 HOH A 63 463 8 HOH HOH . F 6 HOH A 64 464 45 HOH HOH . F 6 HOH A 65 465 49 HOH HOH . F 6 HOH A 66 466 9 HOH HOH . F 6 HOH A 67 467 77 HOH HOH . F 6 HOH A 68 468 86 HOH HOH . F 6 HOH A 69 469 33 HOH HOH . F 6 HOH A 70 470 80 HOH HOH . F 6 HOH A 71 471 70 HOH HOH . F 6 HOH A 72 472 63 HOH HOH . F 6 HOH A 73 473 58 HOH HOH . F 6 HOH A 74 474 67 HOH HOH . F 6 HOH A 75 475 27 HOH HOH . F 6 HOH A 76 476 87 HOH HOH . F 6 HOH A 77 477 24 HOH HOH . F 6 HOH A 78 478 71 HOH HOH . F 6 HOH A 79 479 61 HOH HOH . F 6 HOH A 80 480 85 HOH HOH . F 6 HOH A 81 481 34 HOH HOH . F 6 HOH A 82 482 36 HOH HOH . F 6 HOH A 83 483 83 HOH HOH . F 6 HOH A 84 484 90 HOH HOH . F 6 HOH A 85 485 92 HOH HOH . F 6 HOH A 86 486 81 HOH HOH . F 6 HOH A 87 487 22 HOH HOH . F 6 HOH A 88 488 94 HOH HOH . F 6 HOH A 89 489 93 HOH HOH . F 6 HOH A 90 490 73 HOH HOH . F 6 HOH A 91 491 88 HOH HOH . F 6 HOH A 92 492 42 HOH HOH . F 6 HOH A 93 493 60 HOH HOH . F 6 HOH A 94 494 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . E 5 14.835 24.96 9.961 1 96.93 ? N1 EPE 303 A 1 HETATM 2 C C2 EPE . . . E 5 14.153 25.105 11.219 1 95.76 ? C2 EPE 303 A 1 HETATM 3 C C3 EPE . . . E 5 15.287 24.814 12.175 1 93.19 ? C3 EPE 303 A 1 HETATM 4 N N4 EPE . . . E 5 15.882 23.54 11.739 1 89.62 ? N4 EPE 303 A 1 HETATM 5 C C5 EPE . . . E 5 14.861 22.846 10.968 1 91.76 ? C5 EPE 303 A 1 HETATM 6 C C6 EPE . . . E 5 14.893 23.514 9.585 1 94.95 ? C6 EPE 303 A 1 HETATM 7 C C7 EPE . . . E 5 16.233 22.916 13.059 1 85.24 ? C7 EPE 303 A 1 HETATM 8 C C8 EPE . . . E 5 17.458 23.774 13.359 1 75.16 ? C8 EPE 303 A 1 HETATM 9 O O8 EPE . . . E 5 18.097 23.54 14.598 1 62.83 ? O8 EPE 303 A 1 HETATM 10 C C9 EPE . . . E 5 14.177 25.838 8.974 1 98.25 ? C9 EPE 303 A 1 HETATM 11 C C10 EPE . . . E 5 15.142 26.33 7.888 1 99.53 ? C10 EPE 303 A 1 HETATM 12 S S EPE . . . E 5 15.418 28.003 8.183 1 206.51 ? S EPE 303 A 1 HETATM 13 O O1S EPE . . . E 5 15.43 28.619 6.762 1 205.19 ? O1S EPE 303 A 1 HETATM 14 O O2S EPE . . . E 5 16.706 28.128 9.083 1 98.47 ? O2S EPE 303 A 1 HETATM 15 O O3S EPE . . . E 5 14.421 28.373 9.379 1 89.09 ? O3S EPE 303 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #