data_5CPD # _model_server_result.job_id zIkVeJIIucSKl6ZSsMYtfw _model_server_result.datetime_utc '2024-11-26 07:39:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":209}' # _entry.id 5CPD # _exptl.entry_id 5CPD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 89.093 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ALANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CPD _cell.length_a 58.584 _cell.length_b 58.584 _cell.length_c 266.188 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 98 A GLY 98 1_555 A N CSD 99 A CSD 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C CSD 99 A CSD 99 1_555 A N LEU 100 A LEU 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale3 I C MET . A MET 208 1_555 J N ALA . A ALA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 sing metalc ? metalc1 A OE2 GLU 37 A GLU 37 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc2 A NE2 HIS 43 A HIS 43 1_555 D CD CD . A CD 203 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 A SG CSD 99 A CSD 99 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc4 A OD2 CSD 99 A CSD 99 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc5 A O LEU 105 A LEU 105 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 A OE1 GLU 128 A GLU 128 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc7 A OE2 GLU 128 A GLU 128 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc8 A OE1 GLU 130 A GLU 130 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc9 A OE2 GLU 130 A GLU 130 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc10 A OE1 GLU 132 A GLU 132 1_555 B CD CD . A CD 201 8_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc11 A OE2 GLU 132 A GLU 132 1_555 B CD CD . A CD 201 8_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 A NE2 HIS 141 A HIS 141 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc13 A NE2 HIS 145 A HIS 145 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc14 A O GLY 148 A GLY 148 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc15 A OD1 ASP 159 A ASP 159 1_555 F NA NA . A NA 205 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc16 A OD2 ASP 164 A ASP 164 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc17 B CD CD . A CD 201 1_555 K O HOH . A HOH 301 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc18 B CD CD . A CD 201 1_555 K O HOH . A HOH 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc19 B CD CD . A CD 201 1_555 K O HOH . A HOH 376 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc20 C CD CD . A CD 202 1_555 K O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc21 C CD CD . A CD 202 1_555 K O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc22 D CD CD . A CD 203 1_555 K O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc23 D CD CD . A CD 203 1_555 K O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc24 F NA NA . A NA 205 1_555 K O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc25 F NA NA . A NA 205 1_555 K O HOH . A HOH 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc26 F NA NA . A NA 205 1_555 K O HOH . A HOH 386 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc27 G NA NA . A NA 206 1_555 K O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc28 G NA NA . A NA 206 1_555 K O HOH . A HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? # _chem_comp.formula 'C3 H7 N O2' _chem_comp.formula_weight 89.093 _chem_comp.id ALA _chem_comp.mon_nstd_flag y _chem_comp.name ALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ALA sing 7 n n N H ALA sing 8 n n N H2 ALA sing 9 n n CA C ALA sing 10 n n CA CB ALA sing 11 n n CA HA ALA sing 12 n n C O ALA doub 13 n n C OXT ALA sing 14 n n CB HB1 ALA sing 15 n n CB HB2 ALA sing 16 n n CB HB3 ALA sing 17 n n OXT HXT ALA sing 18 n n # _atom_sites.entry_id 5CPD _atom_sites.fract_transf_matrix[1][1] 0.01707 _atom_sites.fract_transf_matrix[1][2] 0.009855 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 201 201 CD CD . C 2 CD A 1 202 202 CD CD . D 2 CD A 1 203 203 CD CD . E 3 ACT A 1 204 204 ACT ACT . F 4 NA A 1 205 205 NA NA . G 4 NA A 1 206 206 NA NA . H 5 GOL A 1 207 207 GOL GOL . I 6 MET A 1 208 208 MET MET . J 7 ALA A 1 209 209 ALA ALA . K 8 HOH A 1 301 304 HOH HOH . K 8 HOH A 2 302 301 HOH HOH . K 8 HOH A 3 303 302 HOH HOH . K 8 HOH A 4 304 336 HOH HOH . K 8 HOH A 5 305 303 HOH HOH . K 8 HOH A 6 306 306 HOH HOH . K 8 HOH A 7 307 309 HOH HOH . K 8 HOH A 8 308 307 HOH HOH . K 8 HOH A 9 309 310 HOH HOH . K 8 HOH A 10 310 312 HOH HOH . K 8 HOH A 11 311 311 HOH HOH . K 8 HOH A 12 312 342 HOH HOH . K 8 HOH A 13 313 305 HOH HOH . K 8 HOH A 14 314 313 HOH HOH . K 8 HOH A 15 315 316 HOH HOH . K 8 HOH A 16 316 314 HOH HOH . K 8 HOH A 17 317 308 HOH HOH . K 8 HOH A 18 318 317 HOH HOH . K 8 HOH A 19 319 315 HOH HOH . K 8 HOH A 20 320 319 HOH HOH . K 8 HOH A 21 321 324 HOH HOH . K 8 HOH A 22 322 337 HOH HOH . K 8 HOH A 23 323 338 HOH HOH . K 8 HOH A 24 324 318 HOH HOH . K 8 HOH A 25 325 320 HOH HOH . K 8 HOH A 26 326 1 HOH HOH . K 8 HOH A 27 327 327 HOH HOH . K 8 HOH A 28 328 331 HOH HOH . K 8 HOH A 29 329 321 HOH HOH . K 8 HOH A 30 330 328 HOH HOH . K 8 HOH A 31 331 323 HOH HOH . K 8 HOH A 32 332 329 HOH HOH . K 8 HOH A 33 333 326 HOH HOH . K 8 HOH A 34 334 322 HOH HOH . K 8 HOH A 35 335 333 HOH HOH . K 8 HOH A 36 336 325 HOH HOH . K 8 HOH A 37 337 332 HOH HOH . K 8 HOH A 38 338 335 HOH HOH . K 8 HOH A 39 339 346 HOH HOH . K 8 HOH A 40 340 341 HOH HOH . K 8 HOH A 41 341 353 HOH HOH . K 8 HOH A 42 342 334 HOH HOH . K 8 HOH A 43 343 345 HOH HOH . K 8 HOH A 44 344 348 HOH HOH . K 8 HOH A 45 345 330 HOH HOH . K 8 HOH A 46 346 339 HOH HOH . K 8 HOH A 47 347 347 HOH HOH . K 8 HOH A 48 348 350 HOH HOH . K 8 HOH A 49 349 340 HOH HOH . K 8 HOH A 50 350 349 HOH HOH . K 8 HOH A 51 351 356 HOH HOH . K 8 HOH A 52 352 355 HOH HOH . K 8 HOH A 53 353 343 HOH HOH . K 8 HOH A 54 354 344 HOH HOH . K 8 HOH A 55 355 351 HOH HOH . K 8 HOH A 56 356 357 HOH HOH . K 8 HOH A 57 357 370 HOH HOH . K 8 HOH A 58 358 359 HOH HOH . K 8 HOH A 59 359 365 HOH HOH . K 8 HOH A 60 360 358 HOH HOH . K 8 HOH A 61 361 360 HOH HOH . K 8 HOH A 62 362 352 HOH HOH . K 8 HOH A 63 363 354 HOH HOH . K 8 HOH A 64 364 363 HOH HOH . K 8 HOH A 65 365 367 HOH HOH . K 8 HOH A 66 366 381 HOH HOH . K 8 HOH A 67 367 362 HOH HOH . K 8 HOH A 68 368 366 HOH HOH . K 8 HOH A 69 369 361 HOH HOH . K 8 HOH A 70 370 371 HOH HOH . K 8 HOH A 71 371 364 HOH HOH . K 8 HOH A 72 372 369 HOH HOH . K 8 HOH A 73 373 372 HOH HOH . K 8 HOH A 74 374 393 HOH HOH . K 8 HOH A 75 375 368 HOH HOH . K 8 HOH A 76 376 390 HOH HOH . K 8 HOH A 77 377 373 HOH HOH . K 8 HOH A 78 378 375 HOH HOH . K 8 HOH A 79 379 374 HOH HOH . K 8 HOH A 80 380 378 HOH HOH . K 8 HOH A 81 381 380 HOH HOH . K 8 HOH A 82 382 377 HOH HOH . K 8 HOH A 83 383 379 HOH HOH . K 8 HOH A 84 384 376 HOH HOH . K 8 HOH A 85 385 382 HOH HOH . K 8 HOH A 86 386 397 HOH HOH . K 8 HOH A 87 387 386 HOH HOH . K 8 HOH A 88 388 384 HOH HOH . K 8 HOH A 89 389 383 HOH HOH . K 8 HOH A 90 390 387 HOH HOH . K 8 HOH A 91 391 388 HOH HOH . K 8 HOH A 92 392 385 HOH HOH . K 8 HOH A 93 393 392 HOH HOH . K 8 HOH A 94 394 389 HOH HOH . K 8 HOH A 95 395 391 HOH HOH . K 8 HOH A 96 396 394 HOH HOH . K 8 HOH A 97 397 395 HOH HOH . K 8 HOH A 98 398 396 HOH HOH . K 8 HOH A 99 399 398 HOH HOH . K 8 HOH A 100 400 399 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ALA . . . J 7 3.41 -13.519 -0.858 1 32.07 ? N ALA 209 A 1 HETATM 2 C CA ALA . . . J 7 2.285 -13.478 -1.77 1 38.81 ? CA ALA 209 A 1 HETATM 3 C C ALA . . . J 7 2.805 -12.99 -3.091 1 45.84 ? C ALA 209 A 1 HETATM 4 O O ALA . . . J 7 2.069 -12.308 -3.804 1 52.81 ? O ALA 209 A 1 HETATM 5 C CB ALA . . . J 7 1.242 -12.54 -1.254 1 37.75 ? CB ALA 209 A 1 HETATM 6 O OXT ALA . . . J 7 3.966 -13.241 -3.44 1 45.45 ? OXT ALA 209 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #