data_5CPF # _model_server_result.job_id bA3p0pJfV5jmcVwt18S4Hw _model_server_result.datetime_utc '2024-11-26 04:33:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":300}' # _entry.id 5CPF # _exptl.entry_id 5CPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CPF _cell.length_a 92.01 _cell.length_b 97.556 _cell.length_c 184.711 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 L N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 284 n n PA O2A NAD sing 285 n n PA O5B NAD sing 286 n n PA O3 NAD sing 287 n n O2A HOA2 NAD sing 288 n n O5B C5B NAD sing 289 n n C5B C4B NAD sing 290 n n C5B H51A NAD sing 291 n n C5B H52A NAD sing 292 n n C4B O4B NAD sing 293 n n C4B C3B NAD sing 294 n n C4B H4B NAD sing 295 n n O4B C1B NAD sing 296 n n C3B O3B NAD sing 297 n n C3B C2B NAD sing 298 n n C3B H3B NAD sing 299 n n O3B HO3A NAD sing 300 n n C2B O2B NAD sing 301 n n C2B C1B NAD sing 302 n n C2B H2B NAD sing 303 n n O2B HO2A NAD sing 304 n n C1B N9A NAD sing 305 n n C1B H1B NAD sing 306 n n N9A C8A NAD sing 307 n y N9A C4A NAD sing 308 n y C8A N7A NAD doub 309 n y C8A H8A NAD sing 310 n n N7A C5A NAD sing 311 n y C5A C6A NAD sing 312 n y C5A C4A NAD doub 313 n y C6A N6A NAD sing 314 n n C6A N1A NAD doub 315 n y N6A H61A NAD sing 316 n n N6A H62A NAD sing 317 n n N1A C2A NAD sing 318 n y C2A N3A NAD doub 319 n y C2A H2A NAD sing 320 n n N3A C4A NAD sing 321 n y O3 PN NAD sing 322 n n PN O1N NAD doub 323 n n PN O2N NAD sing 324 n n PN O5D NAD sing 325 n n O5D C5D NAD sing 326 n n C5D C4D NAD sing 327 n n C5D H51N NAD sing 328 n n C5D H52N NAD sing 329 n n C4D O4D NAD sing 330 n n C4D C3D NAD sing 331 n n C4D H4D NAD sing 332 n n O4D C1D NAD sing 333 n n C3D O3D NAD sing 334 n n C3D C2D NAD sing 335 n n C3D H3D NAD sing 336 n n O3D HO3N NAD sing 337 n n C2D O2D NAD sing 338 n n C2D C1D NAD sing 339 n n C2D H2D NAD sing 340 n n O2D HO2N NAD sing 341 n n C1D N1N NAD sing 342 n n C1D H1D NAD sing 343 n n N1N C2N NAD sing 344 n y N1N C6N NAD doub 345 n y C2N C3N NAD doub 346 n y C2N H2N NAD sing 347 n n C3N C7N NAD sing 348 n n C3N C4N NAD sing 349 n y C7N O7N NAD doub 350 n n C7N N7N NAD sing 351 n n N7N H71N NAD sing 352 n n N7N H72N NAD sing 353 n n C4N C5N NAD doub 354 n y C4N H4N NAD sing 355 n n C5N C6N NAD sing 356 n y C5N H5N NAD sing 357 n n C6N H6N NAD sing 358 n n # _atom_sites.entry_id 5CPF _atom_sites.fract_transf_matrix[1][1] 0.010868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 300 300 NAD NAD . F 3 53K A 1 301 301 53K LIG . G 2 NAD B 1 300 300 NAD NAD . H 3 53K B 1 301 301 53K LIG . I 2 NAD C 1 300 300 NAD NAD . J 3 53K C 1 301 301 53K LIG . K 3 53K D 1 301 301 53K LIG . L 2 NAD D 1 302 300 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . I 2 6.879 -47.668 35.481 1 61.28 ? PA NAD 300 C 1 HETATM 2 O O1A NAD . . . I 2 5.777 -48.249 36.583 1 64.77 ? O1A NAD 300 C 1 HETATM 3 O O2A NAD . . . I 2 8.228 -47.577 36.046 1 70.71 ? O2A NAD 300 C 1 HETATM 4 O O5B NAD . . . I 2 6.901 -48.677 34.143 1 58.58 ? O5B NAD 300 C 1 HETATM 5 C C5B NAD . . . I 2 7.358 -48.148 32.903 1 60.25 ? C5B NAD 300 C 1 HETATM 6 C C4B NAD . . . I 2 8.34 -49.015 32.08 1 57.55 ? C4B NAD 300 C 1 HETATM 7 O O4B NAD . . . I 2 9.688 -48.452 31.8 1 59.4 ? O4B NAD 300 C 1 HETATM 8 C C3B NAD . . . I 2 8.756 -50.412 32.754 1 59.7 ? C3B NAD 300 C 1 HETATM 9 O O3B NAD . . . I 2 7.889 -51.49 32.522 1 60.38 ? O3B NAD 300 C 1 HETATM 10 C C2B NAD . . . I 2 10.187 -50.587 32.243 1 57.76 ? C2B NAD 300 C 1 HETATM 11 O O2B NAD . . . I 2 10.511 -51.885 31.838 1 67.82 ? O2B NAD 300 C 1 HETATM 12 C C1B NAD . . . I 2 10.222 -49.567 31.171 1 55.56 ? C1B NAD 300 C 1 HETATM 13 N N9A NAD . . . I 2 11.593 -49.385 30.651 1 55.01 ? N9A NAD 300 C 1 HETATM 14 C C8A NAD . . . I 2 12.647 -48.7 31.245 1 60.9 ? C8A NAD 300 C 1 HETATM 15 N N7A NAD . . . I 2 13.805 -48.826 30.389 1 57.05 ? N7A NAD 300 C 1 HETATM 16 C C5A NAD . . . I 2 13.427 -49.603 29.26 1 56.28 ? C5A NAD 300 C 1 HETATM 17 C C6A NAD . . . I 2 14.153 -50.049 28.107 1 55.01 ? C6A NAD 300 C 1 HETATM 18 N N6A NAD . . . I 2 15.57 -49.705 27.926 1 51.82 ? N6A NAD 300 C 1 HETATM 19 N N1A NAD . . . I 2 13.519 -50.794 27.188 1 56.44 ? N1A NAD 300 C 1 HETATM 20 C C2A NAD . . . I 2 12.146 -51.144 27.331 1 54.19 ? C2A NAD 300 C 1 HETATM 21 N N3A NAD . . . I 2 11.432 -50.706 28.47 1 54.58 ? N3A NAD 300 C 1 HETATM 22 C C4A NAD . . . I 2 12.068 -49.955 29.411 1 56.76 ? C4A NAD 300 C 1 HETATM 23 O O3 NAD . . . I 2 6.429 -46.136 35.016 1 59.98 ? O3 NAD 300 C 1 HETATM 24 P PN NAD . . . I 2 4.835 -45.846 34.673 1 61.55 ? PN NAD 300 C 1 HETATM 25 O O1N NAD . . . I 2 4.147 -45.169 36.004 1 65.69 ? O1N NAD 300 C 1 HETATM 26 O O2N NAD . . . I 2 4.124 -47.053 34.254 1 60.18 ? O2N NAD 300 C 1 HETATM 27 O O5D NAD . . . I 2 4.798 -44.787 33.398 1 59.49 ? O5D NAD 300 C 1 HETATM 28 C C5D NAD . . . I 2 5.281 -45.249 32.148 1 56.76 ? C5D NAD 300 C 1 HETATM 29 C C4D NAD . . . I 2 5.089 -44.207 31.036 1 58.03 ? C4D NAD 300 C 1 HETATM 30 O O4D NAD . . . I 2 4.034 -43.256 31.338 1 60.33 ? O4D NAD 300 C 1 HETATM 31 C C3D NAD . . . I 2 6.317 -43.271 30.698 1 58.54 ? C3D NAD 300 C 1 HETATM 32 O O3D NAD . . . I 2 6.536 -42.903 29.345 1 62.01 ? O3D NAD 300 C 1 HETATM 33 C C2D NAD . . . I 2 6.09 -42.12 31.708 1 56.07 ? C2D NAD 300 C 1 HETATM 34 O O2D NAD . . . I 2 6.916 -41.013 31.496 1 57.43 ? O2D NAD 300 C 1 HETATM 35 C C1D NAD . . . I 2 4.593 -41.977 31.535 1 60.38 ? C1D NAD 300 C 1 HETATM 36 N N1N NAD . . . I 2 3.791 -41.264 32.569 1 59.82 ? N1N NAD 300 C 1 HETATM 37 C C2N NAD . . . I 2 3.719 -41.707 33.962 1 62.99 ? C2N NAD 300 C 1 HETATM 38 C C3N NAD . . . I 2 2.835 -41.018 34.905 1 63.26 ? C3N NAD 300 C 1 HETATM 39 C C7N NAD . . . I 2 2.687 -41.436 36.4 1 64.82 ? C7N NAD 300 C 1 HETATM 40 O O7N NAD . . . I 2 2.169 -40.697 37.162 1 60.5 ? O7N NAD 300 C 1 HETATM 41 N N7N NAD . . . I 2 3.321 -42.65 36.927 1 68.39 ? N7N NAD 300 C 1 HETATM 42 C C4N NAD . . . I 2 2.025 -39.859 34.417 1 58.22 ? C4N NAD 300 C 1 HETATM 43 C C5N NAD . . . I 2 2.092 -39.429 33.039 1 52.22 ? C5N NAD 300 C 1 HETATM 44 C C6N NAD . . . I 2 2.962 -40.124 32.105 1 52.37 ? C6N NAD 300 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #