data_5CPF
#
_model_server_result.job_id            wqMMqd-soXAgK2_v0vDk0g 
_model_server_result.datetime_utc      '2024-11-29 16:11:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cpf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":302}' 
#
_entry.id    5CPF 
#
_exptl.entry_id    5CPF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CPF 
_cell.length_a            92.01 
_cell.length_b            97.556 
_cell.length_c            184.711 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CPF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 L N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 284 n n 
PA O2A NAD sing 285 n n 
PA O5B NAD sing 286 n n 
PA O3 NAD sing 287 n n 
O2A HOA2 NAD sing 288 n n 
O5B C5B NAD sing 289 n n 
C5B C4B NAD sing 290 n n 
C5B H51A NAD sing 291 n n 
C5B H52A NAD sing 292 n n 
C4B O4B NAD sing 293 n n 
C4B C3B NAD sing 294 n n 
C4B H4B NAD sing 295 n n 
O4B C1B NAD sing 296 n n 
C3B O3B NAD sing 297 n n 
C3B C2B NAD sing 298 n n 
C3B H3B NAD sing 299 n n 
O3B HO3A NAD sing 300 n n 
C2B O2B NAD sing 301 n n 
C2B C1B NAD sing 302 n n 
C2B H2B NAD sing 303 n n 
O2B HO2A NAD sing 304 n n 
C1B N9A NAD sing 305 n n 
C1B H1B NAD sing 306 n n 
N9A C8A NAD sing 307 n y 
N9A C4A NAD sing 308 n y 
C8A N7A NAD doub 309 n y 
C8A H8A NAD sing 310 n n 
N7A C5A NAD sing 311 n y 
C5A C6A NAD sing 312 n y 
C5A C4A NAD doub 313 n y 
C6A N6A NAD sing 314 n n 
C6A N1A NAD doub 315 n y 
N6A H61A NAD sing 316 n n 
N6A H62A NAD sing 317 n n 
N1A C2A NAD sing 318 n y 
C2A N3A NAD doub 319 n y 
C2A H2A NAD sing 320 n n 
N3A C4A NAD sing 321 n y 
O3 PN NAD sing 322 n n 
PN O1N NAD doub 323 n n 
PN O2N NAD sing 324 n n 
PN O5D NAD sing 325 n n 
O5D C5D NAD sing 326 n n 
C5D C4D NAD sing 327 n n 
C5D H51N NAD sing 328 n n 
C5D H52N NAD sing 329 n n 
C4D O4D NAD sing 330 n n 
C4D C3D NAD sing 331 n n 
C4D H4D NAD sing 332 n n 
O4D C1D NAD sing 333 n n 
C3D O3D NAD sing 334 n n 
C3D C2D NAD sing 335 n n 
C3D H3D NAD sing 336 n n 
O3D HO3N NAD sing 337 n n 
C2D O2D NAD sing 338 n n 
C2D C1D NAD sing 339 n n 
C2D H2D NAD sing 340 n n 
O2D HO2N NAD sing 341 n n 
C1D N1N NAD sing 342 n n 
C1D H1D NAD sing 343 n n 
N1N C2N NAD sing 344 n y 
N1N C6N NAD doub 345 n y 
C2N C3N NAD doub 346 n y 
C2N H2N NAD sing 347 n n 
C3N C7N NAD sing 348 n n 
C3N C4N NAD sing 349 n y 
C7N O7N NAD doub 350 n n 
C7N N7N NAD sing 351 n n 
N7N H71N NAD sing 352 n n 
N7N H72N NAD sing 353 n n 
C4N C5N NAD doub 354 n y 
C4N H4N NAD sing 355 n n 
C5N C6N NAD sing 356 n y 
C5N H5N NAD sing 357 n n 
C6N H6N NAD sing 358 n n 
#
_atom_sites.entry_id                     5CPF 
_atom_sites.fract_transf_matrix[1][1]    0.010868 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010251 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005414 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 300 300 NAD NAD . 
F 3 53K A 1 301 301 53K LIG . 
G 2 NAD B 1 300 300 NAD NAD . 
H 3 53K B 1 301 301 53K LIG . 
I 2 NAD C 1 300 300 NAD NAD . 
J 3 53K C 1 301 301 53K LIG . 
K 3 53K D 1 301 301 53K LIG . 
L 2 NAD D 1 302 300 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . L 2 -24.944 -25.148 10.157 1 61.11 ? PA NAD 302 D 1 
HETATM 2 O O1A NAD . . . L 2 -25.566 -26.353 9.182 1 53.19 ? O1A NAD 302 D 1 
HETATM 3 O O2A NAD . . . L 2 -25.493 -23.826 9.839 1 63.31 ? O2A NAD 302 D 1 
HETATM 4 O O5B NAD . . . L 2 -25.308 -25.427 11.744 1 55.86 ? O5B NAD 302 D 1 
HETATM 5 C C5B NAD . . . L 2 -25.161 -24.261 12.529 1 55.81 ? C5B NAD 302 D 1 
HETATM 6 C C4B NAD . . . L 2 -26.36 -23.968 13.445 1 61.89 ? C4B NAD 302 D 1 
HETATM 7 O O4B NAD . . . L 2 -26.333 -22.652 14.132 1 60 ? O4B NAD 302 D 1 
HETATM 8 C C3B NAD . . . L 2 -27.779 -23.975 12.688 1 62.78 ? C3B NAD 302 D 1 
HETATM 9 O O3B NAD . . . L 2 -28.698 -24.964 13.089 1 66.12 ? O3B NAD 302 D 1 
HETATM 10 C C2B NAD . . . L 2 -28.198 -22.533 12.926 1 64.29 ? C2B NAD 302 D 1 
HETATM 11 O O2B NAD . . . L 2 -29.54 -22.217 12.666 1 72.75 ? O2B NAD 302 D 1 
HETATM 12 C C1B NAD . . . L 2 -27.689 -22.426 14.316 1 57.58 ? C1B NAD 302 D 1 
HETATM 13 N N9A NAD . . . L 2 -27.862 -21.064 14.823 1 56 ? N9A NAD 302 D 1 
HETATM 14 C C8A NAD . . . L 2 -27.484 -19.879 14.195 1 57.7 ? C8A NAD 302 D 1 
HETATM 15 N N7A NAD . . . L 2 -27.896 -18.799 15.054 1 60.05 ? N7A NAD 302 D 1 
HETATM 16 C C5A NAD . . . L 2 -28.519 -19.372 16.201 1 60.1 ? C5A NAD 302 D 1 
HETATM 17 C C6A NAD . . . L 2 -29.103 -18.788 17.361 1 62.16 ? C6A NAD 302 D 1 
HETATM 18 N N6A NAD . . . L 2 -29.131 -17.327 17.497 1 61.62 ? N6A NAD 302 D 1 
HETATM 19 N N1A NAD . . . L 2 -29.628 -19.584 18.308 1 66.29 ? N1A NAD 302 D 1 
HETATM 20 C C2A NAD . . . L 2 -29.61 -20.999 18.164 1 65.27 ? C2A NAD 302 D 1 
HETATM 21 N N3A NAD . . . L 2 -29.03 -21.581 17.014 1 63.13 ? N3A NAD 302 D 1 
HETATM 22 C C4A NAD . . . L 2 -28.503 -20.767 16.069 1 58.48 ? C4A NAD 302 D 1 
HETATM 23 O O3 NAD . . . L 2 -23.277 -25.067 10.074 1 54.8 ? O3 NAD 302 D 1 
HETATM 24 P PN NAD . . . L 2 -22.307 -26.097 10.956 1 52.18 ? PN NAD 302 D 1 
HETATM 25 O O1N NAD . . . L 2 -21.083 -26.573 9.97 1 53.55 ? O1N NAD 302 D 1 
HETATM 26 O O2N NAD . . . L 2 -23.031 -27.263 11.463 1 51.66 ? O2N NAD 302 D 1 
HETATM 27 O O5D NAD . . . L 2 -21.621 -25.3 12.248 1 52.32 ? O5D NAD 302 D 1 
HETATM 28 C C5D NAD . . . L 2 -22.124 -25.602 13.546 1 53.94 ? C5D NAD 302 D 1 
HETATM 29 C C4D NAD . . . L 2 -21.071 -25.541 14.663 1 49.78 ? C4D NAD 302 D 1 
HETATM 30 O O4D NAD . . . L 2 -19.85 -26.228 14.305 1 47.01 ? O4D NAD 302 D 1 
HETATM 31 C C3D NAD . . . L 2 -20.573 -24.081 15.026 1 53.06 ? C3D NAD 302 D 1 
HETATM 32 O O3D NAD . . . L 2 -20.292 -23.74 16.371 1 57.57 ? O3D NAD 302 D 1 
HETATM 33 C C2D NAD . . . L 2 -19.416 -23.904 14.016 1 50.33 ? C2D NAD 302 D 1 
HETATM 34 O O2D NAD . . . L 2 -18.616 -22.765 14.202 1 51.91 ? O2D NAD 302 D 1 
HETATM 35 C C1D NAD . . . L 2 -18.821 -25.274 14.209 1 51.18 ? C1D NAD 302 D 1 
HETATM 36 N N1N NAD . . . L 2 -17.786 -25.686 13.232 1 52.42 ? N1N NAD 302 D 1 
HETATM 37 C C2N NAD . . . L 2 -18.1 -25.903 11.833 1 49.33 ? C2N NAD 302 D 1 
HETATM 38 C C3N NAD . . . L 2 -17.028 -26.343 10.962 1 49.4 ? C3N NAD 302 D 1 
HETATM 39 C C7N NAD . . . L 2 -17.299 -26.583 9.466 1 54.57 ? C7N NAD 302 D 1 
HETATM 40 O O7N NAD . . . L 2 -16.548 -27.218 8.799 1 51.69 ? O7N NAD 302 D 1 
HETATM 41 N N7N NAD . . . L 2 -18.543 -26.059 8.908 1 57.77 ? N7N NAD 302 D 1 
HETATM 42 C C4N NAD . . . L 2 -15.651 -26.565 11.487 1 49.51 ? C4N NAD 302 D 1 
HETATM 43 C C5N NAD . . . L 2 -15.34 -26.354 12.875 1 46.12 ? C5N NAD 302 D 1 
HETATM 44 C C6N NAD . . . L 2 -16.41 -25.916 13.751 1 49.84 ? C6N NAD 302 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           44 
#