data_5CQA # _model_server_result.job_id -5I1kmssstWe4IZiamXC4A _model_server_result.datetime_utc '2024-11-17 05:18:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cqa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 5CQA # _exptl.entry_id 5CQA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.227 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-methyl-2,3-dihydrothieno[3,4-b][1,4]dioxine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CQA _cell.length_a 83.16 _cell.length_b 96.94 _cell.length_c 58.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CQA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H9 N O3 S' _chem_comp.formula_weight 199.227 _chem_comp.id 2LY _chem_comp.mon_nstd_flag . _chem_comp.name N-methyl-2,3-dihydrothieno[3,4-b][1,4]dioxine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 O09 2LY sing 1 n n C10 C11 2LY sing 2 n n O09 C06 2LY sing 3 n n C06 C05 2LY sing 4 n y C06 C07 2LY doub 5 n y O12 C05 2LY sing 6 n n O12 C11 2LY sing 7 n n C05 C04 2LY doub 8 n y C07 S08 2LY sing 9 n y N02 C01 2LY sing 10 n n N02 C03 2LY sing 11 n n C04 S08 2LY sing 12 n y C04 C03 2LY sing 13 n n C03 O13 2LY doub 14 n n C01 H1 2LY sing 15 n n C01 H2 2LY sing 16 n n C01 H3 2LY sing 17 n n N02 H4 2LY sing 18 n n C07 H5 2LY sing 19 n n C10 H6 2LY sing 20 n n C10 H7 2LY sing 21 n n C11 H8 2LY sing 22 n n C11 H9 2LY sing 23 n n # _atom_sites.entry_id 5CQA _atom_sites.fract_transf_matrix[1][1] 0.012025 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2LY A 1 2001 1 2LY LIG . C 3 EDO A 1 2002 1 EDO EDO . D 4 HOH A 1 2101 158 HOH HOH . D 4 HOH A 2 2102 63 HOH HOH . D 4 HOH A 3 2103 97 HOH HOH . D 4 HOH A 4 2104 37 HOH HOH . D 4 HOH A 5 2105 6 HOH HOH . D 4 HOH A 6 2106 41 HOH HOH . D 4 HOH A 7 2107 45 HOH HOH . D 4 HOH A 8 2108 155 HOH HOH . D 4 HOH A 9 2109 9 HOH HOH . D 4 HOH A 10 2110 51 HOH HOH . D 4 HOH A 11 2111 39 HOH HOH . D 4 HOH A 12 2112 85 HOH HOH . D 4 HOH A 13 2113 70 HOH HOH . D 4 HOH A 14 2114 49 HOH HOH . D 4 HOH A 15 2115 22 HOH HOH . D 4 HOH A 16 2116 10 HOH HOH . D 4 HOH A 17 2117 38 HOH HOH . D 4 HOH A 18 2118 125 HOH HOH . D 4 HOH A 19 2119 137 HOH HOH . D 4 HOH A 20 2120 72 HOH HOH . D 4 HOH A 21 2121 35 HOH HOH . D 4 HOH A 22 2122 26 HOH HOH . D 4 HOH A 23 2123 40 HOH HOH . D 4 HOH A 24 2124 47 HOH HOH . D 4 HOH A 25 2125 24 HOH HOH . D 4 HOH A 26 2126 78 HOH HOH . D 4 HOH A 27 2127 29 HOH HOH . D 4 HOH A 28 2128 66 HOH HOH . D 4 HOH A 29 2129 46 HOH HOH . D 4 HOH A 30 2130 25 HOH HOH . D 4 HOH A 31 2131 65 HOH HOH . D 4 HOH A 32 2132 7 HOH HOH . D 4 HOH A 33 2133 54 HOH HOH . D 4 HOH A 34 2134 42 HOH HOH . D 4 HOH A 35 2135 20 HOH HOH . D 4 HOH A 36 2136 112 HOH HOH . D 4 HOH A 37 2137 33 HOH HOH . D 4 HOH A 38 2138 16 HOH HOH . D 4 HOH A 39 2139 96 HOH HOH . D 4 HOH A 40 2140 74 HOH HOH . D 4 HOH A 41 2141 86 HOH HOH . D 4 HOH A 42 2142 31 HOH HOH . D 4 HOH A 43 2143 48 HOH HOH . D 4 HOH A 44 2144 134 HOH HOH . D 4 HOH A 45 2145 88 HOH HOH . D 4 HOH A 46 2146 64 HOH HOH . D 4 HOH A 47 2147 5 HOH HOH . D 4 HOH A 48 2148 92 HOH HOH . D 4 HOH A 49 2149 113 HOH HOH . D 4 HOH A 50 2150 17 HOH HOH . D 4 HOH A 51 2151 21 HOH HOH . D 4 HOH A 52 2152 118 HOH HOH . D 4 HOH A 53 2153 2 HOH HOH . D 4 HOH A 54 2154 124 HOH HOH . D 4 HOH A 55 2155 91 HOH HOH . D 4 HOH A 56 2156 119 HOH HOH . D 4 HOH A 57 2157 80 HOH HOH . D 4 HOH A 58 2158 168 HOH HOH . D 4 HOH A 59 2159 98 HOH HOH . D 4 HOH A 60 2160 75 HOH HOH . D 4 HOH A 61 2161 141 HOH HOH . D 4 HOH A 62 2162 95 HOH HOH . D 4 HOH A 63 2163 18 HOH HOH . D 4 HOH A 64 2164 55 HOH HOH . D 4 HOH A 65 2165 4 HOH HOH . D 4 HOH A 66 2166 36 HOH HOH . D 4 HOH A 67 2167 89 HOH HOH . D 4 HOH A 68 2168 77 HOH HOH . D 4 HOH A 69 2169 14 HOH HOH . D 4 HOH A 70 2170 106 HOH HOH . D 4 HOH A 71 2171 67 HOH HOH . D 4 HOH A 72 2172 61 HOH HOH . D 4 HOH A 73 2173 1 HOH HOH . D 4 HOH A 74 2174 52 HOH HOH . D 4 HOH A 75 2175 101 HOH HOH . D 4 HOH A 76 2176 135 HOH HOH . D 4 HOH A 77 2177 87 HOH HOH . D 4 HOH A 78 2178 83 HOH HOH . D 4 HOH A 79 2179 12 HOH HOH . D 4 HOH A 80 2180 138 HOH HOH . D 4 HOH A 81 2181 53 HOH HOH . D 4 HOH A 82 2182 28 HOH HOH . D 4 HOH A 83 2183 99 HOH HOH . D 4 HOH A 84 2184 151 HOH HOH . D 4 HOH A 85 2185 116 HOH HOH . D 4 HOH A 86 2186 100 HOH HOH . D 4 HOH A 87 2187 94 HOH HOH . D 4 HOH A 88 2188 19 HOH HOH . D 4 HOH A 89 2189 84 HOH HOH . D 4 HOH A 90 2190 11 HOH HOH . D 4 HOH A 91 2191 121 HOH HOH . D 4 HOH A 92 2192 117 HOH HOH . D 4 HOH A 93 2193 3 HOH HOH . D 4 HOH A 94 2194 15 HOH HOH . D 4 HOH A 95 2195 131 HOH HOH . D 4 HOH A 96 2196 59 HOH HOH . D 4 HOH A 97 2197 167 HOH HOH . D 4 HOH A 98 2198 140 HOH HOH . D 4 HOH A 99 2199 128 HOH HOH . D 4 HOH A 100 2200 126 HOH HOH . D 4 HOH A 101 2201 58 HOH HOH . D 4 HOH A 102 2202 79 HOH HOH . D 4 HOH A 103 2203 157 HOH HOH . D 4 HOH A 104 2204 164 HOH HOH . D 4 HOH A 105 2205 160 HOH HOH . D 4 HOH A 106 2206 162 HOH HOH . D 4 HOH A 107 2207 30 HOH HOH . D 4 HOH A 108 2208 109 HOH HOH . D 4 HOH A 109 2209 27 HOH HOH . D 4 HOH A 110 2210 8 HOH HOH . D 4 HOH A 111 2211 34 HOH HOH . D 4 HOH A 112 2212 13 HOH HOH . D 4 HOH A 113 2213 159 HOH HOH . D 4 HOH A 114 2214 56 HOH HOH . D 4 HOH A 115 2215 127 HOH HOH . D 4 HOH A 116 2216 147 HOH HOH . D 4 HOH A 117 2217 104 HOH HOH . D 4 HOH A 118 2218 71 HOH HOH . D 4 HOH A 119 2219 23 HOH HOH . D 4 HOH A 120 2220 154 HOH HOH . D 4 HOH A 121 2221 142 HOH HOH . D 4 HOH A 122 2222 110 HOH HOH . D 4 HOH A 123 2223 111 HOH HOH . D 4 HOH A 124 2224 149 HOH HOH . D 4 HOH A 125 2225 136 HOH HOH . D 4 HOH A 126 2226 44 HOH HOH . D 4 HOH A 127 2227 144 HOH HOH . D 4 HOH A 128 2228 153 HOH HOH . D 4 HOH A 129 2229 107 HOH HOH . D 4 HOH A 130 2230 143 HOH HOH . D 4 HOH A 131 2231 163 HOH HOH . D 4 HOH A 132 2232 146 HOH HOH . D 4 HOH A 133 2233 32 HOH HOH . D 4 HOH A 134 2234 62 HOH HOH . D 4 HOH A 135 2235 103 HOH HOH . D 4 HOH A 136 2236 108 HOH HOH . D 4 HOH A 137 2237 50 HOH HOH . D 4 HOH A 138 2238 115 HOH HOH . D 4 HOH A 139 2239 102 HOH HOH . D 4 HOH A 140 2240 60 HOH HOH . D 4 HOH A 141 2241 114 HOH HOH . D 4 HOH A 142 2242 156 HOH HOH . D 4 HOH A 143 2243 129 HOH HOH . D 4 HOH A 144 2244 68 HOH HOH . D 4 HOH A 145 2245 150 HOH HOH . D 4 HOH A 146 2246 122 HOH HOH . D 4 HOH A 147 2247 105 HOH HOH . D 4 HOH A 148 2248 90 HOH HOH . D 4 HOH A 149 2249 165 HOH HOH . D 4 HOH A 150 2250 82 HOH HOH . D 4 HOH A 151 2251 93 HOH HOH . D 4 HOH A 152 2252 81 HOH HOH . D 4 HOH A 153 2253 57 HOH HOH . D 4 HOH A 154 2254 161 HOH HOH . D 4 HOH A 155 2255 73 HOH HOH . D 4 HOH A 156 2256 120 HOH HOH . D 4 HOH A 157 2257 43 HOH HOH . D 4 HOH A 158 2258 148 HOH HOH . D 4 HOH A 159 2259 139 HOH HOH . D 4 HOH A 160 2260 132 HOH HOH . D 4 HOH A 161 2261 152 HOH HOH . D 4 HOH A 162 2262 69 HOH HOH . D 4 HOH A 163 2263 133 HOH HOH . D 4 HOH A 164 2264 145 HOH HOH . D 4 HOH A 165 2265 123 HOH HOH . D 4 HOH A 166 2266 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 2LY . . . B 2 16.266 36.856 29.85 0.82 27.4 ? C01 2LY 2001 A 1 HETATM 2 N N02 2LY . . . B 2 15.093 37.703 29.719 0.82 29.61 ? N02 2LY 2001 A 1 HETATM 3 C C03 2LY . . . B 2 15.163 39.03 29.84 0.82 28.7 ? C03 2LY 2001 A 1 HETATM 4 C C04 2LY . . . B 2 13.898 39.771 29.657 0.82 29.99 ? C04 2LY 2001 A 1 HETATM 5 C C05 2LY . . . B 2 12.605 39.272 29.478 0.82 35.33 ? C05 2LY 2001 A 1 HETATM 6 C C06 2LY . . . B 2 11.648 40.291 29.332 0.82 33.64 ? C06 2LY 2001 A 1 HETATM 7 C C07 2LY . . . B 2 12.194 41.56 29.4 0.82 35.7 ? C07 2LY 2001 A 1 HETATM 8 S S08 2LY . . . B 2 13.859 41.454 29.633 0.82 34.12 ? S08 2LY 2001 A 1 HETATM 9 O O09 2LY . . . B 2 10.216 39.988 29.142 0.82 42.07 ? O09 2LY 2001 A 1 HETATM 10 C C10 2LY . . . B 2 9.951 38.618 29.513 0.82 38.89 ? C10 2LY 2001 A 1 HETATM 11 C C11 2LY . . . B 2 10.927 37.673 28.885 0.82 36.59 ? C11 2LY 2001 A 1 HETATM 12 O O12 2LY . . . B 2 12.251 37.835 29.43 0.82 32.85 ? O12 2LY 2001 A 1 HETATM 13 O O13 2LY . . . B 2 16.22 39.625 30.098 0.82 26.24 ? O13 2LY 2001 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #