data_5CQK # _model_server_result.job_id fClGhLKX4u2RHjM8k5aR5Q _model_server_result.datetime_utc '2024-11-22 17:06:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cqk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5CQK # _exptl.entry_id 5CQK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CQK _cell.length_a 50.63 _cell.length_b 54.04 _cell.length_c 66.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CQK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 60 A HIS 253 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc2 A OD1 ASP 67 A ASP 260 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc3 A SG CYS 91 A CYS 284 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc4 A SG CYS 96 A CYS 289 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 A O ASP 121 A ASP 314 1_555 G NA NA . A NA 406 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc6 B ZN ZN . A ZN 401 1_555 H O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 E O1 PGE . A PGE 404 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc8 E O2 PGE . A PGE 404 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc9 F O4 PGE . A PGE 405 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CQK _atom_sites.fract_transf_matrix[1][1] 0.019751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 2 ZN ZN . C 3 GOL A 1 402 1 GOL GOL . D 3 GOL A 1 403 3 GOL GOL . E 4 PGE A 1 404 1 PGE PGE . F 4 PGE A 1 405 2 PGE PGE . G 5 NA A 1 406 1 NA NA . H 6 HOH A 1 501 55 HOH HOH . H 6 HOH A 2 502 18 HOH HOH . H 6 HOH A 3 503 77 HOH HOH . H 6 HOH A 4 504 22 HOH HOH . H 6 HOH A 5 505 67 HOH HOH . H 6 HOH A 6 506 89 HOH HOH . H 6 HOH A 7 507 70 HOH HOH . H 6 HOH A 8 508 85 HOH HOH . H 6 HOH A 9 509 8 HOH HOH . H 6 HOH A 10 510 50 HOH HOH . H 6 HOH A 11 511 21 HOH HOH . H 6 HOH A 12 512 48 HOH HOH . H 6 HOH A 13 513 16 HOH HOH . H 6 HOH A 14 514 4 HOH HOH . H 6 HOH A 15 515 41 HOH HOH . H 6 HOH A 16 516 51 HOH HOH . H 6 HOH A 17 517 88 HOH HOH . H 6 HOH A 18 518 62 HOH HOH . H 6 HOH A 19 519 36 HOH HOH . H 6 HOH A 20 520 14 HOH HOH . H 6 HOH A 21 521 75 HOH HOH . H 6 HOH A 22 522 39 HOH HOH . H 6 HOH A 23 523 5 HOH HOH . H 6 HOH A 24 524 9 HOH HOH . H 6 HOH A 25 525 66 HOH HOH . H 6 HOH A 26 526 3 HOH HOH . H 6 HOH A 27 527 7 HOH HOH . H 6 HOH A 28 528 32 HOH HOH . H 6 HOH A 29 529 53 HOH HOH . H 6 HOH A 30 530 30 HOH HOH . H 6 HOH A 31 531 1 HOH HOH . H 6 HOH A 32 532 19 HOH HOH . H 6 HOH A 33 533 27 HOH HOH . H 6 HOH A 34 534 6 HOH HOH . H 6 HOH A 35 535 10 HOH HOH . H 6 HOH A 36 536 17 HOH HOH . H 6 HOH A 37 537 29 HOH HOH . H 6 HOH A 38 538 82 HOH HOH . H 6 HOH A 39 539 23 HOH HOH . H 6 HOH A 40 540 69 HOH HOH . H 6 HOH A 41 541 54 HOH HOH . H 6 HOH A 42 542 34 HOH HOH . H 6 HOH A 43 543 40 HOH HOH . H 6 HOH A 44 544 56 HOH HOH . H 6 HOH A 45 545 25 HOH HOH . H 6 HOH A 46 546 24 HOH HOH . H 6 HOH A 47 547 52 HOH HOH . H 6 HOH A 48 548 15 HOH HOH . H 6 HOH A 49 549 57 HOH HOH . H 6 HOH A 50 550 38 HOH HOH . H 6 HOH A 51 551 31 HOH HOH . H 6 HOH A 52 552 46 HOH HOH . H 6 HOH A 53 553 65 HOH HOH . H 6 HOH A 54 554 12 HOH HOH . H 6 HOH A 55 555 59 HOH HOH . H 6 HOH A 56 556 35 HOH HOH . H 6 HOH A 57 557 33 HOH HOH . H 6 HOH A 58 558 43 HOH HOH . H 6 HOH A 59 559 11 HOH HOH . H 6 HOH A 60 560 2 HOH HOH . H 6 HOH A 61 561 98 HOH HOH . H 6 HOH A 62 562 83 HOH HOH . H 6 HOH A 63 563 13 HOH HOH . H 6 HOH A 64 564 93 HOH HOH . H 6 HOH A 65 565 20 HOH HOH . H 6 HOH A 66 566 60 HOH HOH . H 6 HOH A 67 567 72 HOH HOH . H 6 HOH A 68 568 26 HOH HOH . H 6 HOH A 69 569 49 HOH HOH . H 6 HOH A 70 570 45 HOH HOH . H 6 HOH A 71 571 28 HOH HOH . H 6 HOH A 72 572 47 HOH HOH . H 6 HOH A 73 573 68 HOH HOH . H 6 HOH A 74 574 64 HOH HOH . H 6 HOH A 75 575 63 HOH HOH . H 6 HOH A 76 576 61 HOH HOH . H 6 HOH A 77 577 86 HOH HOH . H 6 HOH A 78 578 87 HOH HOH . H 6 HOH A 79 579 84 HOH HOH . H 6 HOH A 80 580 95 HOH HOH . H 6 HOH A 81 581 91 HOH HOH . H 6 HOH A 82 582 76 HOH HOH . H 6 HOH A 83 583 80 HOH HOH . H 6 HOH A 84 584 97 HOH HOH . H 6 HOH A 85 585 78 HOH HOH . H 6 HOH A 86 586 74 HOH HOH . H 6 HOH A 87 587 58 HOH HOH . H 6 HOH A 88 588 90 HOH HOH . H 6 HOH A 89 589 81 HOH HOH . H 6 HOH A 90 590 37 HOH HOH . H 6 HOH A 91 591 92 HOH HOH . H 6 HOH A 92 592 42 HOH HOH . H 6 HOH A 93 593 79 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.466 _atom_site.Cartn_y -7.618 _atom_site.Cartn_z 15.304 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #