data_5CQK
#
_model_server_result.job_id            qaCe9m4ZxZTuzJK7VlNTdw 
_model_server_result.datetime_utc      '2024-11-26 01:22:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cqk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5CQK 
#
_exptl.entry_id    5CQK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CQK 
_cell.length_a            50.63 
_cell.length_b            54.04 
_cell.length_c            66.42 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CQK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 60 A HIS 253 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc2 A OD1 ASP 67 A ASP 260 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc3 A SG CYS 91 A CYS 284 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc4 A SG CYS 96 A CYS 289 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc5 A O ASP 121 A ASP 314 1_555 G NA NA . A NA 406 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? 
metalc ? metalc6 B ZN ZN . A ZN 401 1_555 H O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc7 E O1 PGE . A PGE 404 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? 
metalc ? metalc8 E O2 PGE . A PGE 404 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
metalc ? metalc9 F O4 PGE . A PGE 405 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5CQK 
_atom_sites.fract_transf_matrix[1][1]    0.019751 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018505 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015056 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 2 ZN ZN . 
C 3 GOL A 1 402 1 GOL GOL . 
D 3 GOL A 1 403 3 GOL GOL . 
E 4 PGE A 1 404 1 PGE PGE . 
F 4 PGE A 1 405 2 PGE PGE . 
G 5 NA A 1 406 1 NA NA . 
H 6 HOH A 1 501 55 HOH HOH . 
H 6 HOH A 2 502 18 HOH HOH . 
H 6 HOH A 3 503 77 HOH HOH . 
H 6 HOH A 4 504 22 HOH HOH . 
H 6 HOH A 5 505 67 HOH HOH . 
H 6 HOH A 6 506 89 HOH HOH . 
H 6 HOH A 7 507 70 HOH HOH . 
H 6 HOH A 8 508 85 HOH HOH . 
H 6 HOH A 9 509 8 HOH HOH . 
H 6 HOH A 10 510 50 HOH HOH . 
H 6 HOH A 11 511 21 HOH HOH . 
H 6 HOH A 12 512 48 HOH HOH . 
H 6 HOH A 13 513 16 HOH HOH . 
H 6 HOH A 14 514 4 HOH HOH . 
H 6 HOH A 15 515 41 HOH HOH . 
H 6 HOH A 16 516 51 HOH HOH . 
H 6 HOH A 17 517 88 HOH HOH . 
H 6 HOH A 18 518 62 HOH HOH . 
H 6 HOH A 19 519 36 HOH HOH . 
H 6 HOH A 20 520 14 HOH HOH . 
H 6 HOH A 21 521 75 HOH HOH . 
H 6 HOH A 22 522 39 HOH HOH . 
H 6 HOH A 23 523 5 HOH HOH . 
H 6 HOH A 24 524 9 HOH HOH . 
H 6 HOH A 25 525 66 HOH HOH . 
H 6 HOH A 26 526 3 HOH HOH . 
H 6 HOH A 27 527 7 HOH HOH . 
H 6 HOH A 28 528 32 HOH HOH . 
H 6 HOH A 29 529 53 HOH HOH . 
H 6 HOH A 30 530 30 HOH HOH . 
H 6 HOH A 31 531 1 HOH HOH . 
H 6 HOH A 32 532 19 HOH HOH . 
H 6 HOH A 33 533 27 HOH HOH . 
H 6 HOH A 34 534 6 HOH HOH . 
H 6 HOH A 35 535 10 HOH HOH . 
H 6 HOH A 36 536 17 HOH HOH . 
H 6 HOH A 37 537 29 HOH HOH . 
H 6 HOH A 38 538 82 HOH HOH . 
H 6 HOH A 39 539 23 HOH HOH . 
H 6 HOH A 40 540 69 HOH HOH . 
H 6 HOH A 41 541 54 HOH HOH . 
H 6 HOH A 42 542 34 HOH HOH . 
H 6 HOH A 43 543 40 HOH HOH . 
H 6 HOH A 44 544 56 HOH HOH . 
H 6 HOH A 45 545 25 HOH HOH . 
H 6 HOH A 46 546 24 HOH HOH . 
H 6 HOH A 47 547 52 HOH HOH . 
H 6 HOH A 48 548 15 HOH HOH . 
H 6 HOH A 49 549 57 HOH HOH . 
H 6 HOH A 50 550 38 HOH HOH . 
H 6 HOH A 51 551 31 HOH HOH . 
H 6 HOH A 52 552 46 HOH HOH . 
H 6 HOH A 53 553 65 HOH HOH . 
H 6 HOH A 54 554 12 HOH HOH . 
H 6 HOH A 55 555 59 HOH HOH . 
H 6 HOH A 56 556 35 HOH HOH . 
H 6 HOH A 57 557 33 HOH HOH . 
H 6 HOH A 58 558 43 HOH HOH . 
H 6 HOH A 59 559 11 HOH HOH . 
H 6 HOH A 60 560 2 HOH HOH . 
H 6 HOH A 61 561 98 HOH HOH . 
H 6 HOH A 62 562 83 HOH HOH . 
H 6 HOH A 63 563 13 HOH HOH . 
H 6 HOH A 64 564 93 HOH HOH . 
H 6 HOH A 65 565 20 HOH HOH . 
H 6 HOH A 66 566 60 HOH HOH . 
H 6 HOH A 67 567 72 HOH HOH . 
H 6 HOH A 68 568 26 HOH HOH . 
H 6 HOH A 69 569 49 HOH HOH . 
H 6 HOH A 70 570 45 HOH HOH . 
H 6 HOH A 71 571 28 HOH HOH . 
H 6 HOH A 72 572 47 HOH HOH . 
H 6 HOH A 73 573 68 HOH HOH . 
H 6 HOH A 74 574 64 HOH HOH . 
H 6 HOH A 75 575 63 HOH HOH . 
H 6 HOH A 76 576 61 HOH HOH . 
H 6 HOH A 77 577 86 HOH HOH . 
H 6 HOH A 78 578 87 HOH HOH . 
H 6 HOH A 79 579 84 HOH HOH . 
H 6 HOH A 80 580 95 HOH HOH . 
H 6 HOH A 81 581 91 HOH HOH . 
H 6 HOH A 82 582 76 HOH HOH . 
H 6 HOH A 83 583 80 HOH HOH . 
H 6 HOH A 84 584 97 HOH HOH . 
H 6 HOH A 85 585 78 HOH HOH . 
H 6 HOH A 86 586 74 HOH HOH . 
H 6 HOH A 87 587 58 HOH HOH . 
H 6 HOH A 88 588 90 HOH HOH . 
H 6 HOH A 89 589 81 HOH HOH . 
H 6 HOH A 90 590 37 HOH HOH . 
H 6 HOH A 91 591 92 HOH HOH . 
H 6 HOH A 92 592 42 HOH HOH . 
H 6 HOH A 93 593 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 0.118 -12.131 13.075 1 21.43 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . C 3 0.185 -10.728 13.016 1 26.74 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . C 3 1.339 -12.79 12.423 1 23.31 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . C 3 1.587 -12.174 11.184 1 21.94 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . C 3 2.57 -12.631 13.303 1 24.65 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . C 3 3.636 -13.308 12.679 1 29.12 ? O3 GOL 402 A 1 
HETATM 7 H H11 GOL . . . C 3 -0.786 -12.47 12.57 1 25.72 ? H11 GOL 402 A 1 
HETATM 8 H H12 GOL . . . C 3 0.054 -12.444 14.117 1 25.72 ? H12 GOL 402 A 1 
HETATM 9 H HO1 GOL . . . C 3 -0.64 -10.346 13.382 1 32.08 ? HO1 GOL 402 A 1 
HETATM 10 H H2 GOL . . . C 3 1.137 -13.852 12.282 1 27.97 ? H2 GOL 402 A 1 
HETATM 11 H HO2 GOL . . . C 3 1.787 -11.225 11.325 1 26.33 ? HO2 GOL 402 A 1 
HETATM 12 H H31 GOL . . . C 3 2.383 -13.055 14.289 1 29.58 ? H31 GOL 402 A 1 
HETATM 13 H H32 GOL . . . C 3 2.814 -11.575 13.419 1 29.58 ? H32 GOL 402 A 1 
HETATM 14 H HO3 GOL . . . C 3 4.078 -12.706 12.044 1 34.94 ? HO3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#