data_5CQK # _model_server_result.job_id mqrbS-uLA2_Y0cIk6lwHAw _model_server_result.datetime_utc '2025-02-16 22:29:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cqk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5CQK # _exptl.entry_id 5CQK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CQK _cell.length_a 50.63 _cell.length_b 54.04 _cell.length_c 66.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CQK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 60 A HIS 253 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc2 A OD1 ASP 67 A ASP 260 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc3 A SG CYS 91 A CYS 284 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc4 A SG CYS 96 A CYS 289 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 A O ASP 121 A ASP 314 1_555 G NA NA . A NA 406 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc6 B ZN ZN . A ZN 401 1_555 H O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 E O1 PGE . A PGE 404 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc8 E O2 PGE . A PGE 404 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc9 F O4 PGE . A PGE 405 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 250 n n C1 C2 PGE sing 251 n n C1 H1 PGE sing 252 n n C1 H12 PGE sing 253 n n O1 HO1 PGE sing 254 n n C2 O2 PGE sing 255 n n C2 H2 PGE sing 256 n n C2 H22 PGE sing 257 n n O2 C3 PGE sing 258 n n C3 C4 PGE sing 259 n n C3 H3 PGE sing 260 n n C3 H32 PGE sing 261 n n C4 O3 PGE sing 262 n n C4 H4 PGE sing 263 n n C4 H42 PGE sing 264 n n O4 C6 PGE sing 265 n n O4 HO4 PGE sing 266 n n C6 C5 PGE sing 267 n n C6 H6 PGE sing 268 n n C6 H62 PGE sing 269 n n C5 O3 PGE sing 270 n n C5 H5 PGE sing 271 n n C5 H52 PGE sing 272 n n # _atom_sites.entry_id 5CQK _atom_sites.fract_transf_matrix[1][1] 0.019751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 2 ZN ZN . C 3 GOL A 1 402 1 GOL GOL . D 3 GOL A 1 403 3 GOL GOL . E 4 PGE A 1 404 1 PGE PGE . F 4 PGE A 1 405 2 PGE PGE . G 5 NA A 1 406 1 NA NA . H 6 HOH A 1 501 55 HOH HOH . H 6 HOH A 2 502 18 HOH HOH . H 6 HOH A 3 503 77 HOH HOH . H 6 HOH A 4 504 22 HOH HOH . H 6 HOH A 5 505 67 HOH HOH . H 6 HOH A 6 506 89 HOH HOH . H 6 HOH A 7 507 70 HOH HOH . H 6 HOH A 8 508 85 HOH HOH . H 6 HOH A 9 509 8 HOH HOH . H 6 HOH A 10 510 50 HOH HOH . H 6 HOH A 11 511 21 HOH HOH . H 6 HOH A 12 512 48 HOH HOH . H 6 HOH A 13 513 16 HOH HOH . H 6 HOH A 14 514 4 HOH HOH . H 6 HOH A 15 515 41 HOH HOH . H 6 HOH A 16 516 51 HOH HOH . H 6 HOH A 17 517 88 HOH HOH . H 6 HOH A 18 518 62 HOH HOH . H 6 HOH A 19 519 36 HOH HOH . H 6 HOH A 20 520 14 HOH HOH . H 6 HOH A 21 521 75 HOH HOH . H 6 HOH A 22 522 39 HOH HOH . H 6 HOH A 23 523 5 HOH HOH . H 6 HOH A 24 524 9 HOH HOH . H 6 HOH A 25 525 66 HOH HOH . H 6 HOH A 26 526 3 HOH HOH . H 6 HOH A 27 527 7 HOH HOH . H 6 HOH A 28 528 32 HOH HOH . H 6 HOH A 29 529 53 HOH HOH . H 6 HOH A 30 530 30 HOH HOH . H 6 HOH A 31 531 1 HOH HOH . H 6 HOH A 32 532 19 HOH HOH . H 6 HOH A 33 533 27 HOH HOH . H 6 HOH A 34 534 6 HOH HOH . H 6 HOH A 35 535 10 HOH HOH . H 6 HOH A 36 536 17 HOH HOH . H 6 HOH A 37 537 29 HOH HOH . H 6 HOH A 38 538 82 HOH HOH . H 6 HOH A 39 539 23 HOH HOH . H 6 HOH A 40 540 69 HOH HOH . H 6 HOH A 41 541 54 HOH HOH . H 6 HOH A 42 542 34 HOH HOH . H 6 HOH A 43 543 40 HOH HOH . H 6 HOH A 44 544 56 HOH HOH . H 6 HOH A 45 545 25 HOH HOH . H 6 HOH A 46 546 24 HOH HOH . H 6 HOH A 47 547 52 HOH HOH . H 6 HOH A 48 548 15 HOH HOH . H 6 HOH A 49 549 57 HOH HOH . H 6 HOH A 50 550 38 HOH HOH . H 6 HOH A 51 551 31 HOH HOH . H 6 HOH A 52 552 46 HOH HOH . H 6 HOH A 53 553 65 HOH HOH . H 6 HOH A 54 554 12 HOH HOH . H 6 HOH A 55 555 59 HOH HOH . H 6 HOH A 56 556 35 HOH HOH . H 6 HOH A 57 557 33 HOH HOH . H 6 HOH A 58 558 43 HOH HOH . H 6 HOH A 59 559 11 HOH HOH . H 6 HOH A 60 560 2 HOH HOH . H 6 HOH A 61 561 98 HOH HOH . H 6 HOH A 62 562 83 HOH HOH . H 6 HOH A 63 563 13 HOH HOH . H 6 HOH A 64 564 93 HOH HOH . H 6 HOH A 65 565 20 HOH HOH . H 6 HOH A 66 566 60 HOH HOH . H 6 HOH A 67 567 72 HOH HOH . H 6 HOH A 68 568 26 HOH HOH . H 6 HOH A 69 569 49 HOH HOH . H 6 HOH A 70 570 45 HOH HOH . H 6 HOH A 71 571 28 HOH HOH . H 6 HOH A 72 572 47 HOH HOH . H 6 HOH A 73 573 68 HOH HOH . H 6 HOH A 74 574 64 HOH HOH . H 6 HOH A 75 575 63 HOH HOH . H 6 HOH A 76 576 61 HOH HOH . H 6 HOH A 77 577 86 HOH HOH . H 6 HOH A 78 578 87 HOH HOH . H 6 HOH A 79 579 84 HOH HOH . H 6 HOH A 80 580 95 HOH HOH . H 6 HOH A 81 581 91 HOH HOH . H 6 HOH A 82 582 76 HOH HOH . H 6 HOH A 83 583 80 HOH HOH . H 6 HOH A 84 584 97 HOH HOH . H 6 HOH A 85 585 78 HOH HOH . H 6 HOH A 86 586 74 HOH HOH . H 6 HOH A 87 587 58 HOH HOH . H 6 HOH A 88 588 90 HOH HOH . H 6 HOH A 89 589 81 HOH HOH . H 6 HOH A 90 590 37 HOH HOH . H 6 HOH A 91 591 92 HOH HOH . H 6 HOH A 92 592 42 HOH HOH . H 6 HOH A 93 593 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . F 4 2.62 1.003 18.335 1 39.45 ? C1 PGE 405 A 1 HETATM 2 O O1 PGE . . . F 4 3.547 0.152 18.957 1 47.86 ? O1 PGE 405 A 1 HETATM 3 C C2 PGE . . . F 4 3.261 1.48 17.04 1 38.69 ? C2 PGE 405 A 1 HETATM 4 O O2 PGE . . . F 4 2.463 2.502 16.481 1 43.29 ? O2 PGE 405 A 1 HETATM 5 C C3 PGE . . . F 4 2.971 3.824 16.574 1 39.77 ? C3 PGE 405 A 1 HETATM 6 C C4 PGE . . . F 4 2.562 4.593 15.308 1 38.45 ? C4 PGE 405 A 1 HETATM 7 O O4 PGE . . . F 4 -0.807 5.226 12.386 1 37.35 ? O4 PGE 405 A 1 HETATM 8 C C6 PGE . . . F 4 -0.658 4.439 13.531 1 34.03 ? C6 PGE 405 A 1 HETATM 9 C C5 PGE . . . F 4 0.843 4.431 13.771 1 37.1 ? C5 PGE 405 A 1 HETATM 10 O O3 PGE . . . F 4 1.19 4.36 15.11 1 43.76 ? O3 PGE 405 A 1 HETATM 11 H H1 PGE . . . F 4 2.429 1.761 18.909 1 47.34 ? H1 PGE 405 A 1 HETATM 12 H H12 PGE . . . F 4 1.803 0.518 18.141 1 47.34 ? H12 PGE 405 A 1 HETATM 13 H HO1 PGE . . . F 4 3.986 -0.271 18.364 1 57.43 ? HO1 PGE 405 A 1 HETATM 14 H H2 PGE . . . F 4 4.148 1.826 17.225 1 46.42 ? H2 PGE 405 A 1 HETATM 15 H H22 PGE . . . F 4 3.324 0.74 16.417 1 46.42 ? H22 PGE 405 A 1 HETATM 16 H H3 PGE . . . F 4 3.938 3.798 16.642 1 47.72 ? H3 PGE 405 A 1 HETATM 17 H H32 PGE . . . F 4 2.6 4.262 17.356 1 47.72 ? H32 PGE 405 A 1 HETATM 18 H H4 PGE . . . F 4 3.066 4.268 14.545 1 46.14 ? H4 PGE 405 A 1 HETATM 19 H H42 PGE . . . F 4 2.722 5.542 15.43 1 46.14 ? H42 PGE 405 A 1 HETATM 20 H HO4 PGE . . . F 4 -1.464 5.756 12.49 1 44.82 ? HO4 PGE 405 A 1 HETATM 21 H H6 PGE . . . F 4 -0.982 3.539 13.37 1 40.84 ? H6 PGE 405 A 1 HETATM 22 H H62 PGE . . . F 4 -1.121 4.84 14.283 1 40.84 ? H62 PGE 405 A 1 HETATM 23 H H5 PGE . . . F 4 1.221 5.242 13.395 1 44.52 ? H5 PGE 405 A 1 HETATM 24 H H52 PGE . . . F 4 1.226 3.668 13.311 1 44.52 ? H52 PGE 405 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #