data_5CQZ
#
_model_server_result.job_id            11bNXlW4-G2NCsRivQ0DJQ 
_model_server_result.datetime_utc      '2024-11-15 16:04:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cqz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":601}' 
#
_entry.id    5CQZ 
#
_exptl.entry_id    5CQZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.29 
_cell.angle_gamma         90 
_cell.entry_id            5CQZ 
_cell.length_a            143.89 
_cell.length_b            121.98 
_cell.length_c            90.15 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CQZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -143.89 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 71 A ASP 52 1_555 L MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc2 A OD2 ASP 71 A ASP 52 1_555 L MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc3 A O ASP 73 A ASP 54 1_555 L MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc4 A OD1 ASP 370 A ASP 351 1_555 L MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc5 E O3 SO4 . A SO4 603 1_555 L MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc6 B OD1 ASP 71 B ASP 52 1_555 U MG MG . B MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc7 B OD2 ASP 71 B ASP 52 1_555 U MG MG . B MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc8 B O ASP 73 B ASP 54 1_555 U MG MG . B MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc9 B OD1 ASP 370 B ASP 351 1_555 U MG MG . B MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc10 Q O1 SO4 . B SO4 603 1_555 U MG MG . B MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc11 U MG MG . B MG 607 1_555 Y O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 160 n n 
C1 C2 GOL sing 161 n n 
C1 H11 GOL sing 162 n n 
C1 H12 GOL sing 163 n n 
O1 HO1 GOL sing 164 n n 
C2 O2 GOL sing 165 n n 
C2 C3 GOL sing 166 n n 
C2 H2 GOL sing 167 n n 
O2 HO2 GOL sing 168 n n 
C3 O3 GOL sing 169 n n 
C3 H31 GOL sing 170 n n 
C3 H32 GOL sing 171 n n 
O3 HO3 GOL sing 172 n n 
#
_atom_sites.entry_id                     5CQZ 
_atom_sites.fract_transf_matrix[1][1]    0.00695 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003137 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008198 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01217 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 601 1 GOL GOL . 
D 2 GOL A 1 602 4 GOL GOL . 
E 3 SO4 A 1 603 1 SO4 SO4 . 
F 3 SO4 A 1 604 4 SO4 SO4 . 
G 3 SO4 A 1 605 5 SO4 SO4 . 
H 3 SO4 A 1 606 6 SO4 SO4 . 
I 3 SO4 A 1 607 7 SO4 SO4 . 
J 3 SO4 A 1 608 8 SO4 SO4 . 
K 3 SO4 A 1 609 9 SO4 SO4 . 
L 4 MG A 1 610 1 MG MG . 
M 4 MG A 1 611 3 MG MG . 
N 5 53O A 1 612 1 53O DRG . 
O 2 GOL B 1 601 2 GOL GOL . 
P 2 GOL B 1 602 3 GOL GOL . 
Q 3 SO4 B 1 603 2 SO4 SO4 . 
R 3 SO4 B 1 604 3 SO4 SO4 . 
S 3 SO4 B 1 605 10 SO4 SO4 . 
T 3 SO4 B 1 606 11 SO4 SO4 . 
U 4 MG B 1 607 2 MG MG . 
V 4 MG B 1 608 4 MG MG . 
W 5 53O B 1 609 2 53O DRG . 
X 6 HOH A 1 701 21 HOH HOH . 
X 6 HOH A 2 702 18 HOH HOH . 
X 6 HOH A 3 703 19 HOH HOH . 
X 6 HOH A 4 704 10 HOH HOH . 
X 6 HOH A 5 705 29 HOH HOH . 
X 6 HOH A 6 706 16 HOH HOH . 
X 6 HOH A 7 707 26 HOH HOH . 
X 6 HOH A 8 708 1 HOH HOH . 
X 6 HOH A 9 709 58 HOH HOH . 
X 6 HOH A 10 710 20 HOH HOH . 
X 6 HOH A 11 711 6 HOH HOH . 
X 6 HOH A 12 712 2 HOH HOH . 
X 6 HOH A 13 713 12 HOH HOH . 
X 6 HOH A 14 714 31 HOH HOH . 
X 6 HOH A 15 715 28 HOH HOH . 
X 6 HOH A 16 716 23 HOH HOH . 
X 6 HOH A 17 717 14 HOH HOH . 
X 6 HOH A 18 718 38 HOH HOH . 
X 6 HOH A 19 719 15 HOH HOH . 
X 6 HOH A 20 720 22 HOH HOH . 
X 6 HOH A 21 721 75 HOH HOH . 
X 6 HOH A 22 722 41 HOH HOH . 
X 6 HOH A 23 723 74 HOH HOH . 
X 6 HOH A 24 724 34 HOH HOH . 
X 6 HOH A 25 725 27 HOH HOH . 
X 6 HOH A 26 726 46 HOH HOH . 
X 6 HOH A 27 727 79 HOH HOH . 
X 6 HOH A 28 728 35 HOH HOH . 
X 6 HOH A 29 729 5 HOH HOH . 
X 6 HOH A 30 730 39 HOH HOH . 
X 6 HOH A 31 731 43 HOH HOH . 
X 6 HOH A 32 732 78 HOH HOH . 
X 6 HOH A 33 733 45 HOH HOH . 
X 6 HOH A 34 734 33 HOH HOH . 
X 6 HOH A 35 735 47 HOH HOH . 
X 6 HOH A 36 736 44 HOH HOH . 
X 6 HOH A 37 737 52 HOH HOH . 
X 6 HOH A 38 738 49 HOH HOH . 
X 6 HOH A 39 739 17 HOH HOH . 
X 6 HOH A 40 740 40 HOH HOH . 
X 6 HOH A 41 741 36 HOH HOH . 
X 6 HOH A 42 742 50 HOH HOH . 
X 6 HOH A 43 743 48 HOH HOH . 
X 6 HOH A 44 744 37 HOH HOH . 
Y 6 HOH B 1 701 11 HOH HOH . 
Y 6 HOH B 2 702 64 HOH HOH . 
Y 6 HOH B 3 703 3 HOH HOH . 
Y 6 HOH B 4 704 30 HOH HOH . 
Y 6 HOH B 5 705 13 HOH HOH . 
Y 6 HOH B 6 706 24 HOH HOH . 
Y 6 HOH B 7 707 80 HOH HOH . 
Y 6 HOH B 8 708 4 HOH HOH . 
Y 6 HOH B 9 709 9 HOH HOH . 
Y 6 HOH B 10 710 8 HOH HOH . 
Y 6 HOH B 11 711 69 HOH HOH . 
Y 6 HOH B 12 712 71 HOH HOH . 
Y 6 HOH B 13 713 32 HOH HOH . 
Y 6 HOH B 14 714 42 HOH HOH . 
Y 6 HOH B 15 715 56 HOH HOH . 
Y 6 HOH B 16 716 62 HOH HOH . 
Y 6 HOH B 17 717 63 HOH HOH . 
Y 6 HOH B 18 718 65 HOH HOH . 
Y 6 HOH B 19 719 25 HOH HOH . 
Y 6 HOH B 20 720 70 HOH HOH . 
Y 6 HOH B 21 721 7 HOH HOH . 
Y 6 HOH B 22 722 61 HOH HOH . 
Y 6 HOH B 23 723 57 HOH HOH . 
Y 6 HOH B 24 724 68 HOH HOH . 
Y 6 HOH B 25 725 73 HOH HOH . 
Y 6 HOH B 26 726 59 HOH HOH . 
Y 6 HOH B 27 727 51 HOH HOH . 
Y 6 HOH B 28 728 54 HOH HOH . 
Y 6 HOH B 29 729 55 HOH HOH . 
Y 6 HOH B 30 730 67 HOH HOH . 
Y 6 HOH B 31 731 76 HOH HOH . 
Y 6 HOH B 32 732 60 HOH HOH . 
Y 6 HOH B 33 733 77 HOH HOH . 
Y 6 HOH B 34 734 53 HOH HOH . 
Y 6 HOH B 35 735 66 HOH HOH . 
Y 6 HOH B 36 736 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . O 2 -42.623 -30.296 17.952 1 36.89 ? C1 GOL 601 B 1 
HETATM 2 O O1 GOL . . . O 2 -41.401 -30.093 17.273 1 39.63 ? O1 GOL 601 B 1 
HETATM 3 C C2 GOL . . . O 2 -42.306 -31.125 19.174 1 36.81 ? C2 GOL 601 B 1 
HETATM 4 O O2 GOL . . . O 2 -43.444 -31.878 19.507 1 39.47 ? O2 GOL 601 B 1 
HETATM 5 C C3 GOL . . . O 2 -41.163 -32.029 18.747 1 38.3 ? C3 GOL 601 B 1 
HETATM 6 O O3 GOL . . . O 2 -40.867 -32.973 19.74 1 41.68 ? O3 GOL 601 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#