data_5CQZ # _model_server_result.job_id Rdt4er_1VEzNj3koRz0lMg _model_server_result.datetime_utc '2024-11-15 15:50:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cqz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":612}' # _entry.id 5CQZ # _exptl.entry_id 5CQZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 220.269 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(biphenyl-3-yl)-1H-imidazole _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.29 _cell.angle_gamma 90 _cell.entry_id 5CQZ _cell.length_a 143.89 _cell.length_b 121.98 _cell.length_c 90.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CQZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -143.89 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 71 A ASP 52 1_555 L MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 A OD2 ASP 71 A ASP 52 1_555 L MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc3 A O ASP 73 A ASP 54 1_555 L MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc4 A OD1 ASP 370 A ASP 351 1_555 L MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc5 E O3 SO4 . A SO4 603 1_555 L MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc6 B OD1 ASP 71 B ASP 52 1_555 U MG MG . B MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc7 B OD2 ASP 71 B ASP 52 1_555 U MG MG . B MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc8 B O ASP 73 B ASP 54 1_555 U MG MG . B MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc9 B OD1 ASP 370 B ASP 351 1_555 U MG MG . B MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc10 Q O1 SO4 . B SO4 603 1_555 U MG MG . B MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc11 U MG MG . B MG 607 1_555 Y O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? # _chem_comp.formula 'C15 H12 N2' _chem_comp.formula_weight 220.269 _chem_comp.id 53O _chem_comp.mon_nstd_flag . _chem_comp.name 1-(biphenyl-3-yl)-1H-imidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD NAO 53O sing 1 n y CAD CAK 53O doub 2 n y NAO CAL 53O doub 3 n y CAK NBC 53O sing 4 n y CAL NBC 53O sing 5 n y NBC CAY 53O sing 6 n n CAV CAM 53O doub 7 n y CAV CAF 53O sing 8 n y CAM CAW 53O sing 9 n y CAN CAY 53O doub 10 n y CAN CAX 53O sing 11 n y CAY CAI 53O sing 12 n y CAF CAB 53O doub 13 n y CAW CAX 53O sing 14 n n CAW CAG 53O doub 15 n y CAX CAH 53O doub 16 n y CAI CAC 53O doub 17 n y CAB CAG 53O sing 18 n y CAH CAC 53O sing 19 n y CAK H1 53O sing 20 n n CAD H2 53O sing 21 n n CAL H3 53O sing 22 n n CAN H4 53O sing 23 n n CAI H5 53O sing 24 n n CAC H6 53O sing 25 n n CAH H7 53O sing 26 n n CAM H8 53O sing 27 n n CAG H9 53O sing 28 n n CAB H10 53O sing 29 n n CAF H11 53O sing 30 n n CAV H12 53O sing 31 n n # _atom_sites.entry_id 5CQZ _atom_sites.fract_transf_matrix[1][1] 0.00695 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003137 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 601 1 GOL GOL . D 2 GOL A 1 602 4 GOL GOL . E 3 SO4 A 1 603 1 SO4 SO4 . F 3 SO4 A 1 604 4 SO4 SO4 . G 3 SO4 A 1 605 5 SO4 SO4 . H 3 SO4 A 1 606 6 SO4 SO4 . I 3 SO4 A 1 607 7 SO4 SO4 . J 3 SO4 A 1 608 8 SO4 SO4 . K 3 SO4 A 1 609 9 SO4 SO4 . L 4 MG A 1 610 1 MG MG . M 4 MG A 1 611 3 MG MG . N 5 53O A 1 612 1 53O DRG . O 2 GOL B 1 601 2 GOL GOL . P 2 GOL B 1 602 3 GOL GOL . Q 3 SO4 B 1 603 2 SO4 SO4 . R 3 SO4 B 1 604 3 SO4 SO4 . S 3 SO4 B 1 605 10 SO4 SO4 . T 3 SO4 B 1 606 11 SO4 SO4 . U 4 MG B 1 607 2 MG MG . V 4 MG B 1 608 4 MG MG . W 5 53O B 1 609 2 53O DRG . X 6 HOH A 1 701 21 HOH HOH . X 6 HOH A 2 702 18 HOH HOH . X 6 HOH A 3 703 19 HOH HOH . X 6 HOH A 4 704 10 HOH HOH . X 6 HOH A 5 705 29 HOH HOH . X 6 HOH A 6 706 16 HOH HOH . X 6 HOH A 7 707 26 HOH HOH . X 6 HOH A 8 708 1 HOH HOH . X 6 HOH A 9 709 58 HOH HOH . X 6 HOH A 10 710 20 HOH HOH . X 6 HOH A 11 711 6 HOH HOH . X 6 HOH A 12 712 2 HOH HOH . X 6 HOH A 13 713 12 HOH HOH . X 6 HOH A 14 714 31 HOH HOH . X 6 HOH A 15 715 28 HOH HOH . X 6 HOH A 16 716 23 HOH HOH . X 6 HOH A 17 717 14 HOH HOH . X 6 HOH A 18 718 38 HOH HOH . X 6 HOH A 19 719 15 HOH HOH . X 6 HOH A 20 720 22 HOH HOH . X 6 HOH A 21 721 75 HOH HOH . X 6 HOH A 22 722 41 HOH HOH . X 6 HOH A 23 723 74 HOH HOH . X 6 HOH A 24 724 34 HOH HOH . X 6 HOH A 25 725 27 HOH HOH . X 6 HOH A 26 726 46 HOH HOH . X 6 HOH A 27 727 79 HOH HOH . X 6 HOH A 28 728 35 HOH HOH . X 6 HOH A 29 729 5 HOH HOH . X 6 HOH A 30 730 39 HOH HOH . X 6 HOH A 31 731 43 HOH HOH . X 6 HOH A 32 732 78 HOH HOH . X 6 HOH A 33 733 45 HOH HOH . X 6 HOH A 34 734 33 HOH HOH . X 6 HOH A 35 735 47 HOH HOH . X 6 HOH A 36 736 44 HOH HOH . X 6 HOH A 37 737 52 HOH HOH . X 6 HOH A 38 738 49 HOH HOH . X 6 HOH A 39 739 17 HOH HOH . X 6 HOH A 40 740 40 HOH HOH . X 6 HOH A 41 741 36 HOH HOH . X 6 HOH A 42 742 50 HOH HOH . X 6 HOH A 43 743 48 HOH HOH . X 6 HOH A 44 744 37 HOH HOH . Y 6 HOH B 1 701 11 HOH HOH . Y 6 HOH B 2 702 64 HOH HOH . Y 6 HOH B 3 703 3 HOH HOH . Y 6 HOH B 4 704 30 HOH HOH . Y 6 HOH B 5 705 13 HOH HOH . Y 6 HOH B 6 706 24 HOH HOH . Y 6 HOH B 7 707 80 HOH HOH . Y 6 HOH B 8 708 4 HOH HOH . Y 6 HOH B 9 709 9 HOH HOH . Y 6 HOH B 10 710 8 HOH HOH . Y 6 HOH B 11 711 69 HOH HOH . Y 6 HOH B 12 712 71 HOH HOH . Y 6 HOH B 13 713 32 HOH HOH . Y 6 HOH B 14 714 42 HOH HOH . Y 6 HOH B 15 715 56 HOH HOH . Y 6 HOH B 16 716 62 HOH HOH . Y 6 HOH B 17 717 63 HOH HOH . Y 6 HOH B 18 718 65 HOH HOH . Y 6 HOH B 19 719 25 HOH HOH . Y 6 HOH B 20 720 70 HOH HOH . Y 6 HOH B 21 721 7 HOH HOH . Y 6 HOH B 22 722 61 HOH HOH . Y 6 HOH B 23 723 57 HOH HOH . Y 6 HOH B 24 724 68 HOH HOH . Y 6 HOH B 25 725 73 HOH HOH . Y 6 HOH B 26 726 59 HOH HOH . Y 6 HOH B 27 727 51 HOH HOH . Y 6 HOH B 28 728 54 HOH HOH . Y 6 HOH B 29 729 55 HOH HOH . Y 6 HOH B 30 730 67 HOH HOH . Y 6 HOH B 31 731 76 HOH HOH . Y 6 HOH B 32 732 60 HOH HOH . Y 6 HOH B 33 733 77 HOH HOH . Y 6 HOH B 34 734 53 HOH HOH . Y 6 HOH B 35 735 66 HOH HOH . Y 6 HOH B 36 736 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAK 53O . . . N 5 -35.978 -21.153 4.33 1 69.15 ? CAK 53O 612 A 1 HETATM 2 C CAD 53O . . . N 5 -35.013 -20.86 3.454 1 64.53 ? CAD 53O 612 A 1 HETATM 3 N NAO 53O . . . N 5 -33.901 -21.444 3.881 1 62.65 ? NAO 53O 612 A 1 HETATM 4 C CAL 53O . . . N 5 -34.181 -22.085 5.021 1 66.52 ? CAL 53O 612 A 1 HETATM 5 N NBC 53O . . . N 5 -35.468 -21.875 5.319 1 68.16 ? NBC 53O 612 A 1 HETATM 6 C CAY 53O . . . N 5 -36.216 -22.362 6.312 1 69.79 ? CAY 53O 612 A 1 HETATM 7 C CAN 53O . . . N 5 -37.588 -22.149 6.212 1 68.59 ? CAN 53O 612 A 1 HETATM 8 C CAI 53O . . . N 5 -35.727 -23.121 7.369 1 67.55 ? CAI 53O 612 A 1 HETATM 9 C CAC 53O . . . N 5 -36.598 -23.64 8.336 1 67.69 ? CAC 53O 612 A 1 HETATM 10 C CAH 53O . . . N 5 -37.973 -23.416 8.221 1 68.35 ? CAH 53O 612 A 1 HETATM 11 C CAX 53O . . . N 5 -38.46 -22.699 7.13 1 62.29 ? CAX 53O 612 A 1 HETATM 12 C CAW 53O . . . N 5 -39.798 -22.408 6.949 1 62.57 ? CAW 53O 612 A 1 HETATM 13 C CAM 53O . . . N 5 -40.134 -21.417 6.028 1 65.4 ? CAM 53O 612 A 1 HETATM 14 C CAG 53O . . . N 5 -40.784 -23.012 7.71 1 62.06 ? CAG 53O 612 A 1 HETATM 15 C CAB 53O . . . N 5 -42.113 -22.655 7.468 1 68.71 ? CAB 53O 612 A 1 HETATM 16 C CAF 53O . . . N 5 -42.447 -21.661 6.537 1 65.72 ? CAF 53O 612 A 1 HETATM 17 C CAV 53O . . . N 5 -41.452 -21.032 5.806 1 59.47 ? CAV 53O 612 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 17 #