data_5CR1 # _model_server_result.job_id wcwQ5s889gqm3AIjhxrgXQ _model_server_result.datetime_utc '2024-10-12 22:13:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5CR1 # _exptl.entry_id 5CR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 776.87 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,3',5'-TETRAIODO-L-THYRONINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CR1 _cell.length_a 42.536 _cell.length_b 85.633 _cell.length_c 63.826 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 42.536 85.633 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H11 I4 N O4' _chem_comp.formula_weight 776.87 _chem_comp.id T44 _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,3',5'-TETRAIODO-L-THYRONINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 T44 doub 301 n y C1 C6 T44 sing 302 n y C1 C7 T44 sing 303 n n C2 C3 T44 sing 304 n y C2 H1 T44 sing 305 n n C3 C4 T44 doub 306 n y C3 I3 T44 sing 307 n n C4 C5 T44 sing 308 n y C4 O4 T44 sing 309 n n C5 C6 T44 doub 310 n y C5 I5 T44 sing 311 n n C6 H6 T44 sing 312 n n C7 CA T44 sing 313 n n C7 H71 T44 sing 314 n n C7 H72 T44 sing 315 n n CA C T44 sing 316 n n CA N T44 sing 317 n n CA HA T44 sing 318 n n C O T44 doub 319 n n C OXT T44 sing 320 n n C1' C2' T44 doub 321 n y C1' C6' T44 sing 322 n y C1' O4 T44 sing 323 n n C2' C3' T44 sing 324 n y C2' H2' T44 sing 325 n n C3' C4' T44 doub 326 n y C3' I3' T44 sing 327 n n C4' C5' T44 sing 328 n y C4' O4' T44 sing 329 n n C5' C6' T44 doub 330 n y C5' I5' T44 sing 331 n n C6' H6' T44 sing 332 n n N H T44 sing 333 n n N H2 T44 sing 334 n n O4' HO4' T44 sing 335 n n OXT HXT T44 sing 336 n n # _atom_sites.entry_id 5CR1 _atom_sites.fract_transf_matrix[1][1] 0.023509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 T44 A 1 201 1 T44 T44 . D 3 STL B 1 201 1 STL R4G . E 4 HOH A 1 301 171 HOH HOH . E 4 HOH A 2 302 34 HOH HOH . E 4 HOH A 3 303 58 HOH HOH . E 4 HOH A 4 304 30 HOH HOH . E 4 HOH A 5 305 24 HOH HOH . E 4 HOH A 6 306 146 HOH HOH . E 4 HOH A 7 307 11 HOH HOH . E 4 HOH A 8 308 104 HOH HOH . E 4 HOH A 9 309 76 HOH HOH . E 4 HOH A 10 310 13 HOH HOH . E 4 HOH A 11 311 33 HOH HOH . E 4 HOH A 12 312 63 HOH HOH . E 4 HOH A 13 313 137 HOH HOH . E 4 HOH A 14 314 83 HOH HOH . E 4 HOH A 15 315 86 HOH HOH . E 4 HOH A 16 316 5 HOH HOH . E 4 HOH A 17 317 166 HOH HOH . E 4 HOH A 18 318 40 HOH HOH . E 4 HOH A 19 319 69 HOH HOH . E 4 HOH A 20 320 152 HOH HOH . E 4 HOH A 21 321 133 HOH HOH . E 4 HOH A 22 322 35 HOH HOH . E 4 HOH A 23 323 32 HOH HOH . E 4 HOH A 24 324 71 HOH HOH . E 4 HOH A 25 325 66 HOH HOH . E 4 HOH A 26 326 17 HOH HOH . E 4 HOH A 27 327 7 HOH HOH . E 4 HOH A 28 328 26 HOH HOH . E 4 HOH A 29 329 23 HOH HOH . E 4 HOH A 30 330 223 HOH HOH . E 4 HOH A 31 331 98 HOH HOH . E 4 HOH A 32 332 57 HOH HOH . E 4 HOH A 33 333 96 HOH HOH . E 4 HOH A 34 334 18 HOH HOH . E 4 HOH A 35 335 99 HOH HOH . E 4 HOH A 36 336 53 HOH HOH . E 4 HOH A 37 337 60 HOH HOH . E 4 HOH A 38 338 29 HOH HOH . E 4 HOH A 39 339 111 HOH HOH . E 4 HOH A 40 340 122 HOH HOH . E 4 HOH A 41 341 115 HOH HOH . E 4 HOH A 42 342 52 HOH HOH . E 4 HOH A 43 343 179 HOH HOH . E 4 HOH A 44 344 74 HOH HOH . E 4 HOH A 45 345 72 HOH HOH . E 4 HOH A 46 346 82 HOH HOH . E 4 HOH A 47 347 92 HOH HOH . E 4 HOH A 48 348 37 HOH HOH . E 4 HOH A 49 349 141 HOH HOH . E 4 HOH A 50 350 59 HOH HOH . E 4 HOH A 51 351 19 HOH HOH . E 4 HOH A 52 352 15 HOH HOH . E 4 HOH A 53 353 43 HOH HOH . E 4 HOH A 54 354 31 HOH HOH . E 4 HOH A 55 355 75 HOH HOH . E 4 HOH A 56 356 88 HOH HOH . E 4 HOH A 57 357 73 HOH HOH . E 4 HOH A 58 358 145 HOH HOH . E 4 HOH A 59 359 56 HOH HOH . E 4 HOH A 60 360 27 HOH HOH . E 4 HOH A 61 361 102 HOH HOH . E 4 HOH A 62 362 54 HOH HOH . E 4 HOH A 63 363 129 HOH HOH . E 4 HOH A 64 364 192 HOH HOH . E 4 HOH A 65 365 107 HOH HOH . E 4 HOH A 66 366 173 HOH HOH . E 4 HOH A 67 367 36 HOH HOH . E 4 HOH A 68 368 49 HOH HOH . E 4 HOH A 69 369 163 HOH HOH . E 4 HOH A 70 370 169 HOH HOH . E 4 HOH A 71 371 172 HOH HOH . E 4 HOH A 72 372 70 HOH HOH . E 4 HOH A 73 373 65 HOH HOH . E 4 HOH A 74 374 44 HOH HOH . E 4 HOH A 75 375 79 HOH HOH . E 4 HOH A 76 376 158 HOH HOH . E 4 HOH A 77 377 194 HOH HOH . E 4 HOH A 78 378 160 HOH HOH . E 4 HOH A 79 379 168 HOH HOH . E 4 HOH A 80 380 182 HOH HOH . E 4 HOH A 81 381 130 HOH HOH . E 4 HOH A 82 382 85 HOH HOH . E 4 HOH A 83 383 154 HOH HOH . E 4 HOH A 84 384 93 HOH HOH . E 4 HOH A 85 385 161 HOH HOH . E 4 HOH A 86 386 114 HOH HOH . E 4 HOH A 87 387 109 HOH HOH . E 4 HOH A 88 388 127 HOH HOH . F 4 HOH B 1 301 100 HOH HOH . F 4 HOH B 2 302 103 HOH HOH . F 4 HOH B 3 303 125 HOH HOH . F 4 HOH B 4 304 244 HOH HOH . F 4 HOH B 5 305 176 HOH HOH . F 4 HOH B 6 306 95 HOH HOH . F 4 HOH B 7 307 131 HOH HOH . F 4 HOH B 8 308 170 HOH HOH . F 4 HOH B 9 309 116 HOH HOH . F 4 HOH B 10 310 14 HOH HOH . F 4 HOH B 11 311 159 HOH HOH . F 4 HOH B 12 312 165 HOH HOH . F 4 HOH B 13 313 16 HOH HOH . F 4 HOH B 14 314 106 HOH HOH . F 4 HOH B 15 315 81 HOH HOH . F 4 HOH B 16 316 105 HOH HOH . F 4 HOH B 17 317 97 HOH HOH . F 4 HOH B 18 318 20 HOH HOH . F 4 HOH B 19 319 120 HOH HOH . F 4 HOH B 20 320 12 HOH HOH . F 4 HOH B 21 321 55 HOH HOH . F 4 HOH B 22 322 119 HOH HOH . F 4 HOH B 23 323 144 HOH HOH . F 4 HOH B 24 324 123 HOH HOH . F 4 HOH B 25 325 51 HOH HOH . F 4 HOH B 26 326 39 HOH HOH . F 4 HOH B 27 327 28 HOH HOH . F 4 HOH B 28 328 147 HOH HOH . F 4 HOH B 29 329 62 HOH HOH . F 4 HOH B 30 330 38 HOH HOH . F 4 HOH B 31 331 77 HOH HOH . F 4 HOH B 32 332 45 HOH HOH . F 4 HOH B 33 333 25 HOH HOH . F 4 HOH B 34 334 8 HOH HOH . F 4 HOH B 35 335 87 HOH HOH . F 4 HOH B 36 336 22 HOH HOH . F 4 HOH B 37 337 150 HOH HOH . F 4 HOH B 38 338 3 HOH HOH . F 4 HOH B 39 339 84 HOH HOH . F 4 HOH B 40 340 177 HOH HOH . F 4 HOH B 41 341 110 HOH HOH . F 4 HOH B 42 342 136 HOH HOH . F 4 HOH B 43 343 48 HOH HOH . F 4 HOH B 44 344 50 HOH HOH . F 4 HOH B 45 345 157 HOH HOH . F 4 HOH B 46 346 204 HOH HOH . F 4 HOH B 47 347 108 HOH HOH . F 4 HOH B 48 348 41 HOH HOH . F 4 HOH B 49 349 68 HOH HOH . F 4 HOH B 50 350 208 HOH HOH . F 4 HOH B 51 351 94 HOH HOH . F 4 HOH B 52 352 10 HOH HOH . F 4 HOH B 53 353 190 HOH HOH . F 4 HOH B 54 354 101 HOH HOH . F 4 HOH B 55 355 80 HOH HOH . F 4 HOH B 56 356 9 HOH HOH . F 4 HOH B 57 357 217 HOH HOH . F 4 HOH B 58 358 124 HOH HOH . F 4 HOH B 59 359 67 HOH HOH . F 4 HOH B 60 360 4 HOH HOH . F 4 HOH B 61 361 112 HOH HOH . F 4 HOH B 62 362 138 HOH HOH . F 4 HOH B 63 363 78 HOH HOH . F 4 HOH B 64 364 184 HOH HOH . F 4 HOH B 65 365 188 HOH HOH . F 4 HOH B 66 366 117 HOH HOH . F 4 HOH B 67 367 236 HOH HOH . F 4 HOH B 68 368 90 HOH HOH . F 4 HOH B 69 369 149 HOH HOH . F 4 HOH B 70 370 61 HOH HOH . F 4 HOH B 71 371 121 HOH HOH . F 4 HOH B 72 372 132 HOH HOH . F 4 HOH B 73 373 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T44 . . . C 2 20.12 43.452 32.169 0.4 63.89 ? C1 T44 201 A 1 HETATM 2 C C2 T44 . . . C 2 19.306 42.622 32.925 0.4 59.28 ? C2 T44 201 A 1 HETATM 3 C C3 T44 . . . C 2 19.798 42.061 34.09 0.4 55.73 ? C3 T44 201 A 1 HETATM 4 C C4 T44 . . . C 2 21.089 42.327 34.498 0.4 48.81 ? C4 T44 201 A 1 HETATM 5 C C5 T44 . . . C 2 21.903 43.154 33.747 0.4 50.42 ? C5 T44 201 A 1 HETATM 6 C C6 T44 . . . C 2 21.418 43.719 32.578 0.4 59.17 ? C6 T44 201 A 1 HETATM 7 C C7 T44 . . . C 2 19.545 44.047 30.896 0.4 67.67 ? C7 T44 201 A 1 HETATM 8 C CA T44 . . . C 2 18.896 42.978 29.999 0.4 62.16 ? CA T44 201 A 1 HETATM 9 C C T44 . . . C 2 18.234 43.564 28.689 0.4 56.96 ? C T44 201 A 1 HETATM 10 C C1' T44 . . . C 2 21.474 42.259 36.975 0.4 39.44 ? C1' T44 201 A 1 HETATM 11 C C2' T44 . . . C 2 20.814 43.436 37.293 0.4 37.51 ? C2' T44 201 A 1 HETATM 12 C C3' T44 . . . C 2 20.662 43.795 38.62 0.4 42.76 ? C3' T44 201 A 1 HETATM 13 C C4' T44 . . . C 2 21.163 42.988 39.621 0.4 39.02 ? C4' T44 201 A 1 HETATM 14 C C5' T44 . . . C 2 21.821 41.814 39.308 0.4 44.78 ? C5' T44 201 A 1 HETATM 15 C C6' T44 . . . C 2 21.977 41.447 37.981 0.4 43.83 ? C6' T44 201 A 1 HETATM 16 N N T44 . . . C 2 17.92 42.04 30.621 0.4 54.09 ? N T44 201 A 1 HETATM 17 O O4 T44 . . . C 2 21.681 41.805 35.668 0.4 43.85 ? O4 T44 201 A 1 HETATM 18 O O4' T44 . . . C 2 20.991 43.379 40.881 0.4 13.29 ? O4' T44 201 A 1 HETATM 19 O O T44 . . . C 2 17.839 42.747 27.845 0.4 53.06 ? O T44 201 A 1 HETATM 20 O OXT T44 . . . C 2 18.16 44.799 28.604 0.4 47.88 ? OXT T44 201 A 1 HETATM 21 I I3 T44 . . . C 2 18.532 40.84 35.16 0.4 27.4 ? I3 T44 201 A 1 HETATM 22 I I3' T44 . . . C 2 19.672 45.559 39.009 0.4 129.71 ? I3' T44 201 A 1 HETATM 23 I I5 T44 . . . C 2 23.841 43.608 34.275 0.4 29.32 ? I5 T44 201 A 1 HETATM 24 I I5' T44 . . . C 2 22.602 40.543 40.729 0.4 105.72 ? I5' T44 201 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #