data_5CRA # _model_server_result.job_id PUwrth8QaHnu6M06P1F9aA _model_server_result.datetime_utc '2025-03-07 00:18:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cra # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":101}' # _entry.id 5CRA # _exptl.entry_id 5CRA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 117.146 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'METHYL 4-AMINOBUTANOATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CRA _cell.length_a 64.192 _cell.length_b 64.192 _cell.length_c 120.717 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,P,Q 1 1 C,D,L,M,N,O,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 118 A CYS 118 1_555 K CB GVE . D GVE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? covale ? covale2 B C GLY 75 D GLY 75 1_555 K N GVE . D GVE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.272 ? covale ? covale3 C SG CYS 118 B CYS 118 1_555 O CB GVE . C GVE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale4 D C GLY 75 C GLY 75 1_555 O N GVE . C GVE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? # _chem_comp.formula 'C5 H11 N O2' _chem_comp.formula_weight 117.146 _chem_comp.id GVE _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL 4-AMINOBUTANOATE' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 GVE sing 129 n n N H GVE sing 130 n n N H2 GVE sing 131 n n C1 CB GVE sing 132 n n C1 HA1 GVE sing 133 n n C1 HA2 GVE sing 134 n n CB CG GVE sing 135 n n CB HB1 GVE sing 136 n n CB HB2 GVE sing 137 n n CG C GVE sing 138 n n CG HG1 GVE sing 139 n n CG HG2 GVE sing 140 n n C OXT GVE sing 141 n n C O GVE doub 142 n n OXT CH3 GVE sing 143 n n CH3 HH31 GVE sing 144 n n CH3 HH32 GVE sing 145 n n CH3 HH33 GVE sing 146 n n # _atom_sites.entry_id 5CRA _atom_sites.fract_transf_matrix[1][1] 0.015578 _atom_sites.fract_transf_matrix[1][2] 0.008994 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 201 1 SO4 SO4 . F 3 SO4 A 1 202 3 SO4 SO4 . G 3 SO4 A 1 203 4 SO4 SO4 . H 3 SO4 A 1 204 5 SO4 SO4 . I 3 SO4 A 1 205 6 SO4 SO4 . J 3 SO4 A 1 206 9 SO4 SO4 . K 4 GVE D 1 101 76 GVE GVE . L 3 SO4 B 1 201 2 SO4 SO4 . M 3 SO4 B 1 202 7 SO4 SO4 . N 3 SO4 B 1 203 8 SO4 SO4 . O 4 GVE C 1 101 76 GVE GVE . P 5 HOH A 1 301 18 HOH HOH . P 5 HOH A 2 302 27 HOH HOH . P 5 HOH A 3 303 16 HOH HOH . P 5 HOH A 4 304 24 HOH HOH . P 5 HOH A 5 305 19 HOH HOH . P 5 HOH A 6 306 22 HOH HOH . P 5 HOH A 7 307 14 HOH HOH . P 5 HOH A 8 308 2 HOH HOH . P 5 HOH A 9 309 20 HOH HOH . P 5 HOH A 10 310 15 HOH HOH . P 5 HOH A 11 311 25 HOH HOH . P 5 HOH A 12 312 1 HOH HOH . P 5 HOH A 13 313 32 HOH HOH . P 5 HOH A 14 314 26 HOH HOH . P 5 HOH A 15 315 3 HOH HOH . P 5 HOH A 16 316 12 HOH HOH . P 5 HOH A 17 317 17 HOH HOH . P 5 HOH A 18 318 30 HOH HOH . P 5 HOH A 19 319 13 HOH HOH . Q 5 HOH D 1 201 23 HOH HOH . Q 5 HOH D 2 202 21 HOH HOH . Q 5 HOH D 3 203 11 HOH HOH . R 5 HOH B 1 301 6 HOH HOH . R 5 HOH B 2 302 4 HOH HOH . R 5 HOH B 3 303 5 HOH HOH . R 5 HOH B 4 304 7 HOH HOH . R 5 HOH B 5 305 31 HOH HOH . R 5 HOH B 6 306 8 HOH HOH . R 5 HOH B 7 307 28 HOH HOH . R 5 HOH B 8 308 29 HOH HOH . S 5 HOH C 1 201 10 HOH HOH . S 5 HOH C 2 202 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GVE . . . O 4 -55.329 28.018 -27.018 1 33.89 ? N GVE 101 C 1 HETATM 2 C C1 GVE . . . O 4 -54.378 28.593 -27.907 1 32.92 ? C1 GVE 101 C 1 HETATM 3 C CB GVE . . . O 4 -52.988 28.411 -27.342 1 33.35 ? CB GVE 101 C 1 HETATM 4 C CG GVE . . . O 4 -52.086 27.938 -28.479 1 37.03 ? CG GVE 101 C 1 HETATM 5 C C GVE . . . O 4 -52.341 28.517 -29.829 1 36.49 ? C GVE 101 C 1 HETATM 6 O OXT GVE . . . O 4 -52.057 27.732 -31.008 1 31.81 ? OXT GVE 101 C 1 HETATM 7 O O GVE . . . O 4 -52.752 29.664 -29.925 1 47.36 ? O GVE 101 C 1 HETATM 8 C CH3 GVE . . . O 4 -52.069 28.399 -32.281 1 30.66 ? CH3 GVE 101 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #