data_5CRY # _model_server_result.job_id XGG-ObYiAW_dySSzALNhqw _model_server_result.datetime_utc '2024-11-14 06:43:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cry # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":704}' # _entry.id 5CRY # _exptl.entry_id 5CRY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 128.08 _cell.angle_gamma 90 _cell.entry_id 5CRY _cell.length_a 159.654 _cell.length_b 82.58 _cell.length_c 107.694 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CRY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 701 NAG 2 n C NAG 2 C 2 NAG A 702 NAG 2 n C BMA 3 C 3 BMA A 703 BMA 2 n D NAG 1 D 1 NAG A 706 NAG 2 n D NAG 2 D 2 NAG A 707 NAG 2 n D BMA 3 D 3 BMA A 708 BMA 2 n E NAG 1 E 1 NAG B 701 NAG 2 n E NAG 2 E 2 NAG B 702 NAG 2 n E BMA 3 E 3 BMA B 703 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 348 1_555 A SG CYS 39 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? disulf ? disulf2 A SG CYS 17 A CYS 358 1_555 A SG CYS 30 A CYS 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? disulf ? disulf3 A SG CYS 64 A CYS 405 1_555 A SG CYS 343 A CYS 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? disulf ? disulf4 A SG CYS 84 A CYS 425 1_555 A SG CYS 306 A CYS 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 A SG CYS 116 A CYS 457 1_555 A SG CYS 191 A CYS 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 A SG CYS 140 A CYS 481 1_555 A SG CYS 334 A CYS 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf7 A SG CYS 150 A CYS 491 1_555 A SG CYS 164 A CYS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf8 A SG CYS 161 A CYS 502 1_555 A SG CYS 174 A CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf9 A SG CYS 232 A CYS 573 1_555 A SG CYS 246 A CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 A SG CYS 284 A CYS 625 1_555 A SG CYS 289 A CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf11 B SG CYS 7 B CYS 348 1_555 B SG CYS 39 B CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? disulf ? disulf12 B SG CYS 17 B CYS 358 1_555 B SG CYS 30 B CYS 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf13 B SG CYS 64 B CYS 405 1_555 B SG CYS 343 B CYS 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf14 B SG CYS 84 B CYS 425 1_555 B SG CYS 306 B CYS 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf15 B SG CYS 116 B CYS 457 1_555 B SG CYS 191 B CYS 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf16 B SG CYS 140 B CYS 481 1_555 B SG CYS 334 B CYS 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf17 B SG CYS 150 B CYS 491 1_555 B SG CYS 164 B CYS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf18 B SG CYS 161 B CYS 502 1_555 B SG CYS 174 B CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf19 B SG CYS 232 B CYS 573 1_555 B SG CYS 246 B CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf20 B SG CYS 284 B CYS 625 1_555 B SG CYS 289 B CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? covale ? covale1 A ND2 ASN 27 A ASN 368 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 204 A ASN 545 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale3 B ND2 ASN 27 B ASN 368 1_555 H C1 NAG . B NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale4 B ND2 ASN 135 B ASN 476 1_555 I C1 NAG . B NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale5 B ND2 ASN 204 B ASN 545 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale9 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale11 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? metalc ? metalc1 A OD2 ASP 54 A ASP 395 1_555 F FE FE . A FE 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A OH TYR 92 A TYR 433 1_555 F FE FE . A FE 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc3 A OH TYR 185 A TYR 526 1_555 F FE FE . A FE 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc4 F FE FE . A FE 704 1_555 G O1 BCT . A BCT 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc5 F FE FE . A FE 704 1_555 G O2 BCT . A BCT 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc6 B OD2 ASP 54 B ASP 395 1_555 J FE FE . B FE 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc7 B OH TYR 92 B TYR 433 1_555 J FE FE . B FE 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc8 B OH TYR 185 B TYR 526 1_555 J FE FE . B FE 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 J FE FE . B FE 706 1_555 K O1 BCT . B BCT 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc10 J FE FE . B FE 706 1_555 K O2 BCT . B BCT 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CRY _atom_sites.fract_transf_matrix[1][1] 0.006264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004908 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 FE A 1 704 704 FE FE . G 4 BCT A 1 705 705 BCT BCT . H 5 NAG B 1 704 704 NAG NAG . I 5 NAG B 1 705 705 NAG NAG . J 3 FE B 1 706 706 FE FE . K 4 BCT B 1 707 707 BCT BCT . L 6 HOH A 1 801 801 HOH HOH . L 6 HOH A 2 802 802 HOH HOH . L 6 HOH A 3 803 803 HOH HOH . L 6 HOH A 4 804 804 HOH HOH . L 6 HOH A 5 805 805 HOH HOH . L 6 HOH A 6 806 806 HOH HOH . L 6 HOH A 7 807 807 HOH HOH . L 6 HOH A 8 808 808 HOH HOH . L 6 HOH A 9 809 809 HOH HOH . L 6 HOH A 10 810 810 HOH HOH . L 6 HOH A 11 811 811 HOH HOH . L 6 HOH A 12 812 812 HOH HOH . L 6 HOH A 13 813 813 HOH HOH . L 6 HOH A 14 814 814 HOH HOH . L 6 HOH A 15 815 815 HOH HOH . L 6 HOH A 16 816 816 HOH HOH . L 6 HOH A 17 817 817 HOH HOH . L 6 HOH A 18 818 818 HOH HOH . L 6 HOH A 19 819 819 HOH HOH . L 6 HOH A 20 820 820 HOH HOH . L 6 HOH A 21 821 821 HOH HOH . L 6 HOH A 22 822 822 HOH HOH . L 6 HOH A 23 823 823 HOH HOH . L 6 HOH A 24 825 825 HOH HOH . L 6 HOH A 25 826 827 HOH HOH . L 6 HOH A 26 827 826 HOH HOH . L 6 HOH A 27 828 828 HOH HOH . L 6 HOH A 28 829 829 HOH HOH . L 6 HOH A 29 830 830 HOH HOH . L 6 HOH A 30 831 831 HOH HOH . L 6 HOH A 31 832 832 HOH HOH . L 6 HOH A 32 833 833 HOH HOH . L 6 HOH A 33 834 834 HOH HOH . L 6 HOH A 34 835 835 HOH HOH . L 6 HOH A 35 836 836 HOH HOH . L 6 HOH A 36 837 837 HOH HOH . L 6 HOH A 37 838 838 HOH HOH . L 6 HOH A 38 839 839 HOH HOH . L 6 HOH A 39 840 840 HOH HOH . L 6 HOH A 40 841 841 HOH HOH . L 6 HOH A 41 842 842 HOH HOH . L 6 HOH A 42 843 843 HOH HOH . L 6 HOH A 43 844 844 HOH HOH . M 6 HOH B 1 801 801 HOH HOH . M 6 HOH B 2 802 802 HOH HOH . M 6 HOH B 3 803 803 HOH HOH . M 6 HOH B 4 804 804 HOH HOH . M 6 HOH B 5 805 805 HOH HOH . M 6 HOH B 6 806 806 HOH HOH . M 6 HOH B 7 807 807 HOH HOH . M 6 HOH B 8 808 808 HOH HOH . M 6 HOH B 9 809 809 HOH HOH . M 6 HOH B 10 810 810 HOH HOH . M 6 HOH B 11 811 811 HOH HOH . M 6 HOH B 12 812 812 HOH HOH . M 6 HOH B 13 813 813 HOH HOH . M 6 HOH B 14 814 814 HOH HOH . M 6 HOH B 15 815 815 HOH HOH . M 6 HOH B 16 816 816 HOH HOH . M 6 HOH B 17 817 817 HOH HOH . M 6 HOH B 18 818 818 HOH HOH . M 6 HOH B 19 819 819 HOH HOH . M 6 HOH B 20 820 820 HOH HOH . M 6 HOH B 21 821 821 HOH HOH . M 6 HOH B 22 822 822 HOH HOH . M 6 HOH B 23 823 823 HOH HOH . M 6 HOH B 24 824 824 HOH HOH . M 6 HOH B 25 825 825 HOH HOH . M 6 HOH B 26 826 826 HOH HOH . M 6 HOH B 27 827 827 HOH HOH . M 6 HOH B 28 828 828 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.936 _atom_site.Cartn_y -0.264 _atom_site.Cartn_z -37.914 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 86.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 704 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #