data_5CS3 # _model_server_result.job_id 65eVIxr0NR3jtlsxwAaDfQ _model_server_result.datetime_utc '2025-02-25 11:10:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cs3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5CS3 # _exptl.entry_id 5CS3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 252.331 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.17 _cell.angle_gamma 90 _cell.entry_id 5CS3 _cell.length_a 53.34 _cell.length_b 63.378 _cell.length_c 57.482 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CS3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 70 1_555 A SG CYS 69 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? disulf ? disulf2 A SG CYS 47 A CYS 74 1_555 A SG CYS 57 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf3 A SG CYS 101 A CYS 128 1_555 A SG CYS 179 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 122 A CYS 149 1_555 A SG CYS 162 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 A SG CYS 150 A CYS 177 1_555 A SG CYS 174 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf6 B SG CYS 43 B CYS 70 1_555 B SG CYS 69 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? disulf ? disulf7 B SG CYS 47 B CYS 74 1_555 B SG CYS 57 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf8 B SG CYS 101 B CYS 128 1_555 B SG CYS 179 B CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? disulf ? disulf9 B SG CYS 122 B CYS 149 1_555 B SG CYS 162 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf10 B SG CYS 150 B CYS 177 1_555 B SG CYS 174 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? # _chem_comp.formula 'C9 H20 N2 O4 S' _chem_comp.formula_weight 252.331 _chem_comp.id EP1 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2S S EP1 doub 83 n n S O3S EP1 doub 84 n n S O1S EP1 sing 85 n n S C11 EP1 sing 86 n n O1S H1S EP1 sing 87 n n C11 C10 EP1 sing 88 n n C11 H111 EP1 sing 89 n n C11 H112 EP1 sing 90 n n C10 C9 EP1 sing 91 n n C10 H101 EP1 sing 92 n n C10 H102 EP1 sing 93 n n C9 N1 EP1 sing 94 n n C9 H91 EP1 sing 95 n n C9 H92 EP1 sing 96 n n N1 C2 EP1 sing 97 n n N1 C6 EP1 sing 98 n n C2 C3 EP1 sing 99 n n C2 H21 EP1 sing 100 n n C2 H22 EP1 sing 101 n n C3 N4 EP1 sing 102 n n C3 H31 EP1 sing 103 n n C3 H32 EP1 sing 104 n n N4 C5 EP1 sing 105 n n N4 C7 EP1 sing 106 n n C5 C6 EP1 sing 107 n n C5 H51 EP1 sing 108 n n C5 H52 EP1 sing 109 n n C6 H61 EP1 sing 110 n n C6 H62 EP1 sing 111 n n C7 C8 EP1 sing 112 n n C7 H71 EP1 sing 113 n n C7 H72 EP1 sing 114 n n C8 O8 EP1 sing 115 n n C8 H81 EP1 sing 116 n n C8 H82 EP1 sing 117 n n O8 HO8 EP1 sing 118 n n # _atom_sites.entry_id 5CS3 _atom_sites.fract_transf_matrix[1][1] 0.018748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001697 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EP1 B 1 301 1 EP1 DRG . D 3 HOH A 1 301 50 HOH HOH . D 3 HOH A 2 302 54 HOH HOH . D 3 HOH A 3 303 34 HOH HOH . D 3 HOH A 4 304 45 HOH HOH . D 3 HOH A 5 305 5 HOH HOH . D 3 HOH A 6 306 25 HOH HOH . D 3 HOH A 7 307 2 HOH HOH . D 3 HOH A 8 308 51 HOH HOH . D 3 HOH A 9 309 82 HOH HOH . D 3 HOH A 10 310 29 HOH HOH . D 3 HOH A 11 311 65 HOH HOH . D 3 HOH A 12 312 43 HOH HOH . D 3 HOH A 13 313 74 HOH HOH . D 3 HOH A 14 314 22 HOH HOH . D 3 HOH A 15 315 8 HOH HOH . D 3 HOH A 16 316 67 HOH HOH . D 3 HOH A 17 317 75 HOH HOH . D 3 HOH A 18 318 49 HOH HOH . D 3 HOH A 19 319 64 HOH HOH . D 3 HOH A 20 320 93 HOH HOH . D 3 HOH A 21 321 36 HOH HOH . D 3 HOH A 22 322 7 HOH HOH . D 3 HOH A 23 323 84 HOH HOH . D 3 HOH A 24 324 99 HOH HOH . D 3 HOH A 25 325 79 HOH HOH . D 3 HOH A 26 326 52 HOH HOH . D 3 HOH A 27 327 95 HOH HOH . D 3 HOH A 28 328 46 HOH HOH . D 3 HOH A 29 329 68 HOH HOH . D 3 HOH A 30 330 61 HOH HOH . D 3 HOH A 31 331 92 HOH HOH . D 3 HOH A 32 332 78 HOH HOH . D 3 HOH A 33 333 66 HOH HOH . D 3 HOH A 34 334 53 HOH HOH . E 3 HOH B 1 401 47 HOH HOH . E 3 HOH B 2 402 70 HOH HOH . E 3 HOH B 3 403 56 HOH HOH . E 3 HOH B 4 404 89 HOH HOH . E 3 HOH B 5 405 32 HOH HOH . E 3 HOH B 6 406 71 HOH HOH . E 3 HOH B 7 407 19 HOH HOH . E 3 HOH B 8 408 23 HOH HOH . E 3 HOH B 9 409 41 HOH HOH . E 3 HOH B 10 410 16 HOH HOH . E 3 HOH B 11 411 28 HOH HOH . E 3 HOH B 12 412 12 HOH HOH . E 3 HOH B 13 413 10 HOH HOH . E 3 HOH B 14 414 27 HOH HOH . E 3 HOH B 15 415 88 HOH HOH . E 3 HOH B 16 416 91 HOH HOH . E 3 HOH B 17 417 59 HOH HOH . E 3 HOH B 18 418 13 HOH HOH . E 3 HOH B 19 419 9 HOH HOH . E 3 HOH B 20 420 85 HOH HOH . E 3 HOH B 21 421 62 HOH HOH . E 3 HOH B 22 422 11 HOH HOH . E 3 HOH B 23 423 26 HOH HOH . E 3 HOH B 24 424 30 HOH HOH . E 3 HOH B 25 425 15 HOH HOH . E 3 HOH B 26 426 98 HOH HOH . E 3 HOH B 27 427 76 HOH HOH . E 3 HOH B 28 428 39 HOH HOH . E 3 HOH B 29 429 101 HOH HOH . E 3 HOH B 30 430 83 HOH HOH . E 3 HOH B 31 431 77 HOH HOH . E 3 HOH B 32 432 6 HOH HOH . E 3 HOH B 33 433 17 HOH HOH . E 3 HOH B 34 434 60 HOH HOH . E 3 HOH B 35 435 80 HOH HOH . E 3 HOH B 36 436 86 HOH HOH . E 3 HOH B 37 437 38 HOH HOH . E 3 HOH B 38 438 33 HOH HOH . E 3 HOH B 39 439 35 HOH HOH . E 3 HOH B 40 440 18 HOH HOH . E 3 HOH B 41 441 81 HOH HOH . E 3 HOH B 42 442 63 HOH HOH . E 3 HOH B 43 443 55 HOH HOH . E 3 HOH B 44 444 100 HOH HOH . E 3 HOH B 45 445 24 HOH HOH . E 3 HOH B 46 446 48 HOH HOH . E 3 HOH B 47 447 31 HOH HOH . E 3 HOH B 48 448 37 HOH HOH . E 3 HOH B 49 449 58 HOH HOH . E 3 HOH B 50 450 72 HOH HOH . E 3 HOH B 51 451 94 HOH HOH . E 3 HOH B 52 452 90 HOH HOH . E 3 HOH B 53 453 87 HOH HOH . E 3 HOH B 54 454 14 HOH HOH . E 3 HOH B 55 455 97 HOH HOH . E 3 HOH B 56 456 96 HOH HOH . E 3 HOH B 57 457 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2S EP1 . . . C 2 -4.702 30.724 -13.735 1 52.83 ? O2S EP1 301 B 1 HETATM 2 S S EP1 . . . C 2 -5.63 30.15 -12.758 1 57.69 ? S EP1 301 B 1 HETATM 3 O O3S EP1 . . . C 2 -6.364 28.931 -13.261 1 53.83 ? O3S EP1 301 B 1 HETATM 4 O O1S EP1 . . . C 2 -6.639 31.206 -12.37 1 51.53 ? O1S EP1 301 B 1 HETATM 5 C C11 EP1 . . . C 2 -4.649 29.515 -11.338 1 54.83 ? C11 EP1 301 B 1 HETATM 6 C C10 EP1 . . . C 2 -3.549 28.577 -11.847 1 55.32 ? C10 EP1 301 B 1 HETATM 7 C C9 EP1 . . . C 2 -2.758 27.873 -10.727 1 64.36 ? C9 EP1 301 B 1 HETATM 8 N N1 EP1 . . . C 2 -2.65 26.402 -10.931 1 66.14 ? N1 EP1 301 B 1 HETATM 9 C C2 EP1 . . . C 2 -2.428 25.763 -9.601 1 68.11 ? C2 EP1 301 B 1 HETATM 10 C C3 EP1 . . . C 2 -1.668 24.411 -9.653 1 70.05 ? C3 EP1 301 B 1 HETATM 11 N N4 EP1 . . . C 2 -0.498 24.475 -10.562 1 68.48 ? N4 EP1 301 B 1 HETATM 12 C C5 EP1 . . . C 2 -1.013 24.718 -11.92 1 68.33 ? C5 EP1 301 B 1 HETATM 13 C C6 EP1 . . . C 2 -1.69 26.103 -12.023 1 65.35 ? C6 EP1 301 B 1 HETATM 14 C C7 EP1 . . . C 2 0.478 25.512 -10.142 1 68.65 ? C7 EP1 301 B 1 HETATM 15 C C8 EP1 . . . C 2 1.82 24.886 -9.787 1 71.18 ? C8 EP1 301 B 1 HETATM 16 O O8 EP1 . . . C 2 2.742 25.056 -10.875 1 71.18 ? O8 EP1 301 B 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #