data_5CS9 # _model_server_result.job_id XpynWH8GUxrdOPC23Un23g _model_server_result.datetime_utc '2024-11-14 06:57:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cs9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5CS9 # _exptl.entry_id 5CS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.96 _cell.angle_gamma 90 _cell.entry_id 5CS9 _cell.length_a 53.286 _cell.length_b 64.152 _cell.length_c 57.199 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 70 1_555 A SG CYS 69 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 A SG CYS 47 A CYS 74 1_555 A SG CYS 57 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf3 A SG CYS 101 A CYS 128 1_555 A SG CYS 179 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 A SG CYS 122 A CYS 149 1_555 A SG CYS 162 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 150 A CYS 177 1_555 A SG CYS 174 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 43 B CYS 70 1_555 B SG CYS 69 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 B SG CYS 47 B CYS 74 1_555 B SG CYS 57 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf8 B SG CYS 101 B CYS 128 1_555 B SG CYS 179 B CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 B SG CYS 122 B CYS 149 1_555 B SG CYS 162 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 150 B CYS 177 1_555 B SG CYS 174 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5CS9 _atom_sites.fract_transf_matrix[1][1] 0.018767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001628 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MES B 1 301 4825 MES MES . D 3 EDO B 1 302 1 EDO EDO . E 4 HOH A 1 301 55 HOH HOH . E 4 HOH A 2 302 132 HOH HOH . E 4 HOH A 3 303 12 HOH HOH . E 4 HOH A 4 304 18 HOH HOH . E 4 HOH A 5 305 109 HOH HOH . E 4 HOH A 6 306 118 HOH HOH . E 4 HOH A 7 307 19 HOH HOH . E 4 HOH A 8 308 30 HOH HOH . E 4 HOH A 9 309 16 HOH HOH . E 4 HOH A 10 310 130 HOH HOH . E 4 HOH A 11 311 1 HOH HOH . E 4 HOH A 12 312 10 HOH HOH . E 4 HOH A 13 313 46 HOH HOH . E 4 HOH A 14 314 116 HOH HOH . E 4 HOH A 15 315 17 HOH HOH . E 4 HOH A 16 316 64 HOH HOH . E 4 HOH A 17 317 59 HOH HOH . E 4 HOH A 18 318 145 HOH HOH . E 4 HOH A 19 319 128 HOH HOH . E 4 HOH A 20 320 2 HOH HOH . E 4 HOH A 21 321 91 HOH HOH . E 4 HOH A 22 322 7 HOH HOH . E 4 HOH A 23 323 28 HOH HOH . E 4 HOH A 24 324 127 HOH HOH . E 4 HOH A 25 325 47 HOH HOH . E 4 HOH A 26 326 8 HOH HOH . E 4 HOH A 27 327 54 HOH HOH . E 4 HOH A 28 328 74 HOH HOH . E 4 HOH A 29 329 141 HOH HOH . E 4 HOH A 30 330 63 HOH HOH . E 4 HOH A 31 331 4 HOH HOH . E 4 HOH A 32 332 67 HOH HOH . E 4 HOH A 33 333 89 HOH HOH . E 4 HOH A 34 334 144 HOH HOH . E 4 HOH A 35 335 95 HOH HOH . E 4 HOH A 36 336 86 HOH HOH . E 4 HOH A 37 337 83 HOH HOH . E 4 HOH A 38 338 135 HOH HOH . E 4 HOH A 39 339 104 HOH HOH . E 4 HOH A 40 340 26 HOH HOH . E 4 HOH A 41 341 106 HOH HOH . E 4 HOH A 42 342 70 HOH HOH . E 4 HOH A 43 343 14 HOH HOH . E 4 HOH A 44 344 124 HOH HOH . E 4 HOH A 45 345 125 HOH HOH . E 4 HOH A 46 346 38 HOH HOH . E 4 HOH A 47 347 72 HOH HOH . E 4 HOH A 48 348 142 HOH HOH . E 4 HOH A 49 349 134 HOH HOH . E 4 HOH A 50 350 122 HOH HOH . E 4 HOH A 51 351 148 HOH HOH . E 4 HOH A 52 352 140 HOH HOH . E 4 HOH A 53 353 27 HOH HOH . E 4 HOH A 54 354 150 HOH HOH . E 4 HOH A 55 355 23 HOH HOH . E 4 HOH A 56 356 85 HOH HOH . E 4 HOH A 57 357 107 HOH HOH . E 4 HOH A 58 358 149 HOH HOH . E 4 HOH A 59 359 139 HOH HOH . E 4 HOH A 60 360 101 HOH HOH . E 4 HOH A 61 361 105 HOH HOH . E 4 HOH A 62 362 133 HOH HOH . E 4 HOH A 63 363 129 HOH HOH . E 4 HOH A 64 364 13 HOH HOH . E 4 HOH A 65 365 11 HOH HOH . E 4 HOH A 66 366 123 HOH HOH . E 4 HOH A 67 367 114 HOH HOH . E 4 HOH A 68 368 9 HOH HOH . E 4 HOH A 69 369 126 HOH HOH . F 4 HOH B 1 401 73 HOH HOH . F 4 HOH B 2 402 41 HOH HOH . F 4 HOH B 3 403 58 HOH HOH . F 4 HOH B 4 404 75 HOH HOH . F 4 HOH B 5 405 84 HOH HOH . F 4 HOH B 6 406 32 HOH HOH . F 4 HOH B 7 407 79 HOH HOH . F 4 HOH B 8 408 21 HOH HOH . F 4 HOH B 9 409 111 HOH HOH . F 4 HOH B 10 410 108 HOH HOH . F 4 HOH B 11 411 25 HOH HOH . F 4 HOH B 12 412 77 HOH HOH . F 4 HOH B 13 413 6 HOH HOH . F 4 HOH B 14 414 113 HOH HOH . F 4 HOH B 15 415 69 HOH HOH . F 4 HOH B 16 416 68 HOH HOH . F 4 HOH B 17 417 60 HOH HOH . F 4 HOH B 18 418 49 HOH HOH . F 4 HOH B 19 419 65 HOH HOH . F 4 HOH B 20 420 87 HOH HOH . F 4 HOH B 21 421 103 HOH HOH . F 4 HOH B 22 422 96 HOH HOH . F 4 HOH B 23 423 33 HOH HOH . F 4 HOH B 24 424 62 HOH HOH . F 4 HOH B 25 425 88 HOH HOH . F 4 HOH B 26 426 80 HOH HOH . F 4 HOH B 27 427 119 HOH HOH . F 4 HOH B 28 428 120 HOH HOH . F 4 HOH B 29 429 92 HOH HOH . F 4 HOH B 30 430 43 HOH HOH . F 4 HOH B 31 431 31 HOH HOH . F 4 HOH B 32 432 50 HOH HOH . F 4 HOH B 33 433 117 HOH HOH . F 4 HOH B 34 434 138 HOH HOH . F 4 HOH B 35 435 146 HOH HOH . F 4 HOH B 36 436 81 HOH HOH . F 4 HOH B 37 437 22 HOH HOH . F 4 HOH B 38 438 121 HOH HOH . F 4 HOH B 39 439 66 HOH HOH . F 4 HOH B 40 440 82 HOH HOH . F 4 HOH B 41 441 24 HOH HOH . F 4 HOH B 42 442 97 HOH HOH . F 4 HOH B 43 443 152 HOH HOH . F 4 HOH B 44 444 93 HOH HOH . F 4 HOH B 45 445 20 HOH HOH . F 4 HOH B 46 446 100 HOH HOH . F 4 HOH B 47 447 52 HOH HOH . F 4 HOH B 48 448 37 HOH HOH . F 4 HOH B 49 449 53 HOH HOH . F 4 HOH B 50 450 76 HOH HOH . F 4 HOH B 51 451 29 HOH HOH . F 4 HOH B 52 452 147 HOH HOH . F 4 HOH B 53 453 57 HOH HOH . F 4 HOH B 54 454 98 HOH HOH . F 4 HOH B 55 455 45 HOH HOH . F 4 HOH B 56 456 39 HOH HOH . F 4 HOH B 57 457 136 HOH HOH . F 4 HOH B 58 458 71 HOH HOH . F 4 HOH B 59 459 40 HOH HOH . F 4 HOH B 60 460 90 HOH HOH . F 4 HOH B 61 461 48 HOH HOH . F 4 HOH B 62 462 153 HOH HOH . F 4 HOH B 63 463 110 HOH HOH . F 4 HOH B 64 464 155 HOH HOH . F 4 HOH B 65 465 35 HOH HOH . F 4 HOH B 66 466 36 HOH HOH . F 4 HOH B 67 467 44 HOH HOH . F 4 HOH B 68 468 34 HOH HOH . F 4 HOH B 69 469 42 HOH HOH . F 4 HOH B 70 470 3 HOH HOH . F 4 HOH B 71 471 15 HOH HOH . F 4 HOH B 72 472 56 HOH HOH . F 4 HOH B 73 473 151 HOH HOH . F 4 HOH B 74 474 112 HOH HOH . F 4 HOH B 75 475 5 HOH HOH . F 4 HOH B 76 476 102 HOH HOH . F 4 HOH B 77 477 51 HOH HOH . F 4 HOH B 78 478 137 HOH HOH . F 4 HOH B 79 479 154 HOH HOH . F 4 HOH B 80 480 78 HOH HOH . F 4 HOH B 81 481 61 HOH HOH . F 4 HOH B 82 482 94 HOH HOH . F 4 HOH B 83 483 99 HOH HOH . F 4 HOH B 84 484 143 HOH HOH . F 4 HOH B 85 485 115 HOH HOH . F 4 HOH B 86 486 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 0.294 25.526 -9.114 1 45.06 ? C1 EDO 302 B 1 HETATM 2 O O1 EDO . . . D 3 1.392 25.713 -10.02 1 51.11 ? O1 EDO 302 B 1 HETATM 3 C C2 EDO . . . D 3 0.679 24.636 -7.932 1 41.66 ? C2 EDO 302 B 1 HETATM 4 O O2 EDO . . . D 3 -0.487 23.97 -7.435 1 48.42 ? O2 EDO 302 B 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #