data_5CSI # _model_server_result.job_id UUDaP7IVDFW_nz0h6P05Vw _model_server_result.datetime_utc '2024-12-26 20:04:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5csi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 5CSI # _exptl.entry_id 5CSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CSI _cell.length_a 38.31 _cell.length_b 38.57 _cell.length_c 173.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 22 A SER 18 1_555 D CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc2 A O GLU 25 A GLU 21 1_555 D CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc3 A O ASP 27 A ASP 23 1_555 D CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 A O LYS 30 A LYS 26 1_555 D CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 A OE1 GLU 35 A GLU 31 1_555 D CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc6 A OE2 GLU 35 A GLU 31 1_555 D CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc7 A OD1 ASP 65 A ASP 61 1_555 E CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 A OD1 ASP 67 A ASP 63 1_555 E CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc9 A OD2 ASP 67 A ASP 63 1_555 E CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc10 A OD1 ASP 69 A ASP 65 1_555 E CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc11 A O GLU 71 A GLU 67 1_555 E CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc12 A OE1 GLU 76 A GLU 72 1_555 E CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc13 A OE2 GLU 76 A GLU 72 1_555 E CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc14 D CA CA . A CA 101 1_555 H O HOH . A HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc15 B O SER 22 B SER 18 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc16 B O GLU 25 B GLU 21 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc17 B O ASP 27 B ASP 23 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc18 B O LYS 30 B LYS 26 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc19 B OE1 GLU 35 B GLU 31 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc20 B OE2 GLU 35 B GLU 31 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc21 B OD1 ASP 65 B ASP 61 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc22 B OD1 ASP 67 B ASP 63 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc23 B OD1 ASP 69 B ASP 65 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc24 B O GLU 71 B GLU 67 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc25 B OE1 GLU 76 B GLU 72 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc26 B OE2 GLU 76 B GLU 72 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc27 F CA CA . B CA 101 1_555 I O HOH . B HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc28 G CA CA . B CA 102 1_555 I O HOH . B HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CSI _atom_sites.fract_transf_matrix[1][1] 0.026103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025927 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CA A 1 101 3 CA CA . E 3 CA A 1 102 4 CA CA . F 3 CA B 1 101 1 CA CA . G 3 CA B 1 102 2 CA CA . H 4 HOH A 1 201 24 HOH HOH . H 4 HOH A 2 202 30 HOH HOH . H 4 HOH A 3 203 13 HOH HOH . H 4 HOH A 4 204 37 HOH HOH . H 4 HOH A 5 205 2 HOH HOH . H 4 HOH A 6 206 14 HOH HOH . H 4 HOH A 7 207 35 HOH HOH . H 4 HOH A 8 208 32 HOH HOH . H 4 HOH A 9 209 40 HOH HOH . H 4 HOH A 10 210 39 HOH HOH . H 4 HOH A 11 211 23 HOH HOH . I 4 HOH B 1 201 10 HOH HOH . I 4 HOH B 2 202 28 HOH HOH . I 4 HOH B 3 203 31 HOH HOH . I 4 HOH B 4 204 25 HOH HOH . I 4 HOH B 5 205 22 HOH HOH . I 4 HOH B 6 206 4 HOH HOH . I 4 HOH B 7 207 6 HOH HOH . I 4 HOH B 8 208 17 HOH HOH . I 4 HOH B 9 209 8 HOH HOH . I 4 HOH B 10 210 29 HOH HOH . I 4 HOH B 11 211 15 HOH HOH . I 4 HOH B 12 212 5 HOH HOH . I 4 HOH B 13 213 3 HOH HOH . I 4 HOH B 14 214 7 HOH HOH . I 4 HOH B 15 215 20 HOH HOH . I 4 HOH B 16 216 16 HOH HOH . I 4 HOH B 17 217 38 HOH HOH . I 4 HOH B 18 218 1 HOH HOH . I 4 HOH B 19 219 33 HOH HOH . I 4 HOH B 20 220 19 HOH HOH . I 4 HOH B 21 221 9 HOH HOH . I 4 HOH B 22 222 26 HOH HOH . I 4 HOH B 23 223 36 HOH HOH . I 4 HOH B 24 224 21 HOH HOH . I 4 HOH B 25 225 27 HOH HOH . I 4 HOH B 26 226 34 HOH HOH . I 4 HOH B 27 227 18 HOH HOH . I 4 HOH B 28 228 12 HOH HOH . I 4 HOH B 29 229 11 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.771 _atom_site.Cartn_y -0.691 _atom_site.Cartn_z -37.368 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #