data_5CSM # _model_server_result.job_id Rp3Rrl_vc-d7Nlcu5irOpQ _model_server_result.datetime_utc '2025-07-08 06:25:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5csm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 5CSM # _exptl.entry_id 5CSM _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'TRYPTOPHAN BOUND TO A REGULATORY SITE' _entity.formula_weight 204.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.6 _cell.angle_gamma 90 _cell.entry_id 5CSM _cell.length_a 94.6 _cell.length_b 51.4 _cell.length_c 66.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CSM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 64.689693 0 59.729503 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 306 n n N H TRP sing 307 n n N H2 TRP sing 308 n n CA C TRP sing 309 n n CA CB TRP sing 310 n n CA HA TRP sing 311 n n C O TRP doub 312 n n C OXT TRP sing 313 n n CB CG TRP sing 314 n n CB HB2 TRP sing 315 n n CB HB3 TRP sing 316 n n CG CD1 TRP doub 317 n y CG CD2 TRP sing 318 n y CD1 NE1 TRP sing 319 n y CD1 HD1 TRP sing 320 n n CD2 CE2 TRP doub 321 n y CD2 CE3 TRP sing 322 n y NE1 CE2 TRP sing 323 n y NE1 HE1 TRP sing 324 n n CE2 CZ2 TRP sing 325 n y CE3 CZ3 TRP doub 326 n y CE3 HE3 TRP sing 327 n n CZ2 CH2 TRP doub 328 n y CZ2 HZ2 TRP sing 329 n n CZ3 CH2 TRP sing 330 n y CZ3 HZ3 TRP sing 331 n n CH2 HH2 TRP sing 332 n n OXT HXT TRP sing 333 n n # _atom_sites.entry_id 5CSM _atom_sites.fract_transf_matrix[1][1] 0.010571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005293 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRP A 1 300 300 TRP TRP . C 3 HOH A 1 400 400 HOH HOH . C 3 HOH A 2 401 401 HOH HOH . C 3 HOH A 3 402 402 HOH HOH . C 3 HOH A 4 403 403 HOH HOH . C 3 HOH A 5 404 404 HOH HOH . C 3 HOH A 6 405 405 HOH HOH . C 3 HOH A 7 406 406 HOH HOH . C 3 HOH A 8 407 407 HOH HOH . C 3 HOH A 9 408 408 HOH HOH . C 3 HOH A 10 409 409 HOH HOH . C 3 HOH A 11 410 410 HOH HOH . C 3 HOH A 12 411 411 HOH HOH . C 3 HOH A 13 412 412 HOH HOH . C 3 HOH A 14 413 413 HOH HOH . C 3 HOH A 15 414 414 HOH HOH . C 3 HOH A 16 415 415 HOH HOH . C 3 HOH A 17 416 416 HOH HOH . C 3 HOH A 18 417 417 HOH HOH . C 3 HOH A 19 418 418 HOH HOH . C 3 HOH A 20 419 419 HOH HOH . C 3 HOH A 21 420 420 HOH HOH . C 3 HOH A 22 421 421 HOH HOH . C 3 HOH A 23 422 422 HOH HOH . C 3 HOH A 24 423 423 HOH HOH . C 3 HOH A 25 424 424 HOH HOH . C 3 HOH A 26 425 425 HOH HOH . C 3 HOH A 27 426 426 HOH HOH . C 3 HOH A 28 427 427 HOH HOH . C 3 HOH A 29 428 428 HOH HOH . C 3 HOH A 30 429 429 HOH HOH . C 3 HOH A 31 430 430 HOH HOH . C 3 HOH A 32 431 431 HOH HOH . C 3 HOH A 33 432 432 HOH HOH . C 3 HOH A 34 433 433 HOH HOH . C 3 HOH A 35 434 434 HOH HOH . C 3 HOH A 36 435 435 HOH HOH . C 3 HOH A 37 436 436 HOH HOH . C 3 HOH A 38 437 437 HOH HOH . C 3 HOH A 39 438 438 HOH HOH . C 3 HOH A 40 439 439 HOH HOH . C 3 HOH A 41 440 440 HOH HOH . C 3 HOH A 42 441 441 HOH HOH . C 3 HOH A 43 442 442 HOH HOH . C 3 HOH A 44 443 443 HOH HOH . C 3 HOH A 45 444 444 HOH HOH . C 3 HOH A 46 445 445 HOH HOH . C 3 HOH A 47 446 446 HOH HOH . C 3 HOH A 48 447 447 HOH HOH . C 3 HOH A 49 448 448 HOH HOH . C 3 HOH A 50 449 449 HOH HOH . C 3 HOH A 51 450 450 HOH HOH . C 3 HOH A 52 451 451 HOH HOH . C 3 HOH A 53 452 452 HOH HOH . C 3 HOH A 54 453 453 HOH HOH . C 3 HOH A 55 454 454 HOH HOH . C 3 HOH A 56 455 455 HOH HOH . C 3 HOH A 57 456 456 HOH HOH . C 3 HOH A 58 457 457 HOH HOH . C 3 HOH A 59 458 458 HOH HOH . C 3 HOH A 60 459 459 HOH HOH . C 3 HOH A 61 460 460 HOH HOH . C 3 HOH A 62 461 461 HOH HOH . C 3 HOH A 63 462 462 HOH HOH . C 3 HOH A 64 463 463 HOH HOH . C 3 HOH A 65 464 464 HOH HOH . C 3 HOH A 66 465 465 HOH HOH . C 3 HOH A 67 466 466 HOH HOH . C 3 HOH A 68 467 467 HOH HOH . C 3 HOH A 69 468 468 HOH HOH . C 3 HOH A 70 469 469 HOH HOH . C 3 HOH A 71 470 470 HOH HOH . C 3 HOH A 72 471 471 HOH HOH . C 3 HOH A 73 472 472 HOH HOH . C 3 HOH A 74 473 473 HOH HOH . C 3 HOH A 75 474 474 HOH HOH . C 3 HOH A 76 475 475 HOH HOH . C 3 HOH A 77 476 476 HOH HOH . C 3 HOH A 78 477 477 HOH HOH . C 3 HOH A 79 478 478 HOH HOH . C 3 HOH A 80 479 479 HOH HOH . C 3 HOH A 81 480 480 HOH HOH . C 3 HOH A 82 481 481 HOH HOH . C 3 HOH A 83 482 482 HOH HOH . C 3 HOH A 84 483 483 HOH HOH . C 3 HOH A 85 484 484 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . B 2 37.746 4.904 16.705 1 16.68 ? N TRP 300 A 1 HETATM 2 C CA TRP . . . B 2 37.773 6.367 16.485 1 15.03 ? CA TRP 300 A 1 HETATM 3 C C TRP . . . B 2 38.975 6.984 17.184 1 16.39 ? C TRP 300 A 1 HETATM 4 O O TRP . . . B 2 39.343 8.128 16.86 1 18.19 ? O TRP 300 A 1 HETATM 5 C CB TRP . . . B 2 36.472 7.005 16.961 1 13.95 ? CB TRP 300 A 1 HETATM 6 C CG TRP . . . B 2 36.139 6.83 18.411 1 15.38 ? CG TRP 300 A 1 HETATM 7 C CD1 TRP . . . B 2 35.467 5.799 18.971 1 15.04 ? CD1 TRP 300 A 1 HETATM 8 C CD2 TRP . . . B 2 36.369 7.775 19.473 1 15.36 ? CD2 TRP 300 A 1 HETATM 9 N NE1 TRP . . . B 2 35.254 6.035 20.303 1 13.45 ? NE1 TRP 300 A 1 HETATM 10 C CE2 TRP . . . B 2 35.8 7.235 20.64 1 12.66 ? CE2 TRP 300 A 1 HETATM 11 C CE3 TRP . . . B 2 36.99 9.031 19.545 1 14.91 ? CE3 TRP 300 A 1 HETATM 12 C CZ2 TRP . . . B 2 35.825 7.901 21.862 1 12.6 ? CZ2 TRP 300 A 1 HETATM 13 C CZ3 TRP . . . B 2 37.008 9.696 20.769 1 14.17 ? CZ3 TRP 300 A 1 HETATM 14 C CH2 TRP . . . B 2 36.432 9.124 21.904 1 12.74 ? CH2 TRP 300 A 1 HETATM 15 O OXT TRP . . . B 2 39.558 6.298 18.037 1 17.04 ? OXT TRP 300 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 15 #