data_5CSU # _model_server_result.job_id ZmdFj5h1GM4sbxxJRy4Myw _model_server_result.datetime_utc '2024-11-25 18:17:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5csu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 5CSU # _exptl.entry_id 5CSU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 64.59 _cell.angle_beta 69.76 _cell.angle_gamma 66.57 _cell.entry_id 5CSU _cell.length_a 70.83 _cell.length_b 74.13 _cell.length_c 79.73 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CSU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 K N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 AGL GLC C1 O1 . O4 HO4 . sing 2 ? 3 2 1 GLC BGC C1 O1 . O4 HO4 . sing 3 ? 3 3 2 AGL GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC A 704 7SA 2 n C AGL 2 C 2 AGL A 704 7SA 3 n D BGC 1 D 1 BGC A 704 7SA 3 n D GLC 2 D 2 GLC A 704 7SA 3 n D AGL 3 D 3 AGL A 704 7SA 2 n E GLC 1 E 1 GLC B 704 7SA 2 n E AGL 2 E 2 AGL B 704 7SA 3 n F BGC 1 F 1 BGC B 704 7SA 3 n F GLC 2 F 2 GLC B 704 7SA 3 n F AGL 3 F 3 AGL B 704 7SA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 I C1 HMC . A HMC 603 1_555 C N4 AGL . C AGL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale2 J O4 HMC . A HMC 606 1_555 C C1 GLC . C GLC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale3 J C1 HMC . A HMC 606 1_555 D N4 AGL . D AGL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.515 ? covale ? covale4 L C1 HMC . B HMC 602 1_555 E N4 AGL . E AGL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale5 M O4 HMC . B HMC 605 1_555 E C1 GLC . E GLC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale6 M C1 HMC . B HMC 605 1_555 F N4 AGL . F AGL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? covale ? covale7 C O4 GLC . C GLC 1 1_555 C C1 AGL . C AGL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale8 D O4 BGC . D BGC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale9 D O4 GLC . D GLC 2 1_555 D C1 AGL . D AGL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale10 E O4 GLC . E GLC 1 1_555 E C1 AGL . E AGL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale11 F O4 BGC . F BGC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale12 F O4 GLC . F GLC 2 1_555 F C1 AGL . F AGL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 131 n n C1 C2 EDO sing 132 n n C1 H11 EDO sing 133 n n C1 H12 EDO sing 134 n n O1 HO1 EDO sing 135 n n C2 O2 EDO sing 136 n n C2 H21 EDO sing 137 n n C2 H22 EDO sing 138 n n O2 HO2 EDO sing 139 n n # _atom_sites.entry_id 5CSU _atom_sites.fract_transf_matrix[1][1] 0.014118 _atom_sites.fract_transf_matrix[1][2] -0.006118 _atom_sites.fract_transf_matrix[1][3] -0.003331 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014702 _atom_sites.fract_transf_matrix[2][3] -0.005291 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 EDO A 1 601 803 EDO EDO . H 4 EDO A 1 602 804 EDO EDO . I 5 HMC A 1 603 704 HMC 7SA . J 5 HMC A 1 606 704 HMC 7SA . K 4 EDO B 1 601 807 EDO EDO . L 5 HMC B 1 602 704 HMC 7SA . M 5 HMC B 1 605 704 HMC 7SA . N 6 HOH A 1 701 79 HOH HOH . N 6 HOH A 2 702 37 HOH HOH . N 6 HOH A 3 703 27 HOH HOH . N 6 HOH A 4 704 187 HOH HOH . N 6 HOH A 5 705 92 HOH HOH . N 6 HOH A 6 706 113 HOH HOH . N 6 HOH A 7 707 28 HOH HOH . N 6 HOH A 8 708 188 HOH HOH . N 6 HOH A 9 709 20 HOH HOH . N 6 HOH A 10 710 181 HOH HOH . N 6 HOH A 11 711 47 HOH HOH . N 6 HOH A 12 712 173 HOH HOH . N 6 HOH A 13 713 109 HOH HOH . N 6 HOH A 14 714 72 HOH HOH . N 6 HOH A 15 715 104 HOH HOH . N 6 HOH A 16 716 174 HOH HOH . N 6 HOH A 17 717 180 HOH HOH . N 6 HOH A 18 718 71 HOH HOH . N 6 HOH A 19 719 192 HOH HOH . N 6 HOH A 20 720 94 HOH HOH . N 6 HOH A 21 721 62 HOH HOH . N 6 HOH A 22 722 30 HOH HOH . N 6 HOH A 23 723 2 HOH HOH . N 6 HOH A 24 724 170 HOH HOH . N 6 HOH A 25 725 57 HOH HOH . N 6 HOH A 26 726 40 HOH HOH . N 6 HOH A 27 727 115 HOH HOH . N 6 HOH A 28 728 178 HOH HOH . N 6 HOH A 29 729 126 HOH HOH . N 6 HOH A 30 730 122 HOH HOH . N 6 HOH A 31 731 17 HOH HOH . N 6 HOH A 32 732 75 HOH HOH . N 6 HOH A 33 733 175 HOH HOH . N 6 HOH A 34 734 6 HOH HOH . N 6 HOH A 35 735 111 HOH HOH . N 6 HOH A 36 736 167 HOH HOH . N 6 HOH A 37 737 18 HOH HOH . N 6 HOH A 38 738 29 HOH HOH . N 6 HOH A 39 739 137 HOH HOH . N 6 HOH A 40 740 35 HOH HOH . N 6 HOH A 41 741 31 HOH HOH . N 6 HOH A 42 742 138 HOH HOH . N 6 HOH A 43 743 147 HOH HOH . N 6 HOH A 44 744 148 HOH HOH . N 6 HOH A 45 745 124 HOH HOH . N 6 HOH A 46 746 185 HOH HOH . N 6 HOH A 47 747 128 HOH HOH . N 6 HOH A 48 748 49 HOH HOH . N 6 HOH A 49 749 106 HOH HOH . N 6 HOH A 50 750 150 HOH HOH . N 6 HOH A 51 751 21 HOH HOH . N 6 HOH A 52 752 108 HOH HOH . N 6 HOH A 53 753 77 HOH HOH . N 6 HOH A 54 754 194 HOH HOH . N 6 HOH A 55 755 119 HOH HOH . N 6 HOH A 56 756 25 HOH HOH . N 6 HOH A 57 757 143 HOH HOH . N 6 HOH A 58 758 158 HOH HOH . N 6 HOH A 59 759 33 HOH HOH . N 6 HOH A 60 760 149 HOH HOH . N 6 HOH A 61 761 67 HOH HOH . N 6 HOH A 62 762 69 HOH HOH . N 6 HOH A 63 763 112 HOH HOH . N 6 HOH A 64 764 107 HOH HOH . N 6 HOH A 65 765 52 HOH HOH . N 6 HOH A 66 766 131 HOH HOH . N 6 HOH A 67 767 85 HOH HOH . N 6 HOH A 68 768 200 HOH HOH . N 6 HOH A 69 769 146 HOH HOH . N 6 HOH A 70 770 51 HOH HOH . N 6 HOH A 71 771 34 HOH HOH . N 6 HOH A 72 772 193 HOH HOH . N 6 HOH A 73 773 161 HOH HOH . N 6 HOH A 74 774 172 HOH HOH . N 6 HOH A 75 775 82 HOH HOH . N 6 HOH A 76 776 61 HOH HOH . N 6 HOH A 77 777 130 HOH HOH . N 6 HOH A 78 778 159 HOH HOH . N 6 HOH A 79 779 80 HOH HOH . N 6 HOH A 80 780 127 HOH HOH . N 6 HOH A 81 781 135 HOH HOH . N 6 HOH A 82 782 53 HOH HOH . N 6 HOH A 83 783 162 HOH HOH . N 6 HOH A 84 784 198 HOH HOH . N 6 HOH A 85 785 13 HOH HOH . N 6 HOH A 86 786 191 HOH HOH . N 6 HOH A 87 787 151 HOH HOH . N 6 HOH A 88 788 199 HOH HOH . N 6 HOH A 89 789 55 HOH HOH . N 6 HOH A 90 790 73 HOH HOH . N 6 HOH A 91 791 116 HOH HOH . N 6 HOH A 92 792 145 HOH HOH . N 6 HOH A 93 793 39 HOH HOH . O 6 HOH B 1 701 46 HOH HOH . O 6 HOH B 2 702 4 HOH HOH . O 6 HOH B 3 703 184 HOH HOH . O 6 HOH B 4 704 45 HOH HOH . O 6 HOH B 5 705 99 HOH HOH . O 6 HOH B 6 706 10 HOH HOH . O 6 HOH B 7 707 48 HOH HOH . O 6 HOH B 8 708 16 HOH HOH . O 6 HOH B 9 709 50 HOH HOH . O 6 HOH B 10 710 38 HOH HOH . O 6 HOH B 11 711 68 HOH HOH . O 6 HOH B 12 712 19 HOH HOH . O 6 HOH B 13 713 14 HOH HOH . O 6 HOH B 14 714 87 HOH HOH . O 6 HOH B 15 715 3 HOH HOH . O 6 HOH B 16 716 76 HOH HOH . O 6 HOH B 17 717 91 HOH HOH . O 6 HOH B 18 718 189 HOH HOH . O 6 HOH B 19 719 168 HOH HOH . O 6 HOH B 20 720 114 HOH HOH . O 6 HOH B 21 721 36 HOH HOH . O 6 HOH B 22 722 89 HOH HOH . O 6 HOH B 23 723 70 HOH HOH . O 6 HOH B 24 724 9 HOH HOH . O 6 HOH B 25 725 166 HOH HOH . O 6 HOH B 26 726 100 HOH HOH . O 6 HOH B 27 727 8 HOH HOH . O 6 HOH B 28 728 177 HOH HOH . O 6 HOH B 29 729 86 HOH HOH . O 6 HOH B 30 730 117 HOH HOH . O 6 HOH B 31 731 157 HOH HOH . O 6 HOH B 32 732 1 HOH HOH . O 6 HOH B 33 733 182 HOH HOH . O 6 HOH B 34 734 60 HOH HOH . O 6 HOH B 35 735 176 HOH HOH . O 6 HOH B 36 736 63 HOH HOH . O 6 HOH B 37 737 97 HOH HOH . O 6 HOH B 38 738 64 HOH HOH . O 6 HOH B 39 739 32 HOH HOH . O 6 HOH B 40 740 22 HOH HOH . O 6 HOH B 41 741 125 HOH HOH . O 6 HOH B 42 742 133 HOH HOH . O 6 HOH B 43 743 134 HOH HOH . O 6 HOH B 44 744 155 HOH HOH . O 6 HOH B 45 745 171 HOH HOH . O 6 HOH B 46 746 15 HOH HOH . O 6 HOH B 47 747 24 HOH HOH . O 6 HOH B 48 748 98 HOH HOH . O 6 HOH B 49 749 41 HOH HOH . O 6 HOH B 50 750 96 HOH HOH . O 6 HOH B 51 751 42 HOH HOH . O 6 HOH B 52 752 183 HOH HOH . O 6 HOH B 53 753 81 HOH HOH . O 6 HOH B 54 754 179 HOH HOH . O 6 HOH B 55 755 93 HOH HOH . O 6 HOH B 56 756 59 HOH HOH . O 6 HOH B 57 757 84 HOH HOH . O 6 HOH B 58 758 88 HOH HOH . O 6 HOH B 59 759 103 HOH HOH . O 6 HOH B 60 760 118 HOH HOH . O 6 HOH B 61 761 160 HOH HOH . O 6 HOH B 62 762 121 HOH HOH . O 6 HOH B 63 763 7 HOH HOH . O 6 HOH B 64 764 190 HOH HOH . O 6 HOH B 65 765 95 HOH HOH . O 6 HOH B 66 766 74 HOH HOH . O 6 HOH B 67 767 44 HOH HOH . O 6 HOH B 68 768 164 HOH HOH . O 6 HOH B 69 769 26 HOH HOH . O 6 HOH B 70 770 90 HOH HOH . O 6 HOH B 71 771 152 HOH HOH . O 6 HOH B 72 772 105 HOH HOH . O 6 HOH B 73 773 65 HOH HOH . O 6 HOH B 74 774 58 HOH HOH . O 6 HOH B 75 775 43 HOH HOH . O 6 HOH B 76 776 110 HOH HOH . O 6 HOH B 77 777 11 HOH HOH . O 6 HOH B 78 778 140 HOH HOH . O 6 HOH B 79 779 165 HOH HOH . O 6 HOH B 80 780 23 HOH HOH . O 6 HOH B 81 781 5 HOH HOH . O 6 HOH B 82 782 186 HOH HOH . O 6 HOH B 83 783 123 HOH HOH . O 6 HOH B 84 784 195 HOH HOH . O 6 HOH B 85 785 197 HOH HOH . O 6 HOH B 86 786 56 HOH HOH . O 6 HOH B 87 787 129 HOH HOH . O 6 HOH B 88 788 169 HOH HOH . O 6 HOH B 89 789 139 HOH HOH . O 6 HOH B 90 790 102 HOH HOH . O 6 HOH B 91 791 144 HOH HOH . O 6 HOH B 92 792 154 HOH HOH . O 6 HOH B 93 793 120 HOH HOH . O 6 HOH B 94 794 12 HOH HOH . O 6 HOH B 95 795 66 HOH HOH . O 6 HOH B 96 796 142 HOH HOH . O 6 HOH B 97 797 101 HOH HOH . O 6 HOH B 98 798 156 HOH HOH . O 6 HOH B 99 799 196 HOH HOH . O 6 HOH B 100 800 78 HOH HOH . O 6 HOH B 101 801 132 HOH HOH . O 6 HOH B 102 802 83 HOH HOH . O 6 HOH B 103 803 163 HOH HOH . O 6 HOH B 104 804 54 HOH HOH . O 6 HOH B 105 805 141 HOH HOH . O 6 HOH B 106 806 153 HOH HOH . O 6 HOH B 107 807 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 22.094 -9.045 -15.371 1 63.51 ? C1 EDO 601 A 1 HETATM 2 O O1 EDO . . . G 4 22.674 -10.22 -14.782 1 65.05 ? O1 EDO 601 A 1 HETATM 3 C C2 EDO . . . G 4 23.07 -8.361 -16.331 1 62.09 ? C2 EDO 601 A 1 HETATM 4 O O2 EDO . . . G 4 24.384 -8.246 -15.761 1 60.63 ? O2 EDO 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #