data_5CT7 # _model_server_result.job_id sB61F0WTG0RJ42h1gXaNzQ _model_server_result.datetime_utc '2024-11-22 07:07:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ct7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 5CT7 # _exptl.entry_id 5CT7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 518.414 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methyl-5-({2-[5-(trifluoromethyl)-1H-imidazol-2-yl]pyridin-4-yl}oxy)-N-[4-(trifluoromethyl)phenyl]-1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CT7 _cell.length_a 109.38 _cell.length_b 109.38 _cell.length_c 158.13 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CT7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H16 F6 N6 O' _chem_comp.formula_weight 518.414 _chem_comp.id 55J _chem_comp.mon_nstd_flag . _chem_comp.name 1-methyl-5-({2-[5-(trifluoromethyl)-1H-imidazol-2-yl]pyridin-4-yl}oxy)-N-[4-(trifluoromethyl)phenyl]-1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F4 C24 55J sing 1 n n C24 F5 55J sing 2 n n C24 C22 55J sing 3 n n C24 F6 55J sing 4 n n C21 C22 55J doub 5 n y C21 N5 55J sing 6 n y C22 N6 55J sing 7 n y N5 C12 55J doub 8 n y N6 C12 55J sing 9 n y C12 C10 55J sing 10 n n C10 N1 55J doub 11 n y C10 C11 55J sing 12 n y C4 C3 55J doub 13 n y C4 C5 55J sing 14 n y N1 C9 55J sing 15 n y C11 C7 55J doub 16 n y C3 C2 55J sing 17 n y C9 C8 55J doub 18 n y C7 O1 55J sing 19 n n C7 C8 55J sing 20 n y O1 C5 55J sing 21 n n C5 C6 55J doub 22 n y C14 N3 55J sing 23 n n C2 N3 55J sing 24 n y C2 C1 55J doub 25 n y N3 C13 55J sing 26 n y C6 C1 55J sing 27 n y C1 N2 55J sing 28 n y C13 N2 55J doub 29 n y C13 N4 55J sing 30 n n N4 C15 55J sing 31 n n C15 C20 55J doub 32 n y C15 C16 55J sing 33 n y C20 C19 55J sing 34 n y C16 C17 55J doub 35 n y C19 C18 55J doub 36 n y C17 C18 55J sing 37 n y C18 C23 55J sing 38 n n C23 F2 55J sing 39 n n C23 F1 55J sing 40 n n C23 F3 55J sing 41 n n C3 H1 55J sing 42 n n C11 H2 55J sing 43 n n C14 H3 55J sing 44 n n C14 H4 55J sing 45 n n C14 H5 55J sing 46 n n C16 H6 55J sing 47 n n C17 H7 55J sing 48 n n C19 H8 55J sing 49 n n C20 H9 55J sing 50 n n C21 H10 55J sing 51 n n C4 H11 55J sing 52 n n C6 H12 55J sing 53 n n C8 H13 55J sing 54 n n C9 H14 55J sing 55 n n N4 H15 55J sing 56 n n N6 H17 55J sing 57 n n # _atom_sites.entry_id 5CT7 _atom_sites.fract_transf_matrix[1][1] 0.009142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 55J A 1 801 1 55J LI1 . D 2 55J B 1 801 1 55J LI1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 55J . . . C 2 -19.28 9.437 -8.935 1 54.86 ? C1 55J 801 A 1 HETATM 2 C C2 55J . . . C 2 -19.907 8.738 -9.971 1 55.48 ? C2 55J 801 A 1 HETATM 3 C C3 55J . . . C 2 -19.674 9.025 -11.312 1 54.37 ? C3 55J 801 A 1 HETATM 4 O O1 55J . . . C 2 -17.14 11.635 -10.927 1 58.33 ? O1 55J 801 A 1 HETATM 5 C C11 55J . . . C 2 -16.323 13.774 -11.466 1 65 ? C11 55J 801 A 1 HETATM 6 C C12 55J . . . C 2 -15.402 16.035 -11.922 1 66.51 ? C12 55J 801 A 1 HETATM 7 C C13 55J . . . C 2 -20.608 8.032 -7.992 1 55.43 ? C13 55J 801 A 1 HETATM 8 C C14 55J . . . C 2 -21.705 6.935 -10 1 53.16 ? C14 55J 801 A 1 HETATM 9 C C15 55J . . . C 2 -21.726 7.565 -5.815 1 46.25 ? C15 55J 801 A 1 HETATM 10 C C16 55J . . . C 2 -22.276 6.551 -5.042 1 43.64 ? C16 55J 801 A 1 HETATM 11 C C17 55J . . . C 2 -22.736 6.821 -3.765 1 42.36 ? C17 55J 801 A 1 HETATM 12 C C18 55J . . . C 2 -22.658 8.099 -3.232 1 46.18 ? C18 55J 801 A 1 HETATM 13 C C19 55J . . . C 2 -22.104 9.109 -4.01 1 46.91 ? C19 55J 801 A 1 HETATM 14 C C20 55J . . . C 2 -21.644 8.851 -5.289 1 46.6 ? C20 55J 801 A 1 HETATM 15 C C21 55J . . . C 2 -14.33 17.919 -12.342 1 63.33 ? C21 55J 801 A 1 HETATM 16 C C22 55J . . . C 2 -13.477 16.865 -12.271 1 65.56 ? C22 55J 801 A 1 HETATM 17 C C23 55J . . . C 2 -23.233 8.39 -1.889 1 55.16 ? C23 55J 801 A 1 HETATM 18 C C24 55J . . . C 2 -12.012 16.855 -12.45 1 67.48 ? C24 55J 801 A 1 HETATM 19 C C4 55J . . . C 2 -18.785 10.044 -11.609 1 54.65 ? C4 55J 801 A 1 HETATM 20 C C5 55J . . . C 2 -18.134 10.729 -10.581 1 54.64 ? C5 55J 801 A 1 HETATM 21 C C6 55J . . . C 2 -18.367 10.449 -9.236 1 51.92 ? C6 55J 801 A 1 HETATM 22 C C7 55J . . . C 2 -17.408 12.99 -11.106 1 63.01 ? C7 55J 801 A 1 HETATM 23 C C8 55J . . . C 2 -18.652 13.572 -10.922 1 65.43 ? C8 55J 801 A 1 HETATM 24 C C9 55J . . . C 2 -18.754 14.936 -11.121 1 67.74 ? C9 55J 801 A 1 HETATM 25 N N1 55J . . . C 2 -17.724 15.725 -11.474 1 68.49 ? N1 55J 801 A 1 HETATM 26 C C10 55J . . . C 2 -16.526 15.138 -11.628 1 66.56 ? C10 55J 801 A 1 HETATM 27 N N2 55J . . . C 2 -19.744 8.984 -7.695 1 57 ? N2 55J 801 A 1 HETATM 28 N N3 55J . . . C 2 -20.762 7.84 -9.345 1 55.41 ? N3 55J 801 A 1 HETATM 29 N N4 55J . . . C 2 -21.29 7.244 -7.119 1 49.5 ? N4 55J 801 A 1 HETATM 30 N N5 55J . . . C 2 -15.576 17.424 -12.129 1 63.99 ? N5 55J 801 A 1 HETATM 31 N N6 55J . . . C 2 -14.125 15.686 -12.008 1 67.75 ? N6 55J 801 A 1 HETATM 32 F F1 55J . . . C 2 -23.082 9.649 -1.475 1 61.41 ? F1 55J 801 A 1 HETATM 33 F F2 55J . . . C 2 -24.51 8.144 -1.853 1 61.5 ? F2 55J 801 A 1 HETATM 34 F F3 55J . . . C 2 -22.719 7.659 -0.942 1 53.46 ? F3 55J 801 A 1 HETATM 35 F F4 55J . . . C 2 -11.66 16.349 -13.615 1 61.63 ? F4 55J 801 A 1 HETATM 36 F F5 55J . . . C 2 -11.483 18.067 -12.355 1 68.77 ? F5 55J 801 A 1 HETATM 37 F F6 55J . . . C 2 -11.413 16.103 -11.541 1 76.15 ? F6 55J 801 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #