data_5CT7
#
_model_server_result.job_id            FCgmLX0QCI7o490p5U4R6w 
_model_server_result.datetime_utc      '2024-11-22 07:10:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ct7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    5CT7 
#
_exptl.entry_id    5CT7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              518.414 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-methyl-5-({2-[5-(trifluoromethyl)-1H-imidazol-2-yl]pyridin-4-yl}oxy)-N-[4-(trifluoromethyl)phenyl]-1H-benzimidazol-2-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CT7 
_cell.length_a            109.38 
_cell.length_b            109.38 
_cell.length_c            158.13 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CT7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C24 H16 F6 N6 O' 
_chem_comp.formula_weight    518.414 
_chem_comp.id                55J 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-methyl-5-({2-[5-(trifluoromethyl)-1H-imidazol-2-yl]pyridin-4-yl}oxy)-N-[4-(trifluoromethyl)phenyl]-1H-benzimidazol-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F4 C24 55J sing 1 n n 
C24 F5 55J sing 2 n n 
C24 C22 55J sing 3 n n 
C24 F6 55J sing 4 n n 
C21 C22 55J doub 5 n y 
C21 N5 55J sing 6 n y 
C22 N6 55J sing 7 n y 
N5 C12 55J doub 8 n y 
N6 C12 55J sing 9 n y 
C12 C10 55J sing 10 n n 
C10 N1 55J doub 11 n y 
C10 C11 55J sing 12 n y 
C4 C3 55J doub 13 n y 
C4 C5 55J sing 14 n y 
N1 C9 55J sing 15 n y 
C11 C7 55J doub 16 n y 
C3 C2 55J sing 17 n y 
C9 C8 55J doub 18 n y 
C7 O1 55J sing 19 n n 
C7 C8 55J sing 20 n y 
O1 C5 55J sing 21 n n 
C5 C6 55J doub 22 n y 
C14 N3 55J sing 23 n n 
C2 N3 55J sing 24 n y 
C2 C1 55J doub 25 n y 
N3 C13 55J sing 26 n y 
C6 C1 55J sing 27 n y 
C1 N2 55J sing 28 n y 
C13 N2 55J doub 29 n y 
C13 N4 55J sing 30 n n 
N4 C15 55J sing 31 n n 
C15 C20 55J doub 32 n y 
C15 C16 55J sing 33 n y 
C20 C19 55J sing 34 n y 
C16 C17 55J doub 35 n y 
C19 C18 55J doub 36 n y 
C17 C18 55J sing 37 n y 
C18 C23 55J sing 38 n n 
C23 F2 55J sing 39 n n 
C23 F1 55J sing 40 n n 
C23 F3 55J sing 41 n n 
C3 H1 55J sing 42 n n 
C11 H2 55J sing 43 n n 
C14 H3 55J sing 44 n n 
C14 H4 55J sing 45 n n 
C14 H5 55J sing 46 n n 
C16 H6 55J sing 47 n n 
C17 H7 55J sing 48 n n 
C19 H8 55J sing 49 n n 
C20 H9 55J sing 50 n n 
C21 H10 55J sing 51 n n 
C4 H11 55J sing 52 n n 
C6 H12 55J sing 53 n n 
C8 H13 55J sing 54 n n 
C9 H14 55J sing 55 n n 
N4 H15 55J sing 56 n n 
N6 H17 55J sing 57 n n 
#
_atom_sites.entry_id                     5CT7 
_atom_sites.fract_transf_matrix[1][1]    0.009142 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009142 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006324 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 55J A 1 801 1 55J LI1 . 
D 2 55J B 1 801 1 55J LI1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 55J . . . D 2 -40.454 25.899 -4.905 1 54.59 ? C1 55J 801 B 1 
HETATM 2 C C2 55J . . . D 2 -40.955 25.03 -3.933 1 53.47 ? C2 55J 801 B 1 
HETATM 3 C C3 55J . . . D 2 -40.797 25.262 -2.574 1 52.84 ? C3 55J 801 B 1 
HETATM 4 O O1 55J . . . D 2 -38.981 28.45 -2.748 1 62.49 ? O1 55J 801 B 1 
HETATM 5 C C11 55J . . . D 2 -37.131 29.698 -1.959 1 65.75 ? C11 55J 801 B 1 
HETATM 6 C C12 55J . . . D 2 -35.162 31.096 -1.371 1 68.24 ? C12 55J 801 B 1 
HETATM 7 C C13 55J . . . D 2 -41.327 24.251 -5.97 1 57.72 ? C13 55J 801 B 1 
HETATM 8 C C14 55J . . . D 2 -42.109 22.781 -4.044 1 58.24 ? C14 55J 801 B 1 
HETATM 9 C C15 55J . . . D 2 -41.398 23.194 -8.24 1 55.34 ? C15 55J 801 B 1 
HETATM 10 C C16 55J . . . D 2 -42.264 22.501 -9.079 1 55.73 ? C16 55J 801 B 1 
HETATM 11 C C17 55J . . . D 2 -41.873 22.165 -10.364 1 53.29 ? C17 55J 801 B 1 
HETATM 12 C C18 55J . . . D 2 -40.619 22.514 -10.843 1 54.08 ? C18 55J 801 B 1 
HETATM 13 C C19 55J . . . D 2 -39.756 23.209 -10.003 1 53.9 ? C19 55J 801 B 1 
HETATM 14 C C20 55J . . . D 2 -40.14 23.555 -8.717 1 55.06 ? C20 55J 801 B 1 
HETATM 15 C C21 55J . . . D 2 -33.605 32.512 -0.73 1 67.34 ? C21 55J 801 B 1 
HETATM 16 C C22 55J . . . D 2 -34.802 33.13 -0.886 1 69.52 ? C22 55J 801 B 1 
HETATM 17 C C23 55J . . . D 2 -40.211 22.163 -12.235 1 60.5 ? C23 55J 801 B 1 
HETATM 18 C C24 55J . . . D 2 -35.108 34.549 -0.632 1 73.44 ? C24 55J 801 B 1 
HETATM 19 C C4 55J . . . D 2 -40.091 26.391 -2.189 1 55.27 ? C4 55J 801 B 1 
HETATM 20 C C5 55J . . . D 2 -39.597 27.27 -3.154 1 56.81 ? C5 55J 801 B 1 
HETATM 21 C C6 55J . . . D 2 -39.773 27.053 -4.517 1 52.81 ? C6 55J 801 B 1 
HETATM 22 C C7 55J . . . D 2 -37.617 28.503 -2.464 1 66.2 ? C7 55J 801 B 1 
HETATM 23 C C8 55J . . . D 2 -36.748 27.456 -2.726 1 69.57 ? C8 55J 801 B 1 
HETATM 24 C C9 55J . . . D 2 -35.407 27.657 -2.46 1 71.25 ? C9 55J 801 B 1 
HETATM 25 N N1 55J . . . D 2 -34.901 28.805 -1.982 1 71.12 ? N1 55J 801 B 1 
HETATM 26 C C10 55J . . . D 2 -35.761 29.813 -1.759 1 68.48 ? C10 55J 801 B 1 
HETATM 27 N N2 55J . . . D 2 -40.689 25.383 -6.185 1 57.64 ? N2 55J 801 B 1 
HETATM 28 N N3 55J . . . D 2 -41.504 23.975 -4.631 1 56.94 ? N3 55J 801 B 1 
HETATM 29 N N4 55J . . . D 2 -41.844 23.423 -6.917 1 54.8 ? N4 55J 801 B 1 
HETATM 30 N N5 55J . . . D 2 -33.803 31.209 -1.029 1 66.58 ? N5 55J 801 B 1 
HETATM 31 N N6 55J . . . D 2 -35.785 32.264 -1.29 1 68.97 ? N6 55J 801 B 1 
HETATM 32 F F1 55J . . . D 2 -39.466 21.099 -12.279 1 65.11 ? F1 55J 801 B 1 
HETATM 33 F F2 55J . . . D 2 -41.198 21.858 -13.03 1 61.18 ? F2 55J 801 B 1 
HETATM 34 F F3 55J . . . D 2 -39.57 23.145 -12.852 1 62.58 ? F3 55J 801 B 1 
HETATM 35 F F4 55J . . . D 2 -36.163 34.672 0.172 1 74.03 ? F4 55J 801 B 1 
HETATM 36 F F5 55J . . . D 2 -34.088 35.209 -0.073 1 72.7 ? F5 55J 801 B 1 
HETATM 37 F F6 55J . . . D 2 -35.372 35.201 -1.75 1 77.22 ? F6 55J 801 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           37 
#