data_5CTH # _model_server_result.job_id '_q0mS9gMSUDZfIpupaOPEg' _model_server_result.datetime_utc '2024-12-18 04:20:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 5CTH # _exptl.entry_id 5CTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CTH _cell.length_a 89.98 _cell.length_b 95.49 _cell.length_c 150.51 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C18 H38 O9' _chem_comp.formula_weight 398.489 _chem_comp.id PE5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C50 PE5 sing 311 n n C48 H481 PE5 sing 312 n n C48 H482 PE5 sing 313 n n C48 H483 PE5 sing 314 n n C50 O1 PE5 sing 315 n n C50 H501 PE5 sing 316 n n C50 H502 PE5 sing 317 n n O1 C1 PE5 sing 318 n n C1 C2 PE5 sing 319 n n C1 H11 PE5 sing 320 n n C1 H12 PE5 sing 321 n n C2 O2 PE5 sing 322 n n C2 H21 PE5 sing 323 n n C2 H22 PE5 sing 324 n n O2 C3 PE5 sing 325 n n C3 C4 PE5 sing 326 n n C3 H31 PE5 sing 327 n n C3 H32 PE5 sing 328 n n C4 O3 PE5 sing 329 n n C4 H41 PE5 sing 330 n n C4 H42 PE5 sing 331 n n O3 C5 PE5 sing 332 n n C5 C6 PE5 sing 333 n n C5 H51 PE5 sing 334 n n C5 H52A PE5 sing 335 n n C6 O4 PE5 sing 336 n n C6 H61 PE5 sing 337 n n C6 H62 PE5 sing 338 n n O4 C7 PE5 sing 339 n n C7 C8 PE5 sing 340 n n C7 H71 PE5 sing 341 n n C7 H72 PE5 sing 342 n n C8 O5 PE5 sing 343 n n C8 H81 PE5 sing 344 n n C8 H82 PE5 sing 345 n n O5 C9 PE5 sing 346 n n C9 C10 PE5 sing 347 n n C9 H91 PE5 sing 348 n n C9 H92 PE5 sing 349 n n C10 O6 PE5 sing 350 n n C10 H101 PE5 sing 351 n n C10 H102 PE5 sing 352 n n O6 C11 PE5 sing 353 n n C11 C12 PE5 sing 354 n n C11 H111 PE5 sing 355 n n C11 H112 PE5 sing 356 n n C12 O7 PE5 sing 357 n n C12 H121 PE5 sing 358 n n C12 H122 PE5 sing 359 n n O7 C13 PE5 sing 360 n n C13 C14 PE5 sing 361 n n C13 H131 PE5 sing 362 n n C13 H132 PE5 sing 363 n n C14 O8 PE5 sing 364 n n C14 H141 PE5 sing 365 n n C14 H142 PE5 sing 366 n n O8 C15 PE5 sing 367 n n C15 C16 PE5 sing 368 n n C15 H151 PE5 sing 369 n n C15 H152 PE5 sing 370 n n C16 O52 PE5 sing 371 n n C16 H161 PE5 sing 372 n n C16 H162 PE5 sing 373 n n O52 H52 PE5 sing 374 n n # _atom_sites.entry_id 5CTH _atom_sites.fract_transf_matrix[1][1] 0.011114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PE5 A 1 301 302 PE5 PE5 . E 2 PE5 A 1 302 304 PE5 PE5 . F 3 MES A 1 303 401 MES MES . G 4 BNG B 1 301 802 BNG BNG . H 2 PE5 B 1 302 301 PE5 PE5 . I 2 PE5 C 1 301 303 PE5 PE5 . J 2 PE5 C 1 302 305 PE5 PE5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C50 PE5 . . . J 2 -2.224 2.55 69.418 1 115.04 ? C50 PE5 302 C 1 HETATM 2 O O1 PE5 . . . J 2 -2.51 1.355 70.135 1 120.21 ? O1 PE5 302 C 1 HETATM 3 C C1 PE5 . . . J 2 -1.372 0.771 70.78 1 122.41 ? C1 PE5 302 C 1 HETATM 4 C C2 PE5 . . . J 2 -1.754 -0.626 71.377 1 100.62 ? C2 PE5 302 C 1 HETATM 5 O O2 PE5 . . . J 2 -1.124 -1.665 70.609 1 106.34 ? O2 PE5 302 C 1 HETATM 6 C C3 PE5 . . . J 2 -0.627 -2.804 71.35 1 109.74 ? C3 PE5 302 C 1 HETATM 7 C C4 PE5 . . . J 2 -1.35 -4.074 70.869 1 114.06 ? C4 PE5 302 C 1 HETATM 8 O O3 PE5 . . . J 2 -2.438 -3.688 70.017 1 119.69 ? O3 PE5 302 C 1 HETATM 9 C C5 PE5 . . . J 2 -3.104 -4.746 69.403 1 125.85 ? C5 PE5 302 C 1 HETATM 10 C C6 PE5 . . . J 2 -2.143 -5.516 68.494 1 131.07 ? C6 PE5 302 C 1 HETATM 11 O O4 PE5 . . . J 2 -2.821 -5.89 67.285 1 133.35 ? O4 PE5 302 C 1 HETATM 12 C C7 PE5 . . . J 2 -3.991 -6.647 67.503 1 137.76 ? C7 PE5 302 C 1 HETATM 13 C C8 PE5 . . . J 2 -4.79 -6.769 66.205 1 139.48 ? C8 PE5 302 C 1 HETATM 14 O O5 PE5 . . . J 2 -6.171 -6.516 66.457 1 144.39 ? O5 PE5 302 C 1 HETATM 15 C C9 PE5 . . . J 2 -6.905 -6.102 65.287 1 156.94 ? C9 PE5 302 C 1 HETATM 16 C C10 PE5 . . . J 2 -8.305 -6.67 65.296 1 167.33 ? C10 PE5 302 C 1 HETATM 17 O O6 PE5 . . . J 2 -8.821 -6.716 66.635 1 175.18 ? O6 PE5 302 C 1 HETATM 18 C C11 PE5 . . . J 2 -9.596 -7.886 66.949 1 179.66 ? C11 PE5 302 C 1 HETATM 19 C C12 PE5 . . . J 2 -8.667 -9.17 67.033 1 191.58 ? C12 PE5 302 C 1 HETATM 20 O O7 PE5 . . . J 2 -7.604 -8.967 67.927 1 187.44 ? O7 PE5 302 C 1 HETATM 21 C C13 PE5 . . . J 2 -7.142 -10.117 68.608 1 183.66 ? C13 PE5 302 C 1 HETATM 22 C C14 PE5 . . . J 2 -7.436 -11.422 67.804 1 151.82 ? C14 PE5 302 C 1 HETATM 23 O O8 PE5 . . . J 2 -6.202 -12.153 67.534 1 153.98 ? O8 PE5 302 C 1 HETATM 24 C C15 PE5 . . . J 2 -5.256 -12.19 68.636 1 154.8 ? C15 PE5 302 C 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 76 _model_server_stats.query_time_ms 2313 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 24 #