data_5CTI # _model_server_result.job_id fXCkCL_hNt52vzm0AbQfqg _model_server_result.datetime_utc '2024-12-26 10:20:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":102}' # _entry.id 5CTI # _exptl.entry_id 5CTI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.35 _cell.angle_gamma 90 _cell.entry_id 5CTI _cell.length_a 27.777 _cell.length_b 55.912 _cell.length_c 61.66 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CTI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 48 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 48 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 48 _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 48 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.043 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5CTI _atom_sites.fract_transf_matrix[1][1] 0.036001 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001479 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL B 1 101 1 GOL GOL . E 4 GOL C 1 101 2 GOL GOL . F 4 GOL C 1 102 3 GOL GOL . G 5 HOH A 1 101 57 HOH HOH . G 5 HOH A 2 102 46 HOH HOH . G 5 HOH A 3 103 131 HOH HOH . G 5 HOH A 4 104 67 HOH HOH . G 5 HOH A 5 105 1 HOH HOH . G 5 HOH A 6 106 17 HOH HOH . G 5 HOH A 7 107 53 HOH HOH . G 5 HOH A 8 108 111 HOH HOH . G 5 HOH A 9 109 121 HOH HOH . G 5 HOH A 10 110 71 HOH HOH . G 5 HOH A 11 111 50 HOH HOH . G 5 HOH A 12 112 64 HOH HOH . G 5 HOH A 13 113 135 HOH HOH . G 5 HOH A 14 114 23 HOH HOH . G 5 HOH A 15 115 35 HOH HOH . G 5 HOH A 16 116 144 HOH HOH . G 5 HOH A 17 117 33 HOH HOH . G 5 HOH A 18 118 30 HOH HOH . G 5 HOH A 19 119 143 HOH HOH . G 5 HOH A 20 120 87 HOH HOH . G 5 HOH A 21 121 2 HOH HOH . G 5 HOH A 22 122 75 HOH HOH . G 5 HOH A 23 123 8 HOH HOH . G 5 HOH A 24 124 59 HOH HOH . G 5 HOH A 25 125 65 HOH HOH . G 5 HOH A 26 126 106 HOH HOH . G 5 HOH A 27 127 6 HOH HOH . G 5 HOH A 28 128 7 HOH HOH . G 5 HOH A 29 129 14 HOH HOH . G 5 HOH A 30 130 58 HOH HOH . G 5 HOH A 31 131 133 HOH HOH . G 5 HOH A 32 132 54 HOH HOH . G 5 HOH A 33 133 85 HOH HOH . G 5 HOH A 34 134 92 HOH HOH . G 5 HOH A 35 135 122 HOH HOH . G 5 HOH A 36 136 124 HOH HOH . G 5 HOH A 37 137 125 HOH HOH . G 5 HOH A 38 138 12 HOH HOH . G 5 HOH A 39 139 126 HOH HOH . G 5 HOH A 40 140 69 HOH HOH . H 5 HOH B 1 201 108 HOH HOH . H 5 HOH B 2 202 77 HOH HOH . H 5 HOH B 3 203 80 HOH HOH . H 5 HOH B 4 204 44 HOH HOH . H 5 HOH B 5 205 73 HOH HOH . H 5 HOH B 6 206 16 HOH HOH . H 5 HOH B 7 207 15 HOH HOH . H 5 HOH B 8 208 25 HOH HOH . H 5 HOH B 9 209 5 HOH HOH . H 5 HOH B 10 210 119 HOH HOH . H 5 HOH B 11 211 101 HOH HOH . H 5 HOH B 12 212 28 HOH HOH . H 5 HOH B 13 213 20 HOH HOH . H 5 HOH B 14 214 103 HOH HOH . H 5 HOH B 15 215 129 HOH HOH . H 5 HOH B 16 216 78 HOH HOH . H 5 HOH B 17 217 27 HOH HOH . H 5 HOH B 18 218 55 HOH HOH . H 5 HOH B 19 219 134 HOH HOH . H 5 HOH B 20 220 83 HOH HOH . H 5 HOH B 21 221 18 HOH HOH . H 5 HOH B 22 222 48 HOH HOH . H 5 HOH B 23 223 63 HOH HOH . H 5 HOH B 24 224 104 HOH HOH . H 5 HOH B 25 225 43 HOH HOH . H 5 HOH B 26 226 21 HOH HOH . H 5 HOH B 27 227 31 HOH HOH . H 5 HOH B 28 228 10 HOH HOH . H 5 HOH B 29 229 96 HOH HOH . H 5 HOH B 30 230 84 HOH HOH . H 5 HOH B 31 231 141 HOH HOH . H 5 HOH B 32 232 90 HOH HOH . H 5 HOH B 33 233 37 HOH HOH . H 5 HOH B 34 234 140 HOH HOH . H 5 HOH B 35 235 89 HOH HOH . H 5 HOH B 36 236 39 HOH HOH . H 5 HOH B 37 237 41 HOH HOH . H 5 HOH B 38 238 139 HOH HOH . H 5 HOH B 39 239 74 HOH HOH . H 5 HOH B 40 240 82 HOH HOH . H 5 HOH B 41 241 79 HOH HOH . H 5 HOH B 42 242 113 HOH HOH . H 5 HOH B 43 243 105 HOH HOH . H 5 HOH B 44 244 56 HOH HOH . H 5 HOH B 45 245 94 HOH HOH . H 5 HOH B 46 246 107 HOH HOH . H 5 HOH B 47 247 115 HOH HOH . H 5 HOH B 48 248 118 HOH HOH . H 5 HOH B 49 249 100 HOH HOH . H 5 HOH B 50 250 93 HOH HOH . H 5 HOH B 51 251 142 HOH HOH . I 5 HOH C 1 201 95 HOH HOH . I 5 HOH C 2 202 138 HOH HOH . I 5 HOH C 3 203 19 HOH HOH . I 5 HOH C 4 204 88 HOH HOH . I 5 HOH C 5 205 132 HOH HOH . I 5 HOH C 6 206 51 HOH HOH . I 5 HOH C 7 207 34 HOH HOH . I 5 HOH C 8 208 36 HOH HOH . I 5 HOH C 9 209 52 HOH HOH . I 5 HOH C 10 210 22 HOH HOH . I 5 HOH C 11 211 32 HOH HOH . I 5 HOH C 12 212 49 HOH HOH . I 5 HOH C 13 213 102 HOH HOH . I 5 HOH C 14 214 38 HOH HOH . I 5 HOH C 15 215 45 HOH HOH . I 5 HOH C 16 216 3 HOH HOH . I 5 HOH C 17 217 4 HOH HOH . I 5 HOH C 18 218 109 HOH HOH . I 5 HOH C 19 219 26 HOH HOH . I 5 HOH C 20 220 81 HOH HOH . I 5 HOH C 21 221 72 HOH HOH . I 5 HOH C 22 222 112 HOH HOH . I 5 HOH C 23 223 114 HOH HOH . I 5 HOH C 24 224 11 HOH HOH . I 5 HOH C 25 225 68 HOH HOH . I 5 HOH C 26 226 13 HOH HOH . I 5 HOH C 27 227 110 HOH HOH . I 5 HOH C 28 228 128 HOH HOH . I 5 HOH C 29 229 62 HOH HOH . I 5 HOH C 30 230 47 HOH HOH . I 5 HOH C 31 231 24 HOH HOH . I 5 HOH C 32 232 40 HOH HOH . I 5 HOH C 33 233 66 HOH HOH . I 5 HOH C 34 234 9 HOH HOH . I 5 HOH C 35 235 123 HOH HOH . I 5 HOH C 36 236 116 HOH HOH . I 5 HOH C 37 237 137 HOH HOH . I 5 HOH C 38 238 127 HOH HOH . I 5 HOH C 39 239 76 HOH HOH . I 5 HOH C 40 240 117 HOH HOH . I 5 HOH C 41 241 99 HOH HOH . I 5 HOH C 42 242 70 HOH HOH . I 5 HOH C 43 243 61 HOH HOH . I 5 HOH C 44 244 136 HOH HOH . I 5 HOH C 45 245 42 HOH HOH . I 5 HOH C 46 246 145 HOH HOH . I 5 HOH C 47 247 97 HOH HOH . I 5 HOH C 48 248 29 HOH HOH . I 5 HOH C 49 249 130 HOH HOH . I 5 HOH C 50 250 120 HOH HOH . I 5 HOH C 51 251 86 HOH HOH . I 5 HOH C 52 252 60 HOH HOH . I 5 HOH C 53 253 98 HOH HOH . I 5 HOH C 54 254 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 0.11 -1.885 -41.256 1 39.19 ? C1 GOL 102 C 1 HETATM 2 O O1 GOL . . . F 4 0.617 -3.132 -40.738 1 27.45 ? O1 GOL 102 C 1 HETATM 3 C C2 GOL . . . F 4 -1.133 -1.339 -40.527 1 31.08 ? C2 GOL 102 C 1 HETATM 4 O O2 GOL . . . F 4 -2.002 -2.435 -40.364 1 39.17 ? O2 GOL 102 C 1 HETATM 5 C C3 GOL . . . F 4 -0.82 -0.619 -39.197 1 46.25 ? C3 GOL 102 C 1 HETATM 6 O O3 GOL . . . F 4 -1.875 0.066 -38.515 1 38.97 ? O3 GOL 102 C 1 HETATM 7 H H11 GOL . . . F 4 0.901 -1.138 -41.204 1 47.03 ? H11 GOL 102 C 1 HETATM 8 H H12 GOL . . . F 4 -0.136 -2.02 -42.31 1 47.03 ? H12 GOL 102 C 1 HETATM 9 H HO1 GOL . . . F 4 1.361 -3.44 -41.296 1 32.94 ? HO1 GOL 102 C 1 HETATM 10 H H2 GOL . . . F 4 -1.608 -0.613 -41.187 1 37.29 ? H2 GOL 102 C 1 HETATM 11 H HO2 GOL . . . F 4 -1.598 -3.083 -39.75 1 47 ? HO2 GOL 102 C 1 HETATM 12 H H31 GOL . . . F 4 -0.406 -1.357 -38.51 1 55.5 ? H31 GOL 102 C 1 HETATM 13 H H32 GOL . . . F 4 -0.026 0.102 -39.389 1 55.5 ? H32 GOL 102 C 1 HETATM 14 H HO3 GOL . . . F 4 -2.688 -0.48 -38.539 1 46.76 ? HO3 GOL 102 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #