data_5CTS # _model_server_result.job_id lLdjmJbBUkQFRsoqykACZg _model_server_result.datetime_utc '2024-10-16 10:38:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cts # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":700}' # _entry.id 5CTS # _exptl.entry_id 5CTS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 825.57 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CARBOXYMETHYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 78.9 _cell.angle_gamma 90 _cell.entry_id 5CTS _cell.length_a 104 _cell.length_b 78.1 _cell.length_c 58.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CTS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H38 N7 O18 P3 S' _chem_comp.formula_weight 825.57 _chem_comp.id CMC _chem_comp.mon_nstd_flag . _chem_comp.name 'CARBOXYMETHYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A CMC sing 70 n y N1A C6A CMC doub 71 n y C2A N3A CMC doub 72 n y C2A H2A CMC sing 73 n n N3A C4A CMC sing 74 n y C4A C5A CMC doub 75 n y C4A N9A CMC sing 76 n y C5A C6A CMC sing 77 n y C5A N7A CMC sing 78 n y C6A N6A CMC sing 79 n n N6A H61A CMC sing 80 n n N6A H62A CMC sing 81 n n N7A C8A CMC doub 82 n y C8A N9A CMC sing 83 n y C8A H8A CMC sing 84 n n N9A C1B CMC sing 85 n n C1B C2B CMC sing 86 n n C1B O4B CMC sing 87 n n C1B H1B CMC sing 88 n n C2B O2B CMC sing 89 n n C2B C3B CMC sing 90 n n C2B H2B CMC sing 91 n n O2B HO2A CMC sing 92 n n C3B O3B CMC sing 93 n n C3B C4B CMC sing 94 n n C3B H3B CMC sing 95 n n O3B P3B CMC sing 96 n n P3B O7A CMC doub 97 n n P3B O8A CMC sing 98 n n P3B O9A CMC sing 99 n n O8A HOA8 CMC sing 100 n n O9A HOA9 CMC sing 101 n n C4B O4B CMC sing 102 n n C4B C5B CMC sing 103 n n C4B H4B CMC sing 104 n n C5B O5B CMC sing 105 n n C5B H51A CMC sing 106 n n C5B H52A CMC sing 107 n n O5B P1A CMC sing 108 n n P1A O1A CMC doub 109 n n P1A O2A CMC sing 110 n n P1A O3A CMC sing 111 n n O2A HOA2 CMC sing 112 n n O3A P2A CMC sing 113 n n P2A O4A CMC doub 114 n n P2A O5A CMC sing 115 n n P2A O6A CMC sing 116 n n O5A HOA5 CMC sing 117 n n O6A CCP CMC sing 118 n n CBP CCP CMC sing 119 n n CBP CDP CMC sing 120 n n CBP CEP CMC sing 121 n n CBP CAP CMC sing 122 n n CCP H121 CMC sing 123 n n CCP H122 CMC sing 124 n n CDP H131 CMC sing 125 n n CDP H132 CMC sing 126 n n CDP H133 CMC sing 127 n n CEP H141 CMC sing 128 n n CEP H142 CMC sing 129 n n CEP H143 CMC sing 130 n n CAP OAP CMC sing 131 n n CAP C9P CMC sing 132 n n CAP H10 CMC sing 133 n n OAP HO1 CMC sing 134 n n C9P O9P CMC doub 135 n n C9P N8P CMC sing 136 n n N8P C7P CMC sing 137 n n N8P HN8 CMC sing 138 n n C7P C6P CMC sing 139 n n C7P H71 CMC sing 140 n n C7P H72 CMC sing 141 n n C6P C5P CMC sing 142 n n C6P H61 CMC sing 143 n n C6P H62 CMC sing 144 n n C5P O5P CMC doub 145 n n C5P N4P CMC sing 146 n n N4P C3P CMC sing 147 n n N4P HN4 CMC sing 148 n n C3P C2P CMC sing 149 n n C3P H31 CMC sing 150 n n C3P H32 CMC sing 151 n n C2P S1P CMC sing 152 n n C2P H21 CMC sing 153 n n C2P H22 CMC sing 154 n n S1P C1 CMC sing 155 n n C1 C2 CMC sing 156 n n C1 H11 CMC sing 157 n n C1 H12 CMC sing 158 n n C2 O21 CMC doub 159 n n C2 O22 CMC sing 160 n n O22 HO22 CMC sing 161 n n # _atom_sites.entry_id 5CTS _atom_sites.fract_transf_matrix[1][1] 0.009615 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.001886 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OAA A 1 702 702 OAA OAA . C 3 CMC A 1 700 700 CMC CMC . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 505 505 HOH HOH . D 4 HOH A 6 506 506 HOH HOH . D 4 HOH A 7 507 507 HOH HOH . D 4 HOH A 8 508 508 HOH HOH . D 4 HOH A 9 509 509 HOH HOH . D 4 HOH A 10 510 510 HOH HOH . D 4 HOH A 11 511 511 HOH HOH . D 4 HOH A 12 512 512 HOH HOH . D 4 HOH A 13 513 513 HOH HOH . D 4 HOH A 14 514 514 HOH HOH . D 4 HOH A 15 515 515 HOH HOH . D 4 HOH A 16 516 516 HOH HOH . D 4 HOH A 17 517 517 HOH HOH . D 4 HOH A 18 518 518 HOH HOH . D 4 HOH A 19 519 519 HOH HOH . D 4 HOH A 20 520 520 HOH HOH . D 4 HOH A 21 521 521 HOH HOH . D 4 HOH A 22 522 522 HOH HOH . D 4 HOH A 23 523 523 HOH HOH . D 4 HOH A 24 524 524 HOH HOH . D 4 HOH A 25 526 526 HOH HOH . D 4 HOH A 26 527 527 HOH HOH . D 4 HOH A 27 528 528 HOH HOH . D 4 HOH A 28 529 529 HOH HOH . D 4 HOH A 29 530 530 HOH HOH . D 4 HOH A 30 531 531 HOH HOH . D 4 HOH A 31 532 532 HOH HOH . D 4 HOH A 32 533 533 HOH HOH . D 4 HOH A 33 534 534 HOH HOH . D 4 HOH A 34 535 535 HOH HOH . D 4 HOH A 35 536 536 HOH HOH . D 4 HOH A 36 537 537 HOH HOH . D 4 HOH A 37 538 538 HOH HOH . D 4 HOH A 38 539 539 HOH HOH . D 4 HOH A 39 540 540 HOH HOH . D 4 HOH A 40 541 541 HOH HOH . D 4 HOH A 41 542 542 HOH HOH . D 4 HOH A 42 543 543 HOH HOH . D 4 HOH A 43 544 544 HOH HOH . D 4 HOH A 44 545 545 HOH HOH . D 4 HOH A 45 546 546 HOH HOH . D 4 HOH A 46 547 547 HOH HOH . D 4 HOH A 47 548 548 HOH HOH . D 4 HOH A 48 549 549 HOH HOH . D 4 HOH A 49 550 550 HOH HOH . D 4 HOH A 50 554 554 HOH HOH . D 4 HOH A 51 555 555 HOH HOH . D 4 HOH A 52 556 556 HOH HOH . D 4 HOH A 53 557 557 HOH HOH . D 4 HOH A 54 558 558 HOH HOH . D 4 HOH A 55 559 559 HOH HOH . D 4 HOH A 56 560 560 HOH HOH . D 4 HOH A 57 561 561 HOH HOH . D 4 HOH A 58 562 562 HOH HOH . D 4 HOH A 59 563 563 HOH HOH . D 4 HOH A 60 564 564 HOH HOH . D 4 HOH A 61 565 565 HOH HOH . D 4 HOH A 62 566 566 HOH HOH . D 4 HOH A 63 567 567 HOH HOH . D 4 HOH A 64 568 568 HOH HOH . D 4 HOH A 65 569 569 HOH HOH . D 4 HOH A 66 570 570 HOH HOH . D 4 HOH A 67 571 571 HOH HOH . D 4 HOH A 68 572 572 HOH HOH . D 4 HOH A 69 573 573 HOH HOH . D 4 HOH A 70 574 574 HOH HOH . D 4 HOH A 71 575 575 HOH HOH . D 4 HOH A 72 577 577 HOH HOH . D 4 HOH A 73 578 578 HOH HOH . D 4 HOH A 74 579 579 HOH HOH . D 4 HOH A 75 580 580 HOH HOH . D 4 HOH A 76 581 581 HOH HOH . D 4 HOH A 77 582 582 HOH HOH . D 4 HOH A 78 583 583 HOH HOH . D 4 HOH A 79 584 584 HOH HOH . D 4 HOH A 80 585 585 HOH HOH . D 4 HOH A 81 586 586 HOH HOH . D 4 HOH A 82 587 587 HOH HOH . D 4 HOH A 83 588 588 HOH HOH . D 4 HOH A 84 589 589 HOH HOH . D 4 HOH A 85 590 590 HOH HOH . D 4 HOH A 86 591 591 HOH HOH . D 4 HOH A 87 592 592 HOH HOH . D 4 HOH A 88 593 593 HOH HOH . D 4 HOH A 89 594 594 HOH HOH . D 4 HOH A 90 595 595 HOH HOH . D 4 HOH A 91 596 596 HOH HOH . D 4 HOH A 92 597 597 HOH HOH . D 4 HOH A 93 598 598 HOH HOH . D 4 HOH A 94 599 599 HOH HOH . D 4 HOH A 95 600 600 HOH HOH . D 4 HOH A 96 601 601 HOH HOH . D 4 HOH A 97 602 602 HOH HOH . D 4 HOH A 98 603 603 HOH HOH . D 4 HOH A 99 604 604 HOH HOH . D 4 HOH A 100 605 605 HOH HOH . D 4 HOH A 101 606 606 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A CMC . . . C 3 19.516 -7.981 13.375 1 9.96 ? N1A CMC 700 A 1 HETATM 2 C C2A CMC . . . C 3 19.093 -8.66 14.477 1 15.67 ? C2A CMC 700 A 1 HETATM 3 N N3A CMC . . . C 3 18.227 -9.652 14.476 1 25.44 ? N3A CMC 700 A 1 HETATM 4 C C4A CMC . . . C 3 17.934 -10.096 13.238 1 10.06 ? C4A CMC 700 A 1 HETATM 5 C C5A CMC . . . C 3 18.369 -9.567 12.021 1 8.93 ? C5A CMC 700 A 1 HETATM 6 C C6A CMC . . . C 3 19.209 -8.371 12.111 1 7.84 ? C6A CMC 700 A 1 HETATM 7 N N6A CMC . . . C 3 19.758 -7.78 11.082 1 13.33 ? N6A CMC 700 A 1 HETATM 8 N N7A CMC . . . C 3 17.903 -10.284 10.964 1 9.75 ? N7A CMC 700 A 1 HETATM 9 C C8A CMC . . . C 3 17.183 -11.265 11.491 1 11.65 ? C8A CMC 700 A 1 HETATM 10 N N9A CMC . . . C 3 17.15 -11.198 12.883 1 9.95 ? N9A CMC 700 A 1 HETATM 11 C C1B CMC . . . C 3 16.2 -11.939 13.793 1 22.45 ? C1B CMC 700 A 1 HETATM 12 C C2B CMC . . . C 3 14.779 -11.764 13.362 1 25.28 ? C2B CMC 700 A 1 HETATM 13 O O2B CMC . . . C 3 14.287 -10.439 13.534 1 31.28 ? O2B CMC 700 A 1 HETATM 14 C C3B CMC . . . C 3 14.126 -12.849 14.276 1 12.15 ? C3B CMC 700 A 1 HETATM 15 O O3B CMC . . . C 3 14.001 -12.523 15.617 1 32.72 ? O3B CMC 700 A 1 HETATM 16 P P3B CMC . . . C 3 12.585 -12.954 16.514 1 53.78 ? P3B CMC 700 A 1 HETATM 17 O O7A CMC . . . C 3 12.58 -12.649 18.09 1 42.92 ? O7A CMC 700 A 1 HETATM 18 O O8A CMC . . . C 3 11.568 -11.914 15.849 1 43.68 ? O8A CMC 700 A 1 HETATM 19 O O9A CMC . . . C 3 12.262 -14.468 16.127 1 31.47 ? O9A CMC 700 A 1 HETATM 20 C C4B CMC . . . C 3 15.054 -14.047 13.882 1 16.98 ? C4B CMC 700 A 1 HETATM 21 O O4B CMC . . . C 3 16.372 -13.367 13.645 1 17.41 ? O4B CMC 700 A 1 HETATM 22 C C5B CMC . . . C 3 14.745 -14.962 12.691 1 19.99 ? C5B CMC 700 A 1 HETATM 23 O O5B CMC . . . C 3 14.467 -14.054 11.57 1 18.5 ? O5B CMC 700 A 1 HETATM 24 P P1A CMC . . . C 3 14.936 -14.311 10.045 1 17.15 ? P1A CMC 700 A 1 HETATM 25 O O1A CMC . . . C 3 16.445 -14.392 9.926 1 16.3 ? O1A CMC 700 A 1 HETATM 26 O O2A CMC . . . C 3 14.134 -15.426 9.457 1 21.93 ? O2A CMC 700 A 1 HETATM 27 O O3A CMC . . . C 3 14.372 -13.025 9.357 1 15.87 ? O3A CMC 700 A 1 HETATM 28 P P2A CMC . . . C 3 12.985 -12.593 8.594 1 18.19 ? P2A CMC 700 A 1 HETATM 29 O O4A CMC . . . C 3 12.912 -13.339 7.247 1 22.95 ? O4A CMC 700 A 1 HETATM 30 O O5A CMC . . . C 3 11.753 -12.694 9.509 1 20.53 ? O5A CMC 700 A 1 HETATM 31 O O6A CMC . . . C 3 13.376 -10.996 8.296 1 23.36 ? O6A CMC 700 A 1 HETATM 32 C CBP CMC . . . C 3 14.767 -9.186 7.533 1 21.58 ? CBP CMC 700 A 1 HETATM 33 C CCP CMC . . . C 3 14.251 -10.619 7.231 1 17.29 ? CCP CMC 700 A 1 HETATM 34 C CDP CMC . . . C 3 15.487 -8.471 6.38 1 8.99 ? CDP CMC 700 A 1 HETATM 35 C CEP CMC . . . C 3 13.454 -8.47 7.875 1 9.69 ? CEP CMC 700 A 1 HETATM 36 C CAP CMC . . . C 3 15.704 -9.253 8.764 1 14.47 ? CAP CMC 700 A 1 HETATM 37 O OAP CMC . . . C 3 16.881 -9.993 8.514 1 15.81 ? OAP CMC 700 A 1 HETATM 38 C C9P CMC . . . C 3 15.982 -7.838 9.454 1 21.49 ? C9P CMC 700 A 1 HETATM 39 O O9P CMC . . . C 3 15.162 -7.389 10.26 1 12.12 ? O9P CMC 700 A 1 HETATM 40 N N8P CMC . . . C 3 17.066 -7.207 9.014 1 16.13 ? N8P CMC 700 A 1 HETATM 41 C C7P CMC . . . C 3 17.464 -5.849 9.462 1 22.61 ? C7P CMC 700 A 1 HETATM 42 C C6P CMC . . . C 3 16.714 -4.813 8.636 1 11.44 ? C6P CMC 700 A 1 HETATM 43 C C5P CMC . . . C 3 17.249 -4.833 7.23 1 23.54 ? C5P CMC 700 A 1 HETATM 44 O O5P CMC . . . C 3 18.487 -4.691 7.005 1 19.79 ? O5P CMC 700 A 1 HETATM 45 N N4P CMC . . . C 3 16.353 -4.896 6.278 1 14.82 ? N4P CMC 700 A 1 HETATM 46 C C3P CMC . . . C 3 16.678 -4.865 4.785 1 7.15 ? C3P CMC 700 A 1 HETATM 47 C C2P CMC . . . C 3 16.26 -6.167 4.055 1 10.77 ? C2P CMC 700 A 1 HETATM 48 S S1P CMC . . . C 3 16.909 -6.429 2.375 1 14.74 ? S1P CMC 700 A 1 HETATM 49 C C1 CMC . . . C 3 16.9 -4.969 1.309 1 16.68 ? C1 CMC 700 A 1 HETATM 50 C C2 CMC . . . C 3 15.64 -4.137 1.462 1 20.94 ? C2 CMC 700 A 1 HETATM 51 O O21 CMC . . . C 3 14.619 -4.785 1.59 1 15.06 ? O21 CMC 700 A 1 HETATM 52 O O22 CMC . . . C 3 15.664 -2.836 1.49 1 18.44 ? O22 CMC 700 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 52 #