data_5CUB # _model_server_result.job_id FsE20X4-y_UX-at88TUeug _model_server_result.datetime_utc '2024-11-12 21:07:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 5CUB # _exptl.entry_id 5CUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.321 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 4-[(4-methylpiperazin-1-yl)methyl]benzoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CUB _cell.length_a 82.8 _cell.length_b 96.59 _cell.length_c 57.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N2 O2' _chem_comp.formula_weight 248.321 _chem_comp.id 54V _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 4-[(4-methylpiperazin-1-yl)methyl]benzoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 O1 54V sing 1 n n O1 C12 54V sing 2 n n C10 C11 54V doub 3 n y C10 C9 54V sing 4 n y C11 C6 54V sing 5 n y C12 C9 54V sing 6 n n C12 O 54V doub 7 n n C9 C8 54V doub 8 n y C6 C5 54V sing 9 n n C6 C7 54V doub 10 n y C5 N1 54V sing 11 n n C8 C7 54V sing 12 n y N1 C2 54V sing 13 n n N1 C3 54V sing 14 n n C2 C1 54V sing 15 n n C3 C4 54V sing 16 n n C1 N 54V sing 17 n n C4 N 54V sing 18 n n N C 54V sing 19 n n C4 H2 54V sing 20 n n C4 H3 54V sing 21 n n C5 H4 54V sing 22 n n C5 H5 54V sing 23 n n C7 H6 54V sing 24 n n C8 H7 54V sing 25 n n C10 H8 54V sing 26 n n C13 H9 54V sing 27 n n C13 H10 54V sing 28 n n C13 H11 54V sing 29 n n C11 H12 54V sing 30 n n C2 H13 54V sing 31 n n C2 H14 54V sing 32 n n C1 H15 54V sing 33 n n C1 H16 54V sing 34 n n C3 H17 54V sing 35 n n C3 H18 54V sing 36 n n C H20 54V sing 37 n n C H21 54V sing 38 n n C H22 54V sing 39 n n # _atom_sites.entry_id 5CUB _atom_sites.fract_transf_matrix[1][1] 0.012077 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 54V A 1 2001 1 54V LIG . C 3 EDO A 1 2002 1 EDO EDO . D 4 HOH A 1 2101 120 HOH HOH . D 4 HOH A 2 2102 62 HOH HOH . D 4 HOH A 3 2103 93 HOH HOH . D 4 HOH A 4 2104 37 HOH HOH . D 4 HOH A 5 2105 127 HOH HOH . D 4 HOH A 6 2106 123 HOH HOH . D 4 HOH A 7 2107 85 HOH HOH . D 4 HOH A 8 2108 88 HOH HOH . D 4 HOH A 9 2109 60 HOH HOH . D 4 HOH A 10 2110 92 HOH HOH . D 4 HOH A 11 2111 46 HOH HOH . D 4 HOH A 12 2112 38 HOH HOH . D 4 HOH A 13 2113 39 HOH HOH . D 4 HOH A 14 2114 33 HOH HOH . D 4 HOH A 15 2115 69 HOH HOH . D 4 HOH A 16 2116 24 HOH HOH . D 4 HOH A 17 2117 21 HOH HOH . D 4 HOH A 18 2118 40 HOH HOH . D 4 HOH A 19 2119 91 HOH HOH . D 4 HOH A 20 2120 42 HOH HOH . D 4 HOH A 21 2121 25 HOH HOH . D 4 HOH A 22 2122 73 HOH HOH . D 4 HOH A 23 2123 150 HOH HOH . D 4 HOH A 24 2124 136 HOH HOH . D 4 HOH A 25 2125 14 HOH HOH . D 4 HOH A 26 2126 7 HOH HOH . D 4 HOH A 27 2127 2 HOH HOH . D 4 HOH A 28 2128 63 HOH HOH . D 4 HOH A 29 2129 29 HOH HOH . D 4 HOH A 30 2130 74 HOH HOH . D 4 HOH A 31 2131 149 HOH HOH . D 4 HOH A 32 2132 48 HOH HOH . D 4 HOH A 33 2133 71 HOH HOH . D 4 HOH A 34 2134 35 HOH HOH . D 4 HOH A 35 2135 31 HOH HOH . D 4 HOH A 36 2136 9 HOH HOH . D 4 HOH A 37 2137 6 HOH HOH . D 4 HOH A 38 2138 26 HOH HOH . D 4 HOH A 39 2139 41 HOH HOH . D 4 HOH A 40 2140 27 HOH HOH . D 4 HOH A 41 2141 47 HOH HOH . D 4 HOH A 42 2142 82 HOH HOH . D 4 HOH A 43 2143 23 HOH HOH . D 4 HOH A 44 2144 20 HOH HOH . D 4 HOH A 45 2145 105 HOH HOH . D 4 HOH A 46 2146 5 HOH HOH . D 4 HOH A 47 2147 15 HOH HOH . D 4 HOH A 48 2148 19 HOH HOH . D 4 HOH A 49 2149 65 HOH HOH . D 4 HOH A 50 2150 4 HOH HOH . D 4 HOH A 51 2151 16 HOH HOH . D 4 HOH A 52 2152 75 HOH HOH . D 4 HOH A 53 2153 132 HOH HOH . D 4 HOH A 54 2154 145 HOH HOH . D 4 HOH A 55 2155 77 HOH HOH . D 4 HOH A 56 2156 13 HOH HOH . D 4 HOH A 57 2157 128 HOH HOH . D 4 HOH A 58 2158 143 HOH HOH . D 4 HOH A 59 2159 53 HOH HOH . D 4 HOH A 60 2160 36 HOH HOH . D 4 HOH A 61 2161 17 HOH HOH . D 4 HOH A 62 2162 80 HOH HOH . D 4 HOH A 63 2163 28 HOH HOH . D 4 HOH A 64 2164 98 HOH HOH . D 4 HOH A 65 2165 45 HOH HOH . D 4 HOH A 66 2166 51 HOH HOH . D 4 HOH A 67 2167 144 HOH HOH . D 4 HOH A 68 2168 90 HOH HOH . D 4 HOH A 69 2169 50 HOH HOH . D 4 HOH A 70 2170 131 HOH HOH . D 4 HOH A 71 2171 122 HOH HOH . D 4 HOH A 72 2172 18 HOH HOH . D 4 HOH A 73 2173 78 HOH HOH . D 4 HOH A 74 2174 115 HOH HOH . D 4 HOH A 75 2175 10 HOH HOH . D 4 HOH A 76 2176 64 HOH HOH . D 4 HOH A 77 2177 67 HOH HOH . D 4 HOH A 78 2178 125 HOH HOH . D 4 HOH A 79 2179 12 HOH HOH . D 4 HOH A 80 2180 3 HOH HOH . D 4 HOH A 81 2181 1 HOH HOH . D 4 HOH A 82 2182 81 HOH HOH . D 4 HOH A 83 2183 30 HOH HOH . D 4 HOH A 84 2184 84 HOH HOH . D 4 HOH A 85 2185 112 HOH HOH . D 4 HOH A 86 2186 54 HOH HOH . D 4 HOH A 87 2187 55 HOH HOH . D 4 HOH A 88 2188 76 HOH HOH . D 4 HOH A 89 2189 95 HOH HOH . D 4 HOH A 90 2190 52 HOH HOH . D 4 HOH A 91 2191 87 HOH HOH . D 4 HOH A 92 2192 83 HOH HOH . D 4 HOH A 93 2193 148 HOH HOH . D 4 HOH A 94 2194 66 HOH HOH . D 4 HOH A 95 2195 8 HOH HOH . D 4 HOH A 96 2196 141 HOH HOH . D 4 HOH A 97 2197 107 HOH HOH . D 4 HOH A 98 2198 94 HOH HOH . D 4 HOH A 99 2199 138 HOH HOH . D 4 HOH A 100 2200 58 HOH HOH . D 4 HOH A 101 2201 11 HOH HOH . D 4 HOH A 102 2202 57 HOH HOH . D 4 HOH A 103 2203 126 HOH HOH . D 4 HOH A 104 2204 34 HOH HOH . D 4 HOH A 105 2205 137 HOH HOH . D 4 HOH A 106 2206 22 HOH HOH . D 4 HOH A 107 2207 97 HOH HOH . D 4 HOH A 108 2208 118 HOH HOH . D 4 HOH A 109 2209 70 HOH HOH . D 4 HOH A 110 2210 99 HOH HOH . D 4 HOH A 111 2211 104 HOH HOH . D 4 HOH A 112 2212 152 HOH HOH . D 4 HOH A 113 2213 109 HOH HOH . D 4 HOH A 114 2214 133 HOH HOH . D 4 HOH A 115 2215 101 HOH HOH . D 4 HOH A 116 2216 116 HOH HOH . D 4 HOH A 117 2217 32 HOH HOH . D 4 HOH A 118 2218 121 HOH HOH . D 4 HOH A 119 2219 43 HOH HOH . D 4 HOH A 120 2220 102 HOH HOH . D 4 HOH A 121 2221 129 HOH HOH . D 4 HOH A 122 2222 44 HOH HOH . D 4 HOH A 123 2223 61 HOH HOH . D 4 HOH A 124 2224 49 HOH HOH . D 4 HOH A 125 2225 151 HOH HOH . D 4 HOH A 126 2226 106 HOH HOH . D 4 HOH A 127 2227 59 HOH HOH . D 4 HOH A 128 2228 103 HOH HOH . D 4 HOH A 129 2229 96 HOH HOH . D 4 HOH A 130 2230 113 HOH HOH . D 4 HOH A 131 2231 100 HOH HOH . D 4 HOH A 132 2232 134 HOH HOH . D 4 HOH A 133 2233 119 HOH HOH . D 4 HOH A 134 2234 89 HOH HOH . D 4 HOH A 135 2235 140 HOH HOH . D 4 HOH A 136 2236 79 HOH HOH . D 4 HOH A 137 2237 117 HOH HOH . D 4 HOH A 138 2238 86 HOH HOH . D 4 HOH A 139 2239 139 HOH HOH . D 4 HOH A 140 2240 110 HOH HOH . D 4 HOH A 141 2241 56 HOH HOH . D 4 HOH A 142 2242 142 HOH HOH . D 4 HOH A 143 2243 72 HOH HOH . D 4 HOH A 144 2244 147 HOH HOH . D 4 HOH A 145 2245 111 HOH HOH . D 4 HOH A 146 2246 114 HOH HOH . D 4 HOH A 147 2247 68 HOH HOH . D 4 HOH A 148 2248 130 HOH HOH . D 4 HOH A 149 2249 124 HOH HOH . D 4 HOH A 150 2250 146 HOH HOH . D 4 HOH A 151 2251 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 54V . . . B 2 10.059 43.059 31.62 0.84 54.21 ? N1 54V 2001 A 1 HETATM 2 C C4 54V . . . B 2 9.968 42.306 33.942 0.84 51.02 ? C4 54V 2001 A 1 HETATM 3 C C5 54V . . . B 2 10.391 42.732 30.231 0.84 43.27 ? C5 54V 2001 A 1 HETATM 4 C C6 54V . . . B 2 11.612 41.853 30.102 0.84 42.97 ? C6 54V 2001 A 1 HETATM 5 C C7 54V . . . B 2 12.869 42.318 30.471 0.84 37.36 ? C7 54V 2001 A 1 HETATM 6 C C8 54V . . . B 2 13.984 41.501 30.366 0.84 35.71 ? C8 54V 2001 A 1 HETATM 7 C C10 54V . . . B 2 12.612 39.74 29.52 0.84 38.27 ? C10 54V 2001 A 1 HETATM 8 C C13 54V . . . B 2 15.769 37.108 29.42 0.84 30.31 ? C13 54V 2001 A 1 HETATM 9 O O 54V . . . B 2 16.168 39.631 30.037 0.84 26.2 ? O 54V 2001 A 1 HETATM 10 C C12 54V . . . B 2 15.045 39.308 29.781 0.84 31.97 ? C12 54V 2001 A 1 HETATM 11 O O1 54V . . . B 2 14.703 38.082 29.431 0.84 35.92 ? O1 54V 2001 A 1 HETATM 12 C C9 54V . . . B 2 13.864 40.21 29.882 0.84 33.53 ? C9 54V 2001 A 1 HETATM 13 C C11 54V . . . B 2 11.499 40.557 29.627 0.84 39.71 ? C11 54V 2001 A 1 HETATM 14 C C2 54V . . . B 2 8.677 43.527 31.75 0.84 54.98 ? C2 54V 2001 A 1 HETATM 15 C C1 54V . . . B 2 8.381 43.911 33.182 0.84 57.05 ? C1 54V 2001 A 1 HETATM 16 C C3 54V . . . B 2 10.261 41.919 32.514 0.84 51.17 ? C3 54V 2001 A 1 HETATM 17 N N 54V . . . B 2 8.592 42.776 34.078 0.84 61.83 ? N 54V 2001 A 1 HETATM 18 C C 54V . . . B 2 8.316 43.157 35.464 0.84 59.63 ? C 54V 2001 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #