data_5CUJ
#
_model_server_result.job_id            '_u0oaLM_nB2SGJgsYn3Mrw' 
_model_server_result.datetime_utc      '2025-01-10 12:38:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cuj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":103}' 
#
_entry.id    5CUJ 
#
_exptl.entry_id    5CUJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.54 
_cell.angle_gamma         90 
_cell.entry_id            5CUJ 
_cell.length_a            73.758 
_cell.length_b            59.758 
_cell.length_c            47.284 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CUJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 O N N 
? 4 R N N 
? 4 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 31 A CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 5 A CYS 5 1_555 A SG CYS 20 A CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 A SG CYS 10 A CYS 10 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 B SG CYS 3 B CYS 3 1_555 B SG CYS 31 B CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 B SG CYS 5 B CYS 5 1_555 B SG CYS 20 B CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 B SG CYS 10 B CYS 10 1_555 B SG CYS 30 B CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf7 C SG CYS 3 C CYS 3 1_555 C SG CYS 31 C CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 C SG CYS 5 C CYS 5 1_555 C SG CYS 20 C CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 C SG CYS 10 C CYS 10 1_555 C SG CYS 30 C CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 D SG CYS 3 D CYS 3 1_555 D SG CYS 31 D CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf11 D SG CYS 5 D CYS 5 1_555 D SG CYS 20 D CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf12 D SG CYS 10 D CYS 10 1_555 D SG CYS 30 D CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf13 E SG CYS 3 E CYS 3 1_555 E SG CYS 31 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf14 E SG CYS 5 E CYS 5 1_555 E SG CYS 20 E CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf15 E SG CYS 10 E CYS 10 1_555 E SG CYS 30 E CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf16 F SG CYS 3 F CYS 3 1_555 F SG CYS 31 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf17 F SG CYS 5 F CYS 5 1_555 F SG CYS 20 F CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf18 F SG CYS 10 F CYS 10 1_555 F SG CYS 30 F CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 A OE2 GLU 21 A GLU 21 1_555 G CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc2 A O GLY 24 A GLY 24 1_555 G CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc3 G CA CA . A CA 101 1_555 E OE2 GLU 21 E GLU 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc4 G CA CA . A CA 101 1_555 E O GLY 24 E GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc5 G CA CA . A CA 101 1_555 F OE2 GLU 21 F GLU 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc6 G CA CA . A CA 101 1_555 F O GLY 24 F GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc7 B OE2 GLU 21 B GLU 21 1_555 J CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc8 B O GLY 24 B GLY 24 1_555 J CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc9 J CA CA . B CA 101 1_555 C OE2 GLU 21 C GLU 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc10 J CA CA . B CA 101 1_555 C O GLY 24 C GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc11 J CA CA . B CA 101 1_555 D OE2 GLU 21 D GLU 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc12 J CA CA . B CA 101 1_555 D O GLY 24 D GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 123 n n 
C1 H11 MPD sing 124 n n 
C1 H12 MPD sing 125 n n 
C1 H13 MPD sing 126 n n 
C2 O2 MPD sing 127 n n 
C2 CM MPD sing 128 n n 
C2 C3 MPD sing 129 n n 
O2 HO2 MPD sing 130 n n 
CM HM1 MPD sing 131 n n 
CM HM2 MPD sing 132 n n 
CM HM3 MPD sing 133 n n 
C3 C4 MPD sing 134 n n 
C3 H31 MPD sing 135 n n 
C3 H32 MPD sing 136 n n 
C4 O4 MPD sing 137 n n 
C4 C5 MPD sing 138 n n 
C4 H4 MPD sing 139 n n 
O4 HO4 MPD sing 140 n n 
C5 H51 MPD sing 141 n n 
C5 H52 MPD sing 142 n n 
C5 H53 MPD sing 143 n n 
#
_atom_sites.entry_id                     5CUJ 
_atom_sites.fract_transf_matrix[1][1]    0.013558 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003769 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016734 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021951 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 CA A 1 101 2 CA CA . 
H 3 CL A 1 102 1 CL CL . 
I 3 CL A 1 103 11 CL CL . 
J 2 CA B 1 101 1 CA CA . 
K 3 CL B 1 102 6 CL CL . 
L 3 CL B 1 103 10 CL CL . 
M 3 CL C 1 101 2 CL CL . 
N 3 CL C 1 102 7 CL CL . 
O 4 MPD C 1 103 2 MPD MPD . 
P 3 CL D 1 101 3 CL CL . 
Q 3 CL D 1 102 12 CL CL . 
R 4 MPD D 1 103 3 MPD MPD . 
S 3 CL E 1 101 4 CL CL . 
T 3 CL E 1 102 9 CL CL . 
U 3 CL F 1 101 5 CL CL . 
V 3 CL F 1 102 8 CL CL . 
W 4 MPD F 1 103 1 MPD MPD . 
X 5 HOH A 1 201 28 HOH HOH . 
X 5 HOH A 2 202 22 HOH HOH . 
X 5 HOH A 3 203 17 HOH HOH . 
X 5 HOH A 4 204 27 HOH HOH . 
X 5 HOH A 5 205 12 HOH HOH . 
X 5 HOH A 6 206 62 HOH HOH . 
X 5 HOH A 7 207 63 HOH HOH . 
X 5 HOH A 8 208 50 HOH HOH . 
Y 5 HOH B 1 201 39 HOH HOH . 
Y 5 HOH B 2 202 34 HOH HOH . 
Y 5 HOH B 3 203 5 HOH HOH . 
Y 5 HOH B 4 204 6 HOH HOH . 
Y 5 HOH B 5 205 25 HOH HOH . 
Y 5 HOH B 6 206 8 HOH HOH . 
Y 5 HOH B 7 207 37 HOH HOH . 
Y 5 HOH B 8 208 2 HOH HOH . 
Y 5 HOH B 9 209 48 HOH HOH . 
Y 5 HOH B 10 210 46 HOH HOH . 
Y 5 HOH B 11 211 18 HOH HOH . 
Y 5 HOH B 12 212 7 HOH HOH . 
Z 5 HOH C 1 201 49 HOH HOH . 
Z 5 HOH C 2 202 3 HOH HOH . 
Z 5 HOH C 3 203 9 HOH HOH . 
Z 5 HOH C 4 204 60 HOH HOH . 
Z 5 HOH C 5 205 54 HOH HOH . 
Z 5 HOH C 6 206 14 HOH HOH . 
Z 5 HOH C 7 207 21 HOH HOH . 
Z 5 HOH C 8 208 32 HOH HOH . 
Z 5 HOH C 9 209 56 HOH HOH . 
Z 5 HOH C 10 210 26 HOH HOH . 
Z 5 HOH C 11 211 1 HOH HOH . 
Z 5 HOH C 12 212 20 HOH HOH . 
Z 5 HOH C 13 213 59 HOH HOH . 
Z 5 HOH C 14 214 61 HOH HOH . 
Z 5 HOH C 15 215 40 HOH HOH . 
AA 5 HOH D 1 201 4 HOH HOH . 
AA 5 HOH D 2 202 51 HOH HOH . 
AA 5 HOH D 3 203 10 HOH HOH . 
AA 5 HOH D 4 204 15 HOH HOH . 
AA 5 HOH D 5 205 44 HOH HOH . 
AA 5 HOH D 6 206 11 HOH HOH . 
AA 5 HOH D 7 207 38 HOH HOH . 
AA 5 HOH D 8 208 42 HOH HOH . 
AA 5 HOH D 9 209 16 HOH HOH . 
AA 5 HOH D 10 210 19 HOH HOH . 
AA 5 HOH D 11 211 66 HOH HOH . 
AA 5 HOH D 12 212 35 HOH HOH . 
BA 5 HOH E 1 201 36 HOH HOH . 
BA 5 HOH E 2 202 33 HOH HOH . 
BA 5 HOH E 3 203 24 HOH HOH . 
BA 5 HOH E 4 204 13 HOH HOH . 
BA 5 HOH E 5 205 45 HOH HOH . 
BA 5 HOH E 6 206 29 HOH HOH . 
BA 5 HOH E 7 207 64 HOH HOH . 
BA 5 HOH E 8 208 65 HOH HOH . 
BA 5 HOH E 9 209 53 HOH HOH . 
CA 5 HOH F 1 201 67 HOH HOH . 
CA 5 HOH F 2 202 52 HOH HOH . 
CA 5 HOH F 3 203 47 HOH HOH . 
CA 5 HOH F 4 204 23 HOH HOH . 
CA 5 HOH F 5 205 30 HOH HOH . 
CA 5 HOH F 6 206 31 HOH HOH . 
CA 5 HOH F 7 207 58 HOH HOH . 
CA 5 HOH F 8 208 43 HOH HOH . 
CA 5 HOH F 9 209 41 HOH HOH . 
CA 5 HOH F 10 210 55 HOH HOH . 
CA 5 HOH F 11 211 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . R 4 4.64 -28.299 10.823 1 91.28 ? C1 MPD 103 D 1 
HETATM 2 C C2 MPD . . . R 4 6.025 -28.929 11.015 1 91.63 ? C2 MPD 103 D 1 
HETATM 3 O O2 MPD . . . R 4 6.664 -28.942 9.741 1 91.41 ? O2 MPD 103 D 1 
HETATM 4 C CM MPD . . . R 4 6.85 -28.098 11.994 1 91.16 ? CM MPD 103 D 1 
HETATM 5 C C3 MPD . . . R 4 6.071 -30.387 11.477 1 92.58 ? C3 MPD 103 D 1 
HETATM 6 C C4 MPD . . . R 4 5.33 -31.378 10.583 1 93.14 ? C4 MPD 103 D 1 
HETATM 7 O O4 MPD . . . R 4 5.723 -31.269 9.209 1 93.96 ? O4 MPD 103 D 1 
HETATM 8 C C5 MPD . . . R 4 5.622 -32.796 11.052 1 93.38 ? C5 MPD 103 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#