data_5CUM # _model_server_result.job_id dsXSj7rRkCJJHVXzZMp09w _model_server_result.datetime_utc '2025-01-10 12:35:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":102}' # _entry.id 5CUM # _exptl.entry_id 5CUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.095 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISOPROPYL ALCOHOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.36 _cell.angle_gamma 90 _cell.entry_id 5CUM _cell.length_a 47.603 _cell.length_b 59.966 _cell.length_c 38.272 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 K N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 31 A CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 5 A CYS 5 1_555 A SG CYS 20 A CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf3 A SG CYS 10 A CYS 10 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 3 B CYS 3 1_555 B SG CYS 31 B CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 B SG CYS 5 B CYS 5 1_555 B SG CYS 20 B CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 B SG CYS 10 B CYS 10 1_555 B SG CYS 30 B CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 C SG CYS 3 C CYS 3 1_555 C SG CYS 31 C CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 C SG CYS 5 C CYS 5 1_555 C SG CYS 20 C CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 C SG CYS 10 C CYS 10 1_555 C SG CYS 30 C CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A OE2 GLU 21 A GLU 21 1_555 D CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 A O GLY 24 A GLY 24 1_555 D CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc3 D CA CA . A CA 101 1_555 B OE2 GLU 21 B GLU 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc4 D CA CA . A CA 101 1_555 B O GLY 24 B GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc5 D CA CA . A CA 101 1_555 C OE2 GLU 21 C GLU 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc6 D CA CA . A CA 101 1_555 C O GLY 24 C GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? # _chem_comp.formula 'C3 H8 O' _chem_comp.formula_weight 60.095 _chem_comp.id IPA _chem_comp.mon_nstd_flag . _chem_comp.name 'ISOPROPYL ALCOHOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-PROPANOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPA sing 102 n n C1 H11 IPA sing 103 n n C1 H12 IPA sing 104 n n C1 H13 IPA sing 105 n n C2 C3 IPA sing 106 n n C2 O2 IPA sing 107 n n C2 H2 IPA sing 108 n n C3 H31 IPA sing 109 n n C3 H32 IPA sing 110 n n C3 H33 IPA sing 111 n n O2 HO2 IPA sing 112 n n # _atom_sites.entry_id 5CUM _atom_sites.fract_transf_matrix[1][1] 0.021007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008215 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CA A 1 101 1 CA CA . E 3 CL A 1 102 1 CL CL . F 3 CL A 1 103 3 CL CL . G 3 CL A 1 104 5 CL CL . H 3 CL A 1 105 6 CL CL . I 4 IPA A 1 106 2 IPA IPA . J 3 CL B 1 101 4 CL CL . K 4 IPA B 1 102 3 IPA IPA . L 3 CL C 1 101 2 CL CL . M 4 IPA C 1 102 1 IPA IPA . N 5 HOH A 1 201 59 HOH HOH . N 5 HOH A 2 202 66 HOH HOH . N 5 HOH A 3 203 70 HOH HOH . N 5 HOH A 4 204 1 HOH HOH . N 5 HOH A 5 205 17 HOH HOH . N 5 HOH A 6 206 74 HOH HOH . N 5 HOH A 7 207 34 HOH HOH . N 5 HOH A 8 208 9 HOH HOH . N 5 HOH A 9 209 23 HOH HOH . N 5 HOH A 10 210 45 HOH HOH . N 5 HOH A 11 211 67 HOH HOH . N 5 HOH A 12 212 53 HOH HOH . N 5 HOH A 13 213 8 HOH HOH . N 5 HOH A 14 214 33 HOH HOH . N 5 HOH A 15 215 43 HOH HOH . N 5 HOH A 16 216 76 HOH HOH . N 5 HOH A 17 217 48 HOH HOH . N 5 HOH A 18 218 68 HOH HOH . N 5 HOH A 19 219 30 HOH HOH . N 5 HOH A 20 220 77 HOH HOH . N 5 HOH A 21 221 49 HOH HOH . N 5 HOH A 22 222 61 HOH HOH . N 5 HOH A 23 223 26 HOH HOH . N 5 HOH A 24 224 11 HOH HOH . N 5 HOH A 25 225 44 HOH HOH . N 5 HOH A 26 226 13 HOH HOH . N 5 HOH A 27 227 41 HOH HOH . O 5 HOH B 1 201 40 HOH HOH . O 5 HOH B 2 202 3 HOH HOH . O 5 HOH B 3 203 65 HOH HOH . O 5 HOH B 4 204 29 HOH HOH . O 5 HOH B 5 205 54 HOH HOH . O 5 HOH B 6 206 32 HOH HOH . O 5 HOH B 7 207 16 HOH HOH . O 5 HOH B 8 208 5 HOH HOH . O 5 HOH B 9 209 7 HOH HOH . O 5 HOH B 10 210 25 HOH HOH . O 5 HOH B 11 211 20 HOH HOH . O 5 HOH B 12 212 24 HOH HOH . O 5 HOH B 13 213 10 HOH HOH . O 5 HOH B 14 214 19 HOH HOH . O 5 HOH B 15 215 60 HOH HOH . O 5 HOH B 16 216 4 HOH HOH . O 5 HOH B 17 217 18 HOH HOH . O 5 HOH B 18 218 71 HOH HOH . O 5 HOH B 19 219 79 HOH HOH . O 5 HOH B 20 220 72 HOH HOH . O 5 HOH B 21 221 12 HOH HOH . O 5 HOH B 22 222 37 HOH HOH . O 5 HOH B 23 223 47 HOH HOH . O 5 HOH B 24 224 22 HOH HOH . P 5 HOH C 1 201 78 HOH HOH . P 5 HOH C 2 202 27 HOH HOH . P 5 HOH C 3 203 2 HOH HOH . P 5 HOH C 4 204 15 HOH HOH . P 5 HOH C 5 205 75 HOH HOH . P 5 HOH C 6 206 21 HOH HOH . P 5 HOH C 7 207 56 HOH HOH . P 5 HOH C 8 208 6 HOH HOH . P 5 HOH C 9 209 31 HOH HOH . P 5 HOH C 10 210 69 HOH HOH . P 5 HOH C 11 211 35 HOH HOH . P 5 HOH C 12 212 14 HOH HOH . P 5 HOH C 13 213 39 HOH HOH . P 5 HOH C 14 214 36 HOH HOH . P 5 HOH C 15 215 63 HOH HOH . P 5 HOH C 16 216 57 HOH HOH . P 5 HOH C 17 217 64 HOH HOH . P 5 HOH C 18 218 28 HOH HOH . P 5 HOH C 19 219 73 HOH HOH . P 5 HOH C 20 220 50 HOH HOH . P 5 HOH C 21 221 58 HOH HOH . P 5 HOH C 22 222 55 HOH HOH . P 5 HOH C 23 223 38 HOH HOH . P 5 HOH C 24 224 52 HOH HOH . P 5 HOH C 25 225 62 HOH HOH . P 5 HOH C 26 226 51 HOH HOH . P 5 HOH C 27 227 46 HOH HOH . P 5 HOH C 28 228 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPA . . . K 4 92.837 -14.368 40.974 1 52.07 ? C1 IPA 102 B 1 HETATM 2 C C2 IPA . . . K 4 92.187 -15.522 40.225 1 53.45 ? C2 IPA 102 B 1 HETATM 3 C C3 IPA . . . K 4 91.649 -15.046 38.885 1 55.95 ? C3 IPA 102 B 1 HETATM 4 O O2 IPA . . . K 4 93.178 -16.487 39.981 1 59.96 ? O2 IPA 102 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #