data_5CUX # _model_server_result.job_id wMp8bqpCp3uhXF1TNuNUbg _model_server_result.datetime_utc '2024-11-04 23:17:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cux # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 5CUX # _exptl.entry_id 5CUX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CUX _cell.length_a 122.893 _cell.length_b 122.893 _cell.length_c 127.675 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CUX _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -85.116667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 I N N # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 264 n n P1 O2 POP sing 265 n n P1 O3 POP sing 266 n n P1 O POP sing 267 n n O2 HO2 POP sing 268 n n O P2 POP sing 269 n n P2 O4 POP doub 270 n n P2 O5 POP sing 271 n n P2 O6 POP sing 272 n n O5 HO5 POP sing 273 n n # _atom_sites.entry_id 5CUX _atom_sites.fract_transf_matrix[1][1] 0.008137 _atom_sites.fract_transf_matrix[1][2] 0.004698 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 POP A 1 801 801 POP POP . D 2 POP A 1 802 802 POP POP . E 3 PO4 A 1 803 901 PO4 PO4 . F 3 PO4 A 1 804 902 PO4 PO4 . G 3 PO4 A 1 805 904 PO4 PO4 . H 3 PO4 A 1 806 905 PO4 PO4 . I 2 POP B 1 501 803 POP POP . J 3 PO4 B 1 502 903 PO4 PO4 . K 3 PO4 B 1 503 906 PO4 PO4 . L 3 PO4 B 1 504 907 PO4 PO4 . M 4 HOH A 1 901 114 HOH HOH . M 4 HOH A 2 902 116 HOH HOH . M 4 HOH A 3 903 53 HOH HOH . M 4 HOH A 4 904 52 HOH HOH . M 4 HOH A 5 905 81 HOH HOH . M 4 HOH A 6 906 115 HOH HOH . M 4 HOH A 7 907 83 HOH HOH . M 4 HOH A 8 908 86 HOH HOH . M 4 HOH A 9 909 50 HOH HOH . M 4 HOH A 10 910 85 HOH HOH . M 4 HOH A 11 911 75 HOH HOH . M 4 HOH A 12 912 113 HOH HOH . M 4 HOH A 13 913 15 HOH HOH . M 4 HOH A 14 914 88 HOH HOH . M 4 HOH A 15 915 84 HOH HOH . M 4 HOH A 16 916 68 HOH HOH . M 4 HOH A 17 917 36 HOH HOH . M 4 HOH A 18 918 110 HOH HOH . M 4 HOH A 19 919 23 HOH HOH . M 4 HOH A 20 920 48 HOH HOH . M 4 HOH A 21 921 67 HOH HOH . M 4 HOH A 22 922 42 HOH HOH . M 4 HOH A 23 923 93 HOH HOH . M 4 HOH A 24 924 117 HOH HOH . M 4 HOH A 25 925 73 HOH HOH . M 4 HOH A 26 926 102 HOH HOH . M 4 HOH A 27 927 57 HOH HOH . M 4 HOH A 28 928 101 HOH HOH . M 4 HOH A 29 929 14 HOH HOH . M 4 HOH A 30 930 35 HOH HOH . M 4 HOH A 31 931 74 HOH HOH . M 4 HOH A 32 932 31 HOH HOH . M 4 HOH A 33 933 6 HOH HOH . M 4 HOH A 34 934 49 HOH HOH . M 4 HOH A 35 935 1 HOH HOH . M 4 HOH A 36 936 92 HOH HOH . M 4 HOH A 37 937 26 HOH HOH . M 4 HOH A 38 938 39 HOH HOH . M 4 HOH A 39 939 66 HOH HOH . M 4 HOH A 40 940 32 HOH HOH . M 4 HOH A 41 941 80 HOH HOH . M 4 HOH A 42 942 63 HOH HOH . M 4 HOH A 43 943 77 HOH HOH . M 4 HOH A 44 944 54 HOH HOH . M 4 HOH A 45 945 19 HOH HOH . M 4 HOH A 46 946 38 HOH HOH . M 4 HOH A 47 947 45 HOH HOH . M 4 HOH A 48 948 29 HOH HOH . M 4 HOH A 49 949 55 HOH HOH . M 4 HOH A 50 950 27 HOH HOH . M 4 HOH A 51 951 95 HOH HOH . M 4 HOH A 52 952 28 HOH HOH . M 4 HOH A 53 953 103 HOH HOH . M 4 HOH A 54 954 108 HOH HOH . M 4 HOH A 55 955 18 HOH HOH . M 4 HOH A 56 956 25 HOH HOH . M 4 HOH A 57 957 69 HOH HOH . M 4 HOH A 58 958 56 HOH HOH . M 4 HOH A 59 959 44 HOH HOH . M 4 HOH A 60 960 109 HOH HOH . N 4 HOH B 1 601 82 HOH HOH . N 4 HOH B 2 602 41 HOH HOH . N 4 HOH B 3 603 60 HOH HOH . N 4 HOH B 4 604 118 HOH HOH . N 4 HOH B 5 605 62 HOH HOH . N 4 HOH B 6 606 91 HOH HOH . N 4 HOH B 7 607 90 HOH HOH . N 4 HOH B 8 608 7 HOH HOH . N 4 HOH B 9 609 20 HOH HOH . N 4 HOH B 10 610 98 HOH HOH . N 4 HOH B 11 611 71 HOH HOH . N 4 HOH B 12 612 104 HOH HOH . N 4 HOH B 13 613 2 HOH HOH . N 4 HOH B 14 614 47 HOH HOH . N 4 HOH B 15 615 3 HOH HOH . N 4 HOH B 16 616 5 HOH HOH . N 4 HOH B 17 617 89 HOH HOH . N 4 HOH B 18 618 76 HOH HOH . N 4 HOH B 19 619 87 HOH HOH . N 4 HOH B 20 620 24 HOH HOH . N 4 HOH B 21 621 11 HOH HOH . N 4 HOH B 22 622 79 HOH HOH . N 4 HOH B 23 623 12 HOH HOH . N 4 HOH B 24 624 78 HOH HOH . N 4 HOH B 25 625 112 HOH HOH . N 4 HOH B 26 626 13 HOH HOH . N 4 HOH B 27 627 61 HOH HOH . N 4 HOH B 28 628 105 HOH HOH . N 4 HOH B 29 629 10 HOH HOH . N 4 HOH B 30 630 4 HOH HOH . N 4 HOH B 31 631 99 HOH HOH . N 4 HOH B 32 632 100 HOH HOH . N 4 HOH B 33 633 16 HOH HOH . N 4 HOH B 34 634 46 HOH HOH . N 4 HOH B 35 635 65 HOH HOH . N 4 HOH B 36 636 33 HOH HOH . N 4 HOH B 37 637 106 HOH HOH . N 4 HOH B 38 638 64 HOH HOH . N 4 HOH B 39 639 58 HOH HOH . N 4 HOH B 40 640 40 HOH HOH . N 4 HOH B 41 641 72 HOH HOH . N 4 HOH B 42 642 43 HOH HOH . N 4 HOH B 43 643 94 HOH HOH . N 4 HOH B 44 644 9 HOH HOH . N 4 HOH B 45 645 59 HOH HOH . N 4 HOH B 46 646 34 HOH HOH . N 4 HOH B 47 647 17 HOH HOH . N 4 HOH B 48 648 97 HOH HOH . N 4 HOH B 49 649 21 HOH HOH . N 4 HOH B 50 650 70 HOH HOH . N 4 HOH B 51 651 96 HOH HOH . N 4 HOH B 52 652 111 HOH HOH . N 4 HOH B 53 653 51 HOH HOH . N 4 HOH B 54 654 8 HOH HOH . N 4 HOH B 55 655 37 HOH HOH . N 4 HOH B 56 656 22 HOH HOH . N 4 HOH B 57 657 30 HOH HOH . N 4 HOH B 58 658 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . I 2 -34.205 14.605 -35.087 1 106.16 ? P1 POP 501 B 1 HETATM 2 O O1 POP . . . I 2 -34.073 14.512 -36.623 1 104.11 ? O1 POP 501 B 1 HETATM 3 O O2 POP . . . I 2 -35.605 14.091 -34.682 1 105.8 ? O2 POP 501 B 1 HETATM 4 O O3 POP . . . I 2 -33.119 13.699 -34.474 1 105.05 ? O3 POP 501 B 1 HETATM 5 O O POP . . . I 2 -33.991 16.064 -34.594 1 101.38 ? O POP 501 B 1 HETATM 6 P P2 POP . . . I 2 -35.019 16.919 -33.81 1 95.26 ? P2 POP 501 B 1 HETATM 7 O O4 POP . . . I 2 -35.154 18.294 -34.482 1 94.95 ? O4 POP 501 B 1 HETATM 8 O O5 POP . . . I 2 -36.386 16.21 -33.771 1 96.23 ? O5 POP 501 B 1 HETATM 9 O O6 POP . . . I 2 -34.54 17.173 -32.372 1 96 ? O6 POP 501 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #