data_5CVI # _model_server_result.job_id aKDDkQyoDZjICxJgtQOinQ _model_server_result.datetime_utc '2025-03-05 01:45:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cvi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5CVI # _exptl.entry_id 5CVI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CVI _cell.length_a 60.432 _cell.length_b 60.432 _cell.length_c 298.78 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CVI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,C,D,E,F,G,L 2 1 B,H,I,J,K,M 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 x+1/2,-y+1/2,-z+3/4 1 0 0 0 -1 0 0 0 -1 30.216 30.216 224.085 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 30 A LYS 30 1_555 A N MSE 31 A MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 31 A MSE 31 1_555 A N SER 32 A SER 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C GLU 40 A GLU 40 1_555 A N MSE 41 A MSE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 41 A MSE 41 1_555 A N VAL 42 A VAL 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C LEU 83 A LEU 83 1_555 A N MSE 84 A MSE 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 84 A MSE 84 1_555 A N ASN 85 A ASN 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C GLU 149 A GLU 149 1_555 A N MSE 150 A MSE 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 150 A MSE 150 1_555 A N GLY 151 A GLY 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C TYR 167 A TYR 167 1_555 A N MSE 168 A MSE 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MSE 168 A MSE 168 1_555 A N GLU 169 A GLU 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C MSE 1 B MSE 1 1_555 B N THR 2 B THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C LYS 30 B LYS 30 1_555 B N MSE 31 B MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 B C MSE 31 B MSE 31 1_555 B N SER 32 B SER 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 B C GLU 40 B GLU 40 1_555 B N MSE 41 B MSE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 B C MSE 41 B MSE 41 1_555 B N VAL 42 B VAL 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 B C LEU 83 B LEU 83 1_555 B N MSE 84 B MSE 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 B C MSE 84 B MSE 84 1_555 B N ASN 85 B ASN 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 B C GLU 149 B GLU 149 1_555 B N MSE 150 B MSE 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 B C MSE 150 B MSE 150 1_555 B N GLY 151 B GLY 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 B C TYR 167 B TYR 167 1_555 B N MSE 168 B MSE 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 B C MSE 168 B MSE 168 1_555 B N GLU 169 B GLU 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OD1 ASP 7 A ASP 7 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc2 A NE2 HIS 76 A HIS 76 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc3 A OE2 GLU 80 A GLU 80 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc4 A ND1 HIS 95 A HIS 95 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc5 A OE2 GLU 99 A GLU 99 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc6 A OE2 GLU 102 A GLU 102 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc7 A NE2 HIS 103 A HIS 103 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc8 A OD1 ASP 107 A ASP 107 1_555 F ZN ZN . A ZN 304 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc9 A OE2 GLU 111 A GLU 111 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc10 A SG CYS 123 A CYS 123 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc11 A ND1 HIS 125 A HIS 125 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc12 A ND1 HIS 132 A HIS 132 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc13 A OD2 ASP 160 A ASP 160 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc14 A NE2 HIS 172 A HIS 172 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc15 A OE1 GLU 198 A GLU 198 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc16 A OE2 GLU 198 A GLU 198 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc17 D ZN ZN . A ZN 302 1_555 L O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc18 E ZN ZN . A ZN 303 1_555 L O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc19 G ZN ZN . A ZN 305 6_455 B OD1 ASP 49 B ASP 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc20 B OD1 ASP 7 B ASP 7 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc21 B NE2 HIS 76 B HIS 76 1_555 J ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc22 B OE2 GLU 80 B GLU 80 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc23 B ND1 HIS 95 B HIS 95 1_555 J ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc24 B OE2 GLU 99 B GLU 99 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc25 B OE2 GLU 102 B GLU 102 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc26 B NE2 HIS 103 B HIS 103 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc27 B SG CYS 123 B CYS 123 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc28 B ND1 HIS 125 B HIS 125 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc29 B OD2 ASP 160 B ASP 160 1_555 J ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc30 I ZN ZN . B ZN 302 1_555 M O HOH . B HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc31 J ZN ZN . B ZN 303 1_555 M O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CVI _atom_sites.fract_transf_matrix[1][1] 0.016548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 1 ZN ZN . D 2 ZN A 1 302 3 ZN ZN . E 2 ZN A 1 303 5 ZN ZN . F 2 ZN A 1 304 1 ZN ZN . G 2 ZN A 1 305 2 ZN ZN . H 2 ZN B 1 301 2 ZN ZN . I 2 ZN B 1 302 4 ZN ZN . J 2 ZN B 1 303 6 ZN ZN . K 3 EDO B 1 304 1 EDO EGL . L 4 HOH A 1 401 28 HOH HOH . L 4 HOH A 2 402 31 HOH HOH . L 4 HOH A 3 403 27 HOH HOH . L 4 HOH A 4 404 24 HOH HOH . L 4 HOH A 5 405 29 HOH HOH . L 4 HOH A 6 406 25 HOH HOH . L 4 HOH A 7 407 40 HOH HOH . L 4 HOH A 8 408 26 HOH HOH . L 4 HOH A 9 409 4 HOH HOH . L 4 HOH A 10 410 12 HOH HOH . L 4 HOH A 11 411 3 HOH HOH . L 4 HOH A 12 412 14 HOH HOH . L 4 HOH A 13 413 23 HOH HOH . L 4 HOH A 14 414 13 HOH HOH . M 4 HOH B 1 401 41 HOH HOH . M 4 HOH B 2 402 9 HOH HOH . M 4 HOH B 3 403 42 HOH HOH . M 4 HOH B 4 404 39 HOH HOH . M 4 HOH B 5 405 44 HOH HOH . M 4 HOH B 6 406 15 HOH HOH . M 4 HOH B 7 407 5 HOH HOH . M 4 HOH B 8 408 43 HOH HOH . M 4 HOH B 9 409 36 HOH HOH . M 4 HOH B 10 410 17 HOH HOH . M 4 HOH B 11 411 2 HOH HOH . M 4 HOH B 12 412 38 HOH HOH . M 4 HOH B 13 413 1 HOH HOH . M 4 HOH B 14 414 7 HOH HOH . M 4 HOH B 15 415 21 HOH HOH . M 4 HOH B 16 416 11 HOH HOH . M 4 HOH B 17 417 16 HOH HOH . M 4 HOH B 18 418 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 48.875 _atom_site.Cartn_y -4.299 _atom_site.Cartn_z 120.105 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #