data_5CVL
#
_model_server_result.job_id            nPuIrJ-fpW7t-Aat64b1OA 
_model_server_result.datetime_utc      '2024-11-25 10:47:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cvl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":607}' 
#
_entry.id    5CVL 
#
_exptl.entry_id    5CVL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              196.967 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GOLD ION' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CVL 
_cell.length_a            139.52 
_cell.length_b            139.52 
_cell.length_c            235.109 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CVL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 100 A CYS 85 1_555 E AU AU . A AU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc2 A SG CYS 124 A CYS 109 1_555 G AU AU . A AU 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc3 A SG CYS 259 A CYS 244 1_555 H AU AU . A AU 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc4 A OG1 THR 262 A THR 247 1_555 H AU AU . A AU 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc5 A SG CYS 293 A CYS 278 1_555 D AU AU . A AU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc6 A SG CYS 293 A CYS 278 1_555 J AU AU . A AU 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc7 A SG CYS 381 A CYS 366 1_555 F AU AU . A AU 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc8 A SG CYS 381 A CYS 366 1_555 I AU AU . A AU 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? 
#
_chem_comp.formula           'Au 1' 
_chem_comp.formula_weight    196.967 
_chem_comp.id                AU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GOLD ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5CVL 
_atom_sites.fract_transf_matrix[1][1]    0.007167 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007167 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004253 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 601 1 PO4 PO4 . 
C 2 PO4 A 1 602 2 PO4 PO4 . 
D 3 AU A 1 603 1 AU AU . 
E 3 AU A 1 604 2 AU AU . 
F 3 AU A 1 605 3 AU AU . 
G 3 AU A 1 606 4 AU AU . 
H 3 AU A 1 607 5 AU AU . 
I 3 AU A 1 608 6 AU AU . 
J 3 AU A 1 609 8 AU AU . 
K 4 HOH A 1 701 113 HOH HOH . 
K 4 HOH A 2 702 124 HOH HOH . 
K 4 HOH A 3 703 3 HOH HOH . 
K 4 HOH A 4 704 117 HOH HOH . 
K 4 HOH A 5 705 125 HOH HOH . 
K 4 HOH A 6 706 218 HOH HOH . 
K 4 HOH A 7 707 121 HOH HOH . 
K 4 HOH A 8 708 186 HOH HOH . 
K 4 HOH A 9 709 13 HOH HOH . 
K 4 HOH A 10 710 61 HOH HOH . 
K 4 HOH A 11 711 114 HOH HOH . 
K 4 HOH A 12 712 208 HOH HOH . 
K 4 HOH A 13 713 116 HOH HOH . 
K 4 HOH A 14 714 209 HOH HOH . 
K 4 HOH A 15 715 56 HOH HOH . 
K 4 HOH A 16 716 234 HOH HOH . 
K 4 HOH A 17 717 196 HOH HOH . 
K 4 HOH A 18 718 151 HOH HOH . 
K 4 HOH A 19 719 97 HOH HOH . 
K 4 HOH A 20 720 241 HOH HOH . 
K 4 HOH A 21 721 112 HOH HOH . 
K 4 HOH A 22 722 63 HOH HOH . 
K 4 HOH A 23 723 1 HOH HOH . 
K 4 HOH A 24 724 58 HOH HOH . 
K 4 HOH A 25 725 230 HOH HOH . 
K 4 HOH A 26 726 47 HOH HOH . 
K 4 HOH A 27 727 200 HOH HOH . 
K 4 HOH A 28 728 164 HOH HOH . 
K 4 HOH A 29 729 73 HOH HOH . 
K 4 HOH A 30 730 71 HOH HOH . 
K 4 HOH A 31 731 250 HOH HOH . 
K 4 HOH A 32 732 193 HOH HOH . 
K 4 HOH A 33 733 74 HOH HOH . 
K 4 HOH A 34 734 203 HOH HOH . 
K 4 HOH A 35 735 36 HOH HOH . 
K 4 HOH A 36 736 212 HOH HOH . 
K 4 HOH A 37 737 132 HOH HOH . 
K 4 HOH A 38 738 35 HOH HOH . 
K 4 HOH A 39 739 185 HOH HOH . 
K 4 HOH A 40 740 239 HOH HOH . 
K 4 HOH A 41 741 68 HOH HOH . 
K 4 HOH A 42 742 242 HOH HOH . 
K 4 HOH A 43 743 6 HOH HOH . 
K 4 HOH A 44 744 57 HOH HOH . 
K 4 HOH A 45 745 31 HOH HOH . 
K 4 HOH A 46 746 83 HOH HOH . 
K 4 HOH A 47 747 17 HOH HOH . 
K 4 HOH A 48 748 165 HOH HOH . 
K 4 HOH A 49 749 167 HOH HOH . 
K 4 HOH A 50 750 215 HOH HOH . 
K 4 HOH A 51 751 90 HOH HOH . 
K 4 HOH A 52 752 51 HOH HOH . 
K 4 HOH A 53 753 150 HOH HOH . 
K 4 HOH A 54 754 229 HOH HOH . 
K 4 HOH A 55 755 118 HOH HOH . 
K 4 HOH A 56 756 84 HOH HOH . 
K 4 HOH A 57 757 85 HOH HOH . 
K 4 HOH A 58 758 191 HOH HOH . 
K 4 HOH A 59 759 48 HOH HOH . 
K 4 HOH A 60 760 79 HOH HOH . 
K 4 HOH A 61 761 115 HOH HOH . 
K 4 HOH A 62 762 194 HOH HOH . 
K 4 HOH A 63 763 143 HOH HOH . 
K 4 HOH A 64 764 240 HOH HOH . 
K 4 HOH A 65 765 195 HOH HOH . 
K 4 HOH A 66 766 96 HOH HOH . 
K 4 HOH A 67 767 75 HOH HOH . 
K 4 HOH A 68 768 107 HOH HOH . 
K 4 HOH A 69 769 220 HOH HOH . 
K 4 HOH A 70 770 4 HOH HOH . 
K 4 HOH A 71 771 41 HOH HOH . 
K 4 HOH A 72 772 105 HOH HOH . 
K 4 HOH A 73 773 88 HOH HOH . 
K 4 HOH A 74 774 32 HOH HOH . 
K 4 HOH A 75 775 253 HOH HOH . 
K 4 HOH A 76 776 168 HOH HOH . 
K 4 HOH A 77 777 111 HOH HOH . 
K 4 HOH A 78 778 99 HOH HOH . 
K 4 HOH A 79 779 50 HOH HOH . 
K 4 HOH A 80 780 245 HOH HOH . 
K 4 HOH A 81 781 23 HOH HOH . 
K 4 HOH A 82 782 52 HOH HOH . 
K 4 HOH A 83 783 29 HOH HOH . 
K 4 HOH A 84 784 190 HOH HOH . 
K 4 HOH A 85 785 204 HOH HOH . 
K 4 HOH A 86 786 201 HOH HOH . 
K 4 HOH A 87 787 82 HOH HOH . 
K 4 HOH A 88 788 149 HOH HOH . 
K 4 HOH A 89 789 65 HOH HOH . 
K 4 HOH A 90 790 108 HOH HOH . 
K 4 HOH A 91 791 213 HOH HOH . 
K 4 HOH A 92 792 255 HOH HOH . 
K 4 HOH A 93 793 243 HOH HOH . 
K 4 HOH A 94 794 178 HOH HOH . 
K 4 HOH A 95 795 246 HOH HOH . 
K 4 HOH A 96 796 166 HOH HOH . 
K 4 HOH A 97 797 72 HOH HOH . 
K 4 HOH A 98 798 86 HOH HOH . 
K 4 HOH A 99 799 236 HOH HOH . 
K 4 HOH A 100 800 67 HOH HOH . 
K 4 HOH A 101 801 175 HOH HOH . 
K 4 HOH A 102 802 12 HOH HOH . 
K 4 HOH A 103 803 54 HOH HOH . 
K 4 HOH A 104 804 180 HOH HOH . 
K 4 HOH A 105 805 192 HOH HOH . 
K 4 HOH A 106 806 205 HOH HOH . 
K 4 HOH A 107 807 21 HOH HOH . 
K 4 HOH A 108 808 223 HOH HOH . 
K 4 HOH A 109 809 5 HOH HOH . 
K 4 HOH A 110 810 64 HOH HOH . 
K 4 HOH A 111 811 176 HOH HOH . 
K 4 HOH A 112 812 100 HOH HOH . 
K 4 HOH A 113 813 42 HOH HOH . 
K 4 HOH A 114 814 33 HOH HOH . 
K 4 HOH A 115 815 129 HOH HOH . 
K 4 HOH A 116 816 189 HOH HOH . 
K 4 HOH A 117 817 30 HOH HOH . 
K 4 HOH A 118 818 104 HOH HOH . 
K 4 HOH A 119 819 95 HOH HOH . 
K 4 HOH A 120 820 172 HOH HOH . 
K 4 HOH A 121 821 183 HOH HOH . 
K 4 HOH A 122 822 210 HOH HOH . 
K 4 HOH A 123 823 93 HOH HOH . 
K 4 HOH A 124 824 103 HOH HOH . 
K 4 HOH A 125 825 122 HOH HOH . 
K 4 HOH A 126 826 174 HOH HOH . 
K 4 HOH A 127 827 179 HOH HOH . 
K 4 HOH A 128 828 235 HOH HOH . 
K 4 HOH A 129 829 248 HOH HOH . 
K 4 HOH A 130 830 184 HOH HOH . 
K 4 HOH A 131 831 231 HOH HOH . 
K 4 HOH A 132 832 238 HOH HOH . 
K 4 HOH A 133 833 188 HOH HOH . 
K 4 HOH A 134 834 177 HOH HOH . 
K 4 HOH A 135 835 182 HOH HOH . 
K 4 HOH A 136 836 254 HOH HOH . 
K 4 HOH A 137 837 24 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           AU 
_atom_site.label_atom_id         AU 
_atom_site.label_comp_id         AU 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               37.285 
_atom_site.Cartn_y               32.615 
_atom_site.Cartn_z               120.257 
_atom_site.occupancy             0.37 
_atom_site.B_iso_or_equiv        160.41 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          AU 
_atom_site.auth_comp_id          AU 
_atom_site.auth_seq_id           607 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#