data_5CVP
#
_model_server_result.job_id            0hPYcFX-9hGV7Vk1BeYO5w 
_model_server_result.datetime_utc      '2024-10-10 10:27:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cvp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":209}' 
#
_entry.id    5CVP 
#
_exptl.entry_id    5CVP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5CVP 
_cell.length_a            58.871 
_cell.length_b            58.871 
_cell.length_c            264.106 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CVP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 14 A LEU 14 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc2 A NE2 HIS 29 A HIS 29 1_555 J CD CD . A CD 209 8_445 ? B ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc3 A OE1 GLU 37 A GLU 37 1_555 B CD CD . A CD 201 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc4 A NE2 HIS 43 A HIS 43 1_555 C CD CD . A CD 202 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc5 A OE1 GLN 51 A GLN 51 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc6 A OE1 GLU 86 A GLU 86 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc7 A OE1 GLU 91 A GLU 91 1_555 J CD CD . A CD 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc8 A SG CYS 99 A CYS 99 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc9 A OE1 GLU 128 A GLU 128 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc10 A OE2 GLU 128 A GLU 128 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc11 A OE1 GLU 130 A GLU 130 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc12 A OE2 GLU 130 A GLU 130 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
metalc ? metalc13 A OE1 GLU 132 A GLU 132 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc14 A NE2 HIS 141 A HIS 141 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc15 A OE1 GLU 142 A GLU 142 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc16 A OE2 GLU 142 A GLU 142 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc17 A NE2 HIS 145 A HIS 145 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc18 A NE2 HIS 145 A HIS 145 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc19 B CD CD . A CD 201 1_555 K O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc20 C CD CD . A CD 202 1_555 K O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc21 C CD CD . A CD 202 1_555 K O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc22 E CD CD . A CD 204 1_555 K O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc23 G NA NA . A NA 206 1_555 K O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc24 G NA NA . A NA 206 1_555 K O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? 
metalc ? metalc25 H NA NA . A NA 207 1_555 K O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc26 H NA NA . A NA 207 1_555 K O HOH . A HOH 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc27 H NA NA . A NA 207 1_555 K O HOH . A HOH 399 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc28 H NA NA . A NA 207 1_555 K O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc29 H NA NA . A NA 207 1_555 K O HOH . A HOH 464 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5CVP 
_atom_sites.fract_transf_matrix[1][1]    0.016986 
_atom_sites.fract_transf_matrix[1][2]    0.009807 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019614 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003786 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 201 1 CD CD . 
C 2 CD A 1 202 2 CD CD . 
D 2 CD A 1 203 3 CD CD . 
E 2 CD A 1 204 4 CD CD . 
F 3 ACT A 1 205 1 ACT ACT . 
G 4 NA A 1 206 1 NA NA . 
H 4 NA A 1 207 2 NA NA . 
I 5 56F A 1 208 1 56F 571 . 
J 2 CD A 1 209 1 CD CD . 
K 6 HOH A 1 301 14 HOH HOH . 
K 6 HOH A 2 302 112 HOH HOH . 
K 6 HOH A 3 303 18 HOH HOH . 
K 6 HOH A 4 304 26 HOH HOH . 
K 6 HOH A 5 305 113 HOH HOH . 
K 6 HOH A 6 306 10 HOH HOH . 
K 6 HOH A 7 307 27 HOH HOH . 
K 6 HOH A 8 308 93 HOH HOH . 
K 6 HOH A 9 309 46 HOH HOH . 
K 6 HOH A 10 310 108 HOH HOH . 
K 6 HOH A 11 311 5 HOH HOH . 
K 6 HOH A 12 312 75 HOH HOH . 
K 6 HOH A 13 313 81 HOH HOH . 
K 6 HOH A 14 314 44 HOH HOH . 
K 6 HOH A 15 315 102 HOH HOH . 
K 6 HOH A 16 316 91 HOH HOH . 
K 6 HOH A 17 317 191 HOH HOH . 
K 6 HOH A 18 318 1 HOH HOH . 
K 6 HOH A 19 319 136 HOH HOH . 
K 6 HOH A 20 320 11 HOH HOH . 
K 6 HOH A 21 321 2 HOH HOH . 
K 6 HOH A 22 322 56 HOH HOH . 
K 6 HOH A 23 323 187 HOH HOH . 
K 6 HOH A 24 324 190 HOH HOH . 
K 6 HOH A 25 325 123 HOH HOH . 
K 6 HOH A 26 326 61 HOH HOH . 
K 6 HOH A 27 327 22 HOH HOH . 
K 6 HOH A 28 328 122 HOH HOH . 
K 6 HOH A 29 329 24 HOH HOH . 
K 6 HOH A 30 330 4 HOH HOH . 
K 6 HOH A 31 331 86 HOH HOH . 
K 6 HOH A 32 332 143 HOH HOH . 
K 6 HOH A 33 333 19 HOH HOH . 
K 6 HOH A 34 334 23 HOH HOH . 
K 6 HOH A 35 335 92 HOH HOH . 
K 6 HOH A 36 336 39 HOH HOH . 
K 6 HOH A 37 337 32 HOH HOH . 
K 6 HOH A 38 338 3 HOH HOH . 
K 6 HOH A 39 339 3 HOH HOH . 
K 6 HOH A 40 340 2 HOH HOH . 
K 6 HOH A 41 341 96 HOH HOH . 
K 6 HOH A 42 342 124 HOH HOH . 
K 6 HOH A 43 343 1 HOH HOH . 
K 6 HOH A 44 344 66 HOH HOH . 
K 6 HOH A 45 345 69 HOH HOH . 
K 6 HOH A 46 346 119 HOH HOH . 
K 6 HOH A 47 347 28 HOH HOH . 
K 6 HOH A 48 348 6 HOH HOH . 
K 6 HOH A 49 349 159 HOH HOH . 
K 6 HOH A 50 350 34 HOH HOH . 
K 6 HOH A 51 351 77 HOH HOH . 
K 6 HOH A 52 352 94 HOH HOH . 
K 6 HOH A 53 353 16 HOH HOH . 
K 6 HOH A 54 354 149 HOH HOH . 
K 6 HOH A 55 355 88 HOH HOH . 
K 6 HOH A 56 356 31 HOH HOH . 
K 6 HOH A 57 357 13 HOH HOH . 
K 6 HOH A 58 358 20 HOH HOH . 
K 6 HOH A 59 359 57 HOH HOH . 
K 6 HOH A 60 360 89 HOH HOH . 
K 6 HOH A 61 361 13 HOH HOH . 
K 6 HOH A 62 362 36 HOH HOH . 
K 6 HOH A 63 363 148 HOH HOH . 
K 6 HOH A 64 364 7 HOH HOH . 
K 6 HOH A 65 365 10 HOH HOH . 
K 6 HOH A 66 366 192 HOH HOH . 
K 6 HOH A 67 367 43 HOH HOH . 
K 6 HOH A 68 368 115 HOH HOH . 
K 6 HOH A 69 369 59 HOH HOH . 
K 6 HOH A 70 370 40 HOH HOH . 
K 6 HOH A 71 371 5 HOH HOH . 
K 6 HOH A 72 372 50 HOH HOH . 
K 6 HOH A 73 373 9 HOH HOH . 
K 6 HOH A 74 374 58 HOH HOH . 
K 6 HOH A 75 375 1 HOH HOH . 
K 6 HOH A 76 376 76 HOH HOH . 
K 6 HOH A 77 377 33 HOH HOH . 
K 6 HOH A 78 378 25 HOH HOH . 
K 6 HOH A 79 379 37 HOH HOH . 
K 6 HOH A 80 380 7 HOH HOH . 
K 6 HOH A 81 381 80 HOH HOH . 
K 6 HOH A 82 382 21 HOH HOH . 
K 6 HOH A 83 383 100 HOH HOH . 
K 6 HOH A 84 384 41 HOH HOH . 
K 6 HOH A 85 385 73 HOH HOH . 
K 6 HOH A 86 386 126 HOH HOH . 
K 6 HOH A 87 387 106 HOH HOH . 
K 6 HOH A 88 388 5 HOH HOH . 
K 6 HOH A 89 389 49 HOH HOH . 
K 6 HOH A 90 390 8 HOH HOH . 
K 6 HOH A 91 391 186 HOH HOH . 
K 6 HOH A 92 392 64 HOH HOH . 
K 6 HOH A 93 393 84 HOH HOH . 
K 6 HOH A 94 394 29 HOH HOH . 
K 6 HOH A 95 395 4 HOH HOH . 
K 6 HOH A 96 396 63 HOH HOH . 
K 6 HOH A 97 397 67 HOH HOH . 
K 6 HOH A 98 398 65 HOH HOH . 
K 6 HOH A 99 399 3 HOH HOH . 
K 6 HOH A 100 400 45 HOH HOH . 
K 6 HOH A 101 401 6 HOH HOH . 
K 6 HOH A 102 402 138 HOH HOH . 
K 6 HOH A 103 403 3 HOH HOH . 
K 6 HOH A 104 404 6 HOH HOH . 
K 6 HOH A 105 405 17 HOH HOH . 
K 6 HOH A 106 406 125 HOH HOH . 
K 6 HOH A 107 407 127 HOH HOH . 
K 6 HOH A 108 408 188 HOH HOH . 
K 6 HOH A 109 409 8 HOH HOH . 
K 6 HOH A 110 410 103 HOH HOH . 
K 6 HOH A 111 411 147 HOH HOH . 
K 6 HOH A 112 412 55 HOH HOH . 
K 6 HOH A 113 413 15 HOH HOH . 
K 6 HOH A 114 414 101 HOH HOH . 
K 6 HOH A 115 415 7 HOH HOH . 
K 6 HOH A 116 416 85 HOH HOH . 
K 6 HOH A 117 417 52 HOH HOH . 
K 6 HOH A 118 418 35 HOH HOH . 
K 6 HOH A 119 419 15 HOH HOH . 
K 6 HOH A 120 420 2 HOH HOH . 
K 6 HOH A 121 421 107 HOH HOH . 
K 6 HOH A 122 422 54 HOH HOH . 
K 6 HOH A 123 423 38 HOH HOH . 
K 6 HOH A 124 424 133 HOH HOH . 
K 6 HOH A 125 425 1 HOH HOH . 
K 6 HOH A 126 426 137 HOH HOH . 
K 6 HOH A 127 427 97 HOH HOH . 
K 6 HOH A 128 428 30 HOH HOH . 
K 6 HOH A 129 429 170 HOH HOH . 
K 6 HOH A 130 430 95 HOH HOH . 
K 6 HOH A 131 431 2 HOH HOH . 
K 6 HOH A 132 432 117 HOH HOH . 
K 6 HOH A 133 433 70 HOH HOH . 
K 6 HOH A 134 434 78 HOH HOH . 
K 6 HOH A 135 435 114 HOH HOH . 
K 6 HOH A 136 436 9 HOH HOH . 
K 6 HOH A 137 437 83 HOH HOH . 
K 6 HOH A 138 438 72 HOH HOH . 
K 6 HOH A 139 439 82 HOH HOH . 
K 6 HOH A 140 440 12 HOH HOH . 
K 6 HOH A 141 441 134 HOH HOH . 
K 6 HOH A 142 442 1 HOH HOH . 
K 6 HOH A 143 443 4 HOH HOH . 
K 6 HOH A 144 444 166 HOH HOH . 
K 6 HOH A 145 445 1 HOH HOH . 
K 6 HOH A 146 446 51 HOH HOH . 
K 6 HOH A 147 447 3 HOH HOH . 
K 6 HOH A 148 448 74 HOH HOH . 
K 6 HOH A 149 449 178 HOH HOH . 
K 6 HOH A 150 450 7 HOH HOH . 
K 6 HOH A 151 451 42 HOH HOH . 
K 6 HOH A 152 452 111 HOH HOH . 
K 6 HOH A 153 453 14 HOH HOH . 
K 6 HOH A 154 454 116 HOH HOH . 
K 6 HOH A 155 455 176 HOH HOH . 
K 6 HOH A 156 456 120 HOH HOH . 
K 6 HOH A 157 457 87 HOH HOH . 
K 6 HOH A 158 458 177 HOH HOH . 
K 6 HOH A 159 459 47 HOH HOH . 
K 6 HOH A 160 460 4 HOH HOH . 
K 6 HOH A 161 461 184 HOH HOH . 
K 6 HOH A 162 462 5 HOH HOH . 
K 6 HOH A 163 463 2 HOH HOH . 
K 6 HOH A 164 464 6 HOH HOH . 
K 6 HOH A 165 465 90 HOH HOH . 
K 6 HOH A 166 466 68 HOH HOH . 
K 6 HOH A 167 467 140 HOH HOH . 
K 6 HOH A 168 468 130 HOH HOH . 
K 6 HOH A 169 469 98 HOH HOH . 
K 6 HOH A 170 470 104 HOH HOH . 
K 6 HOH A 171 471 71 HOH HOH . 
K 6 HOH A 172 472 79 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               22.232 
_atom_site.Cartn_y               -20.612 
_atom_site.Cartn_z               -13.54 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        40.05 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           209 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#